==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 15-AUG-02 1MG8 . COMPND 2 MOLECULE: PARKIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.TASHIRO,S.OKUBO,S.SHIMOTAKAHARA,H.HATANAKA,H.YASUDA, . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5267.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 231 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-158.6 11.2 -15.1 23.2 2 2 A G - 0 0 25 18,-0.1 2,-0.2 19,-0.0 18,-0.2 -0.179 360.0-112.1 121.5 143.2 9.0 -12.1 23.6 3 3 A M - 0 0 80 16,-0.4 16,-1.3 -2,-0.1 63,-0.3 -0.631 39.9 -89.4-105.1 164.1 6.1 -11.2 25.9 4 4 A I E -A 18 0A 55 -2,-0.2 14,-0.2 14,-0.2 2,-0.2 -0.473 34.2-149.2 -73.2 144.3 2.4 -10.7 25.0 5 5 A V E -A 17 0A 5 12,-2.3 12,-1.5 61,-0.2 2,-0.9 -0.657 23.9-111.6-103.4 163.8 1.1 -7.3 24.0 6 6 A F E -Ab 16 68A 68 61,-1.8 63,-2.6 -2,-0.2 2,-0.8 -0.795 31.7-170.7-101.7 103.3 -2.5 -6.2 24.7 7 7 A V E -Ab 15 69A 0 8,-1.2 8,-2.3 -2,-0.9 2,-1.4 -0.768 13.6-150.7 -91.7 112.8 -4.4 -5.9 21.5 8 8 A R E -Ab 14 70A 94 61,-1.4 63,-1.6 -2,-0.8 2,-1.3 -0.639 13.9-148.8 -82.3 97.9 -7.8 -4.3 22.1 9 9 A F - 0 0 2 -2,-1.4 4,-0.5 4,-0.8 2,-0.1 -0.495 58.2 -60.4 -68.9 96.6 -9.7 -5.9 19.3 10 10 A N S S- 0 0 81 -2,-1.3 2,-0.4 61,-0.4 61,-0.2 -0.404 103.9 -32.3 61.6-131.3 -12.2 -3.1 18.5 11 11 A S S S+ 0 0 86 1,-0.1 3,-0.1 -2,-0.1 59,-0.0 -0.971 129.3 8.1-126.3 137.9 -14.3 -2.6 21.7 12 12 A S S S+ 0 0 138 -2,-0.4 2,-0.5 1,-0.1 -1,-0.1 0.480 111.8 90.3 77.6 -1.4 -15.3 -5.1 24.3 13 13 A Y + 0 0 152 -4,-0.5 -4,-0.8 2,-0.0 2,-0.4 -0.934 50.4 170.8-130.8 112.7 -13.0 -7.6 22.6 14 14 A G E -A 8 0A 40 -2,-0.5 -6,-0.2 -6,-0.3 -3,-0.0 -0.968 8.2-172.5-123.4 134.5 -9.3 -8.0 23.6 15 15 A F E -A 7 0A 13 -8,-2.3 -8,-1.2 -2,-0.4 2,-0.4 -0.989 22.2-128.9-129.7 131.5 -6.9 -10.7 22.4 16 16 A P E -A 6 0A 82 0, 0.0 2,-0.3 0, 0.0 -10,-0.2 -0.612 25.8-165.1 -78.4 126.3 -3.4 -11.3 23.7 17 17 A V E -A 5 0A 2 -12,-1.5 -12,-2.3 -2,-0.4 2,-0.7 -0.859 16.6-133.3-111.8 148.1 -0.7 -11.5 20.9 18 18 A E E +A 4 0A 140 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.850 43.1 148.7-102.2 112.1 2.8 -12.8 21.3 19 19 A V - 0 0 6 -16,-1.3 -16,-0.4 -2,-0.7 2,-0.1 -0.956 38.3-127.7-139.0 160.2 5.4 -10.5 19.7 20 20 A D > - 0 0 61 -2,-0.3 3,-1.1 -18,-0.2 38,-0.1 -0.449 42.2 -94.1 -98.0 176.2 9.0 -9.4 20.2 21 21 A S T 3 S+ 0 0 31 1,-0.2 38,-2.2 -2,-0.1 37,-0.3 0.523 124.8 58.5 -69.3 -0.2 10.3 -5.9 20.5 22 22 A D T 3 + 0 0 94 36,-0.2 -1,-0.2 35,-0.2 -3,-0.0 0.656 68.7 122.1-102.9 -19.5 11.0 -6.1 16.8 23 23 A T < - 0 0 12 -3,-1.1 35,-0.3 34,-0.2 -4,-0.0 -0.182 60.8-136.4 -45.3 124.1 7.5 -6.9 15.5 24 24 A S - 0 0 32 33,-0.2 31,-0.1 1,-0.1 30,-0.1 0.465 18.5-110.2 -60.8-142.4 6.8 -4.0 13.1 25 25 A I S > S+ 0 0 3 29,-0.8 4,-1.5 3,-0.1 20,-0.4 0.605 113.1 42.4-130.2 -31.1 3.4 -2.4 13.2 26 26 A L H > S+ 0 0 48 28,-0.7 4,-1.8 2,-0.3 5,-0.1 0.887 115.3 53.3 -81.8 -34.9 1.6 -3.4 10.0 27 27 A Q H > S+ 0 0 98 27,-0.4 4,-2.0 1,-0.3 5,-0.2 0.895 107.6 51.9 -60.0 -33.2 3.1 -6.8 10.7 28 28 A L H > S+ 0 0 8 1,-0.2 4,-2.0 2,-0.2 5,-0.3 0.890 107.3 50.5 -68.9 -38.0 1.4 -6.1 14.0 29 29 A K H X S+ 0 0 7 -4,-1.5 4,-1.0 1,-0.2 -2,-0.2 0.733 106.9 57.6 -72.3 -20.3 -1.8 -5.4 12.1 30 30 A E H X S+ 0 0 85 -4,-1.8 4,-1.6 2,-0.2 -2,-0.2 0.957 109.5 40.2 -76.3 -50.0 -1.3 -8.7 10.3 31 31 A V H X S+ 0 0 46 -4,-2.0 4,-1.7 2,-0.2 3,-0.4 0.961 120.8 44.3 -64.1 -48.0 -1.3 -10.9 13.3 32 32 A V H X S+ 0 0 0 -4,-2.0 4,-1.5 1,-0.3 -1,-0.2 0.884 110.9 56.6 -63.2 -33.0 -4.1 -9.0 15.0 33 33 A A H X>S+ 0 0 1 -4,-1.0 5,-2.0 -5,-0.3 4,-0.9 0.849 101.6 58.2 -67.0 -29.7 -5.7 -9.1 11.5 34 34 A K H ><5S+ 0 0 133 -4,-1.6 3,-0.8 -3,-0.4 -2,-0.2 0.972 110.6 39.2 -64.2 -53.8 -5.5 -12.9 11.7 35 35 A R H 3<5S+ 0 0 148 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.758 112.9 58.2 -69.7 -22.4 -7.5 -13.2 14.9 36 36 A Q H 3<5S- 0 0 52 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.2 0.673 106.5-125.4 -81.9 -15.0 -9.9 -10.5 13.7 37 37 A G T <<5S+ 0 0 73 -4,-0.9 -3,-0.2 -3,-0.8 -2,-0.1 0.805 79.0 98.2 76.0 25.1 -10.8 -12.4 10.6 38 38 A V S > - 0 0 75 0, 0.0 4,-2.4 0, 0.0 3,-0.6 -0.508 33.4-119.2 -78.1 141.4 -6.8 -8.0 6.6 40 40 A A T 34 S+ 0 0 4 1,-0.2 -10,-0.1 -2,-0.2 5,-0.1 0.767 110.8 70.9 -53.1 -22.2 -4.2 -5.8 8.4 41 41 A D T 34 S+ 0 0 131 1,-0.2 -1,-0.2 3,-0.1 -11,-0.0 0.992 107.7 30.9 -60.6 -57.7 -5.2 -3.1 5.9 42 42 A Q T <4 S+ 0 0 59 -3,-0.6 32,-0.6 31,-0.1 -2,-0.2 0.939 115.0 74.5 -64.2 -44.7 -8.6 -2.5 7.6 43 43 A L < + 0 0 0 -4,-2.4 2,-0.3 30,-0.2 30,-0.2 -0.390 64.5 179.9 -67.5 143.1 -7.1 -3.5 10.9 44 44 A R - 0 0 116 -2,-0.1 28,-0.8 -16,-0.1 2,-0.5 -0.862 16.5-153.9-154.3 117.0 -4.9 -0.9 12.6 45 45 A V E +C 71 0A 1 -20,-0.4 2,-0.5 -2,-0.3 7,-0.4 -0.750 14.6 177.9 -91.2 127.0 -3.0 -1.0 15.9 46 46 A I E -C 70 0A 40 24,-1.0 24,-1.6 -2,-0.5 2,-0.5 -0.981 20.6-140.8-130.0 119.9 -2.2 2.3 17.6 47 47 A F E > S-CD 69 50A 30 3,-0.7 3,-2.3 -2,-0.5 22,-0.2 -0.697 78.4 -18.1 -87.7 127.3 -0.5 2.2 21.0 48 48 A A T 3 S- 0 0 52 20,-1.5 -1,-0.2 -2,-0.5 21,-0.1 0.595 124.4 -61.8 59.6 7.8 -1.6 4.8 23.7 49 49 A G T 3 S+ 0 0 56 -3,-0.3 2,-0.7 1,-0.3 -1,-0.3 0.542 102.6 131.5 97.5 6.5 -3.1 6.8 20.8 50 50 A K B < -D 47 0A 103 -3,-2.3 -3,-0.7 11,-0.0 2,-0.7 -0.817 59.2-130.3 -96.6 119.3 0.1 7.4 18.9 51 51 A E - 0 0 166 -2,-0.7 -5,-0.1 -5,-0.2 -1,-0.0 -0.504 29.6-158.5 -66.7 109.3 -0.2 6.6 15.2 52 52 A L - 0 0 5 -2,-0.7 2,-0.2 -7,-0.4 -7,-0.1 -0.711 16.4-116.0 -93.7 146.6 2.8 4.4 14.6 53 53 A P > - 0 0 40 0, 0.0 3,-1.8 0, 0.0 -27,-0.1 -0.489 21.2-123.3 -76.5 142.4 4.3 4.0 11.1 54 54 A N T 3 S+ 0 0 81 1,-0.3 -29,-0.8 -29,-0.2 -28,-0.7 0.580 110.2 58.6 -65.2 -5.2 4.1 0.4 9.7 55 55 A H T 3 S+ 0 0 153 -31,-0.1 -1,-0.3 -30,-0.1 2,-0.1 0.462 86.2 92.0-104.3 0.2 7.9 0.6 9.3 56 56 A L S < S- 0 0 44 -3,-1.8 2,-0.1 1,-0.1 -4,-0.0 -0.506 76.8-113.9 -89.9 163.0 8.8 1.2 12.9 57 57 A T >> - 0 0 51 -2,-0.1 3,-1.5 -33,-0.1 4,-0.9 -0.411 27.0-104.0 -91.5 171.2 9.6 -1.6 15.4 58 58 A V T 34>S+ 0 0 2 -35,-0.3 5,-1.7 1,-0.3 6,-1.3 0.907 123.8 46.3 -62.2 -40.1 7.6 -2.6 18.5 59 59 A Q T 345S+ 0 0 100 -38,-2.2 -1,-0.3 4,-0.2 -37,-0.1 0.225 99.1 79.8 -87.5 18.5 10.2 -0.9 20.8 60 60 A N T <45S+ 0 0 83 -3,-1.5 -2,-0.2 -39,-0.1 -1,-0.1 0.936 99.0 30.3 -88.9 -62.3 10.2 2.2 18.6 61 61 A C T <5S- 0 0 30 -4,-0.9 -2,-0.1 -8,-0.1 -1,-0.1 0.689 126.9 -96.6 -69.5 -14.2 7.0 4.1 19.6 62 62 A D T 5S+ 0 0 109 -4,-0.5 -3,-0.2 -5,-0.2 -4,-0.1 0.687 84.9 134.4 103.8 30.6 7.6 2.5 23.0 63 63 A L < + 0 0 9 -5,-1.7 -4,-0.2 -6,-0.3 -5,-0.1 0.987 29.5 167.4 -72.9 -59.8 5.2 -0.4 22.7 64 64 A E - 0 0 74 -6,-1.3 -44,-0.1 -43,-0.1 -43,-0.0 0.381 59.1 -47.5 60.0 152.4 7.6 -3.1 24.1 65 65 A Q S S+ 0 0 69 -60,-0.1 -60,-0.2 -47,-0.0 -61,-0.2 -0.209 131.9 35.4 -48.7 140.1 6.1 -6.5 24.9 66 66 A Q S S+ 0 0 98 -63,-0.3 2,-0.3 1,-0.2 -61,-0.2 0.743 79.3 147.3 74.6 106.4 3.0 -5.7 27.0 67 67 A S - 0 0 7 -63,-0.1 -61,-1.8 2,-0.0 2,-0.8 -0.838 49.8-120.3-171.8 130.4 1.4 -2.5 25.5 68 68 A I E +b 6 0A 62 -2,-0.3 -20,-1.5 -63,-0.1 2,-0.3 -0.700 41.1 177.1 -84.9 116.0 -2.2 -1.5 25.3 69 69 A V E -bC 7 47A 4 -63,-2.6 -61,-1.4 -2,-0.8 2,-0.5 -0.744 25.5-135.6-113.0 163.7 -2.8 -0.9 21.6 70 70 A H E -bC 8 46A 80 -24,-1.6 -24,-1.0 -2,-0.3 2,-0.2 -0.901 15.3-157.4-124.8 106.8 -6.1 0.0 19.8 71 71 A I E - C 0 45A 8 -63,-1.6 2,-0.4 -2,-0.5 -61,-0.4 -0.578 11.3-168.9 -80.8 141.2 -7.0 -2.0 16.7 72 72 A V - 0 0 70 -28,-0.8 2,-0.5 -2,-0.2 -63,-0.0 -0.976 11.3-177.2-136.4 126.0 -9.3 -0.2 14.3 73 73 A Q - 0 0 36 -2,-0.4 -30,-0.2 -30,-0.2 -31,-0.1 -0.938 42.3-109.5-123.6 111.4 -11.1 -1.7 11.3 74 74 A R - 0 0 192 -32,-0.6 2,-0.5 -2,-0.5 -31,-0.1 -0.107 45.9-151.6 -39.6 96.9 -13.3 0.6 9.1 75 75 A P - 0 0 79 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.671 5.8-134.4 -82.4 124.5 -16.5 -1.0 10.3 76 76 A R - 0 0 178 -2,-0.5 2,-1.3 2,-0.2 0, 0.0 -0.207 63.2 -59.7 -64.5 168.8 -19.5 -0.9 7.9 77 77 A R 0 0 223 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.276 360.0 360.0 -54.1 93.0 -22.7 0.2 9.7 78 78 A R 0 0 292 -2,-1.3 -2,-0.2 -3,-0.2 -1,-0.1 -0.285 360.0 360.0 50.2 360.0 -22.5 -2.8 12.1