==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 09-APR-10 3MI7 . COMPND 2 MOLECULE: REGULATORY PROTEIN E2; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; . AUTHOR A.BOHM,J.BALEJA,K.BOSE,G.MEINKE . 81 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5421.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 58.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 24.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 21.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 284 X N 0 0 137 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 31.6 26.1 -15.2 19.6 2 285 X T - 0 0 82 79,-0.1 79,-0.2 77,-0.0 77,-0.0 -0.895 360.0-132.2-132.7 162.9 24.1 -12.5 21.4 3 286 X T E -A 80 0A 52 77,-2.7 77,-1.8 -2,-0.3 2,-0.2 -0.985 27.7-131.2-111.2 118.8 24.6 -9.3 23.4 4 287 X P E -A 79 0A 14 0, 0.0 50,-1.7 0, 0.0 2,-0.3 -0.550 36.6-175.2 -67.2 133.5 22.5 -9.1 26.6 5 288 X I E -AB 78 53A 15 73,-3.1 73,-1.8 -2,-0.2 2,-0.4 -0.868 25.8-152.7-128.4 160.7 20.7 -5.7 26.8 6 289 X V E -AB 77 52A 0 46,-2.2 46,-2.9 -2,-0.3 2,-0.4 -0.994 11.7-160.3-125.8 138.5 18.5 -3.5 29.0 7 290 X E E -AB 76 51A 42 69,-2.4 69,-2.2 -2,-0.4 2,-0.5 -0.965 2.1-159.2-112.6 139.4 16.1 -1.0 27.7 8 291 X L E -AB 75 50A 1 42,-3.0 42,-2.1 -2,-0.4 2,-0.4 -0.984 12.0-172.6-114.8 120.9 14.8 1.9 29.8 9 292 X K E +AB 74 49A 58 65,-2.1 65,-2.1 -2,-0.5 2,-0.3 -0.934 33.9 74.0-119.1 139.7 11.5 3.5 28.7 10 293 X G E S- B 0 48A 5 38,-2.3 38,-2.1 -2,-0.4 2,-0.2 -0.988 79.7 -6.7 159.5-151.5 9.9 6.6 30.1 11 294 X D > - 0 0 67 61,-0.4 4,-2.3 -2,-0.3 5,-0.2 -0.484 56.7-130.3 -82.0 143.0 10.2 10.4 30.2 12 295 X A H > S+ 0 0 44 1,-0.2 4,-1.5 2,-0.2 -1,-0.1 0.759 104.4 52.0 -67.2 -28.0 13.3 11.9 28.7 13 296 X N H > S+ 0 0 111 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.919 110.5 47.5 -76.0 -43.6 14.2 14.1 31.6 14 297 X T H > S+ 0 0 39 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.930 111.9 51.4 -53.5 -52.8 14.0 11.2 34.1 15 298 X L H X S+ 0 0 2 -4,-2.3 4,-1.6 1,-0.2 -2,-0.2 0.877 108.2 52.7 -54.0 -39.8 16.1 9.1 31.7 16 299 X K H X S+ 0 0 139 -4,-1.5 4,-1.5 2,-0.2 -1,-0.2 0.899 110.0 46.5 -63.4 -43.3 18.7 12.0 31.5 17 300 X C H X S+ 0 0 89 -4,-2.0 4,-2.0 1,-0.2 -2,-0.2 0.870 109.2 56.4 -66.9 -35.1 19.0 12.1 35.3 18 301 X L H X S+ 0 0 6 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.822 103.7 53.9 -63.5 -35.0 19.3 8.3 35.3 19 302 X R H X S+ 0 0 37 -4,-1.6 4,-1.8 2,-0.2 -1,-0.2 0.852 104.6 53.0 -67.9 -41.6 22.3 8.7 33.0 20 303 X Y H < S+ 0 0 172 -4,-1.5 4,-0.3 2,-0.2 3,-0.2 0.960 112.1 49.5 -51.0 -52.8 24.0 11.1 35.4 21 304 X R H >< S+ 0 0 117 -4,-2.0 3,-1.2 1,-0.2 -2,-0.2 0.904 112.2 43.6 -57.4 -50.5 23.4 8.3 38.0 22 305 X F H >< S+ 0 0 1 -4,-2.5 3,-1.9 1,-0.3 -1,-0.2 0.713 93.7 75.3 -83.5 -10.8 24.8 5.4 36.0 23 306 X K T 3< S+ 0 0 137 -4,-1.8 3,-0.5 1,-0.3 -1,-0.3 0.603 91.8 62.6 -62.7 -10.6 27.9 7.1 34.7 24 307 X K T < S+ 0 0 130 -3,-1.2 -1,-0.3 -4,-0.3 -2,-0.2 0.585 104.3 46.9 -84.8 -14.2 29.0 6.5 38.3 25 308 X H X + 0 0 61 -3,-1.9 3,-1.7 -4,-0.1 -1,-0.2 -0.298 69.2 143.1-122.3 46.2 28.7 2.8 37.7 26 309 X S G > + 0 0 74 -3,-0.5 3,-0.8 1,-0.3 -1,-0.1 0.644 64.9 63.0 -69.7 -19.0 30.5 2.6 34.3 27 310 X T G 3 S+ 0 0 117 1,-0.2 -1,-0.3 -3,-0.1 36,-0.1 0.659 95.1 65.9 -75.0 -12.9 32.2 -0.8 35.0 28 311 X L G < S+ 0 0 10 -3,-1.7 2,-0.3 -6,-0.2 35,-0.3 0.303 106.0 34.4 -96.5 4.5 28.7 -2.3 35.2 29 312 X Y < - 0 0 23 -3,-0.8 25,-0.2 1,-0.1 3,-0.1 -0.963 61.9-146.3-147.5 159.4 27.8 -1.8 31.5 30 313 X T S S- 0 0 71 23,-2.9 2,-0.3 1,-0.4 24,-0.2 0.855 80.9 -4.2 -93.9 -41.8 29.7 -1.8 28.2 31 314 X A E -C 53 0A 52 22,-1.0 22,-2.4 2,-0.0 -1,-0.4 -0.988 53.4-161.9-149.4 152.5 27.7 0.9 26.3 32 315 X V E -C 52 0A 40 -2,-0.3 20,-0.2 20,-0.2 2,-0.2 -0.980 22.8-131.3-134.2 143.9 24.7 3.1 26.8 33 316 X S - 0 0 32 18,-2.1 3,-0.1 -2,-0.3 -2,-0.0 -0.508 23.1-100.4 -89.8 160.3 22.9 4.9 24.0 34 317 X S - 0 0 95 -2,-0.2 2,-0.4 1,-0.1 17,-0.4 -0.248 60.9 -80.1 -56.6 170.8 21.8 8.4 23.5 35 318 X T + 0 0 56 15,-0.1 2,-0.2 13,-0.0 15,-0.2 -0.696 66.0 158.5 -83.9 127.0 18.0 8.9 24.2 36 319 X W B -D 49 0A 63 13,-2.3 13,-2.4 -2,-0.4 2,-0.3 -0.675 21.6-161.9-137.6-177.8 15.8 7.8 21.3 37 320 X H - 0 0 80 11,-0.2 2,-0.5 -2,-0.2 11,-0.1 -0.962 36.8 -87.3-161.7 166.4 12.3 6.8 20.5 38 321 X W > - 0 0 156 9,-0.4 3,-2.0 -2,-0.3 4,-0.4 -0.762 57.0-106.2 -81.0 125.8 10.3 5.0 17.8 39 322 X T T 3 S+ 0 0 126 -2,-0.5 -1,-0.1 1,-0.2 -3,-0.0 -0.284 103.6 17.5 -59.3 133.9 9.2 7.7 15.2 40 323 X G T 3 S+ 0 0 74 1,-0.0 3,-0.3 -3,-0.0 -1,-0.2 0.030 112.0 78.7 96.2 -23.8 5.5 8.5 15.6 41 324 X H X + 0 0 135 -3,-2.0 3,-0.7 1,-0.2 -2,-0.2 0.453 65.1 82.3-100.8 -6.2 5.1 7.0 19.1 42 325 X N T 3 + 0 0 52 -4,-0.4 -1,-0.2 1,-0.2 5,-0.2 0.091 49.3 109.2 -99.4 29.9 6.6 9.5 21.5 43 326 X V T 3 0 0 103 -3,-0.3 -1,-0.2 3,-0.1 -2,-0.1 0.614 360.0 360.0 -65.7 -12.4 3.5 11.8 21.8 44 327 X K < 0 0 83 -3,-0.7 3,-0.4 -34,-0.0 -34,-0.0 -0.196 360.0 360.0 -60.7 360.0 3.4 10.2 25.3 45 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 46 329 X K 0 0 70 0, 0.0 -35,-0.2 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 0.4 6.9 8.8 28.3 47 330 X S + 0 0 27 -3,-0.4 -9,-0.4 -5,-0.2 2,-0.2 -0.045 360.0 121.6-122.1 33.8 8.0 6.7 25.4 48 331 X A E -B 10 0A 3 -38,-2.1 -38,-2.3 -11,-0.1 2,-0.3 -0.591 46.3-154.6 -89.8 158.2 11.7 7.8 25.2 49 332 X I E -BD 9 36A 2 -13,-2.4 -13,-2.3 -40,-0.2 2,-0.4 -0.987 22.7-165.9-145.5 142.9 14.3 5.1 25.6 50 333 X V E -B 8 0A 0 -42,-2.1 -42,-3.0 -2,-0.3 2,-0.4 -0.994 16.2-157.3-125.1 134.9 17.9 4.3 26.6 51 334 X T E -B 7 0A 21 -17,-0.4 -18,-2.1 -2,-0.4 2,-0.4 -0.910 6.3-168.3-106.6 137.4 19.5 1.0 25.7 52 335 X L E -BC 6 32A 0 -46,-2.9 -46,-2.2 -2,-0.4 2,-0.3 -0.975 7.1-151.3-122.8 148.0 22.5 -0.4 27.5 53 336 X T E -BC 5 31A 29 -22,-2.4 -23,-2.9 -2,-0.4 -22,-1.0 -0.824 10.3-158.1-113.0 155.8 24.7 -3.3 26.4 54 337 X Y - 0 0 5 -50,-1.7 3,-0.1 -2,-0.3 -25,-0.1 -0.957 27.0-133.6-137.5 152.3 26.6 -5.8 28.6 55 338 X D S S- 0 0 133 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.669 92.4 -9.6 -70.4 -26.1 29.5 -8.2 28.4 56 339 X S S > S- 0 0 48 -52,-0.1 4,-1.4 -53,-0.0 -1,-0.1 -0.949 71.7-101.6-165.4 168.5 27.5 -11.0 30.0 57 340 X E H > S+ 0 0 125 -2,-0.3 4,-2.1 2,-0.2 5,-0.1 0.727 120.1 60.2 -75.3 -24.0 24.3 -11.6 31.8 58 341 X W H > S+ 0 0 175 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.912 103.6 48.6 -66.5 -46.2 26.2 -11.6 35.1 59 342 X Q H > S+ 0 0 26 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.856 110.9 52.8 -60.6 -38.6 27.4 -8.0 34.5 60 343 X R H X S+ 0 0 23 -4,-1.4 4,-2.4 2,-0.2 5,-0.2 0.918 107.4 50.1 -61.0 -46.3 23.7 -7.1 33.7 61 344 X D H X S+ 0 0 88 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.873 109.5 52.5 -59.3 -37.3 22.5 -8.6 37.0 62 345 X Q H X S+ 0 0 60 -4,-1.9 4,-2.3 2,-0.2 5,-0.2 0.863 109.1 50.1 -64.7 -39.5 25.2 -6.6 38.8 63 346 X F H X S+ 0 0 0 -4,-1.7 4,-3.0 -35,-0.3 -2,-0.2 0.961 115.9 40.5 -63.5 -53.2 23.9 -3.4 37.1 64 347 X L H < S+ 0 0 51 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.771 116.8 50.4 -68.3 -29.3 20.3 -4.1 38.0 65 348 X S H < S+ 0 0 81 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.930 123.6 29.3 -66.7 -46.3 21.3 -5.3 41.5 66 349 X Q H < S+ 0 0 116 -4,-2.3 2,-0.7 -5,-0.2 -2,-0.2 0.739 109.2 68.6 -90.9 -31.1 23.5 -2.2 42.2 67 350 X V S < S- 0 0 3 -4,-3.0 2,-0.2 -5,-0.2 -1,-0.1 -0.836 73.8-145.2-105.1 103.9 21.9 0.6 40.2 68 351 X K - 0 0 121 -2,-0.7 -3,-0.1 -3,-0.0 -2,-0.0 -0.505 10.3-157.1 -73.9 130.8 18.4 1.6 41.5 69 352 X I - 0 0 30 -2,-0.2 4,-0.1 -5,-0.2 6,-0.1 -0.950 21.7-117.5-112.8 122.9 16.0 2.6 38.7 70 353 X P > - 0 0 49 0, 0.0 3,-1.4 0, 0.0 -52,-0.0 -0.138 25.5-116.6 -57.0 156.8 13.1 4.9 39.8 71 354 X K T 3 S+ 0 0 197 1,-0.3 -2,-0.0 3,-0.0 0, 0.0 0.677 108.6 74.7 -80.3 -10.0 9.6 3.3 39.3 72 355 X T T 3 S+ 0 0 105 2,-0.0 2,-0.5 -62,-0.0 -61,-0.4 0.426 89.8 76.2 -73.2 2.7 8.6 5.9 36.7 73 356 X I S < S- 0 0 10 -3,-1.4 2,-0.4 -63,-0.1 -63,-0.2 -0.965 76.4-141.1-118.7 124.2 10.9 3.9 34.3 74 357 X T E -A 9 0A 94 -65,-2.1 -65,-2.1 -2,-0.5 2,-0.5 -0.723 16.7-156.8 -80.3 130.5 10.1 0.5 32.8 75 358 X V E +A 8 0A 59 -2,-0.4 2,-0.4 -67,-0.2 -67,-0.2 -0.941 13.6 178.3-114.1 119.6 13.1 -1.8 32.7 76 359 X S E -A 7 0A 51 -69,-2.2 -69,-2.4 -2,-0.5 2,-0.3 -0.954 11.5-156.1-119.4 145.9 13.1 -4.6 30.1 77 360 X T E +A 6 0A 84 -2,-0.4 2,-0.3 -71,-0.2 -71,-0.2 -0.906 31.6 123.0-117.4 147.4 15.8 -7.1 29.6 78 361 X G E -A 5 0A 27 -73,-1.8 -73,-3.1 -2,-0.3 2,-0.3 -0.901 47.4 -92.2-170.1-163.1 16.6 -9.1 26.4 79 362 X F E -A 4 0A 155 -2,-0.3 2,-0.3 -75,-0.3 -77,-0.0 -0.862 21.4-158.2-128.8 163.9 19.3 -9.8 23.8 80 363 X M E -A 3 0A 61 -77,-1.8 -77,-2.7 -2,-0.3 2,-0.3 -0.987 8.6-170.4-135.1 150.0 20.4 -8.4 20.4 81 364 X S 0 0 95 -2,-0.3 -79,-0.1 -79,-0.2 -2,-0.0 -0.768 360.0 360.0-138.1 94.1 22.4 -9.9 17.6 82 365 X I 0 0 197 -2,-0.3 -2,-0.1 0, 0.0 0, 0.0 -0.927 360.0 360.0-120.1 360.0 23.2 -7.1 15.2