==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HEPARIN-BINDING GROWTH FACTOR 16-MAR-99 1MKC . COMPND 2 MOLECULE: PROTEIN (MIDKINE); . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.IWASAKI,K.NAGATA,H.HATANAKA,K.OGURA,T.INUI,T.KIMURA, . 43 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3389.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 34.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 20.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 62 A a 0 0 96 0, 0.0 24,-0.2 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 143.1 -0.9 0.0 0.8 2 63 A K - 0 0 136 22,-0.3 2,-0.2 2,-0.0 24,-0.1 -0.327 360.0-120.5-124.1-151.9 -2.0 -3.4 -0.6 3 64 A Y + 0 0 144 21,-0.2 21,-0.2 -2,-0.1 2,-0.2 -0.673 46.0 133.4-162.5 102.2 -3.4 -6.6 0.8 4 65 A K E +A 23 0A 166 19,-1.1 19,-1.2 -2,-0.2 2,-0.3 -0.612 49.2 69.6-154.0 85.1 -1.8 -10.1 0.4 5 66 A F E S-A 22 0A 38 17,-0.2 2,-0.4 -2,-0.2 17,-0.2 -0.912 94.7 -36.2-169.7-161.8 -1.6 -12.1 3.6 6 67 A E - 0 0 160 15,-0.8 -2,-0.1 -2,-0.3 0, 0.0 -0.634 67.3-133.9 -77.3 127.3 -3.8 -14.0 6.1 7 68 A N - 0 0 118 -2,-0.4 2,-0.1 1,-0.1 14,-0.1 -0.071 21.6-104.4 -73.3-177.5 -7.0 -12.0 6.4 8 69 A W + 0 0 54 1,-0.1 -1,-0.1 12,-0.1 3,-0.0 -0.299 36.7 165.2 -99.5-171.3 -8.6 -11.1 9.7 9 70 A G - 0 0 66 -2,-0.1 2,-0.3 0, 0.0 -1,-0.1 0.034 60.7 -18.6-164.2 -74.3 -11.7 -12.5 11.5 10 71 A A S S- 0 0 78 2,-0.2 7,-0.0 7,-0.1 0, 0.0 -0.978 73.9 -86.4-154.8 138.8 -12.1 -11.7 15.2 11 72 A b S S+ 0 0 30 -2,-0.3 6,-0.2 7,-0.1 7,-0.1 0.100 95.5 39.2 -37.0 158.0 -9.8 -10.6 18.1 12 73 A D + 0 0 115 4,-0.3 -2,-0.2 1,-0.1 7,-0.2 -0.150 43.3 148.5 83.4 175.2 -8.0 -13.4 19.8 13 74 A G S S- 0 0 78 5,-0.1 -1,-0.1 3,-0.0 -2,-0.1 0.254 90.8 -43.0 138.4 -7.9 -6.5 -16.5 18.2 14 75 A G S S+ 0 0 70 3,-0.1 3,-0.0 0, 0.0 -2,-0.0 0.382 134.9 50.3 134.1 2.3 -3.5 -17.3 20.4 15 76 A T S S- 0 0 102 2,-0.2 3,-0.1 4,-0.0 -2,-0.0 0.589 103.3 -99.0-130.5 -58.5 -2.0 -13.8 21.1 16 77 A G S S+ 0 0 17 1,-0.7 27,-0.3 27,-0.1 -4,-0.3 -0.125 92.4 36.7 162.7 -53.2 -4.5 -11.2 22.2 17 78 A T S S- 0 0 21 26,-0.5 2,-0.8 -6,-0.2 -1,-0.7 -0.560 96.4 -84.3-112.1-177.4 -5.6 -9.0 19.3 18 79 A K - 0 0 25 -2,-0.2 2,-0.5 -7,-0.1 -7,-0.1 -0.774 53.5-179.5 -89.1 114.6 -6.3 -9.9 15.7 19 80 A V - 0 0 52 -2,-0.8 2,-0.6 -7,-0.2 21,-0.2 -0.940 14.2-176.8-119.1 130.6 -2.9 -9.7 14.0 20 81 A R - 0 0 32 -2,-0.5 19,-1.3 17,-0.2 17,-0.3 -0.910 13.3-155.8-122.3 107.4 -2.3 -10.4 10.3 21 82 A Q + 0 0 94 -2,-0.6 -15,-0.8 17,-0.3 17,-0.3 -0.564 57.0 47.0 -78.9 145.1 1.3 -10.2 9.2 22 83 A G E S-A 5 0A 9 -2,-0.2 15,-2.1 -17,-0.2 -17,-0.2 -0.713 104.3 -3.8 121.3-176.4 1.8 -9.5 5.6 23 84 A T E -A 4 0A 21 -19,-1.2 -19,-1.1 13,-0.3 2,-0.5 -0.295 67.9-169.6 -54.0 116.7 0.5 -7.0 3.0 24 85 A L - 0 0 0 11,-0.5 2,-2.2 -21,-0.2 -22,-0.3 -0.942 22.6-141.7-115.9 122.3 -2.1 -5.0 5.0 25 86 A K - 0 0 118 -2,-0.5 -22,-0.1 -24,-0.2 9,-0.1 -0.486 62.7 -79.8 -80.3 75.3 -4.4 -2.6 3.1 26 87 A K - 0 0 119 -2,-2.2 -1,-0.2 7,-0.2 9,-0.0 0.817 49.7-166.5 27.8 93.7 -4.4 0.1 5.9 27 88 A A - 0 0 19 -3,-0.0 -1,-0.2 1,-0.0 -2,-0.1 0.565 43.7-111.5 -81.1 -5.7 -6.9 -1.4 8.4 28 89 A R S S+ 0 0 208 3,-0.1 -2,-0.1 13,-0.0 4,-0.0 0.793 104.1 87.0 79.5 27.3 -7.0 2.0 10.1 29 90 A Y S S+ 0 0 111 2,-0.0 3,-0.2 0, 0.0 12,-0.1 0.642 89.0 35.9-120.1 -57.6 -5.2 0.3 13.0 30 91 A N S S- 0 0 35 1,-0.2 2,-2.3 10,-0.1 4,-0.1 0.864 84.4-170.0 -69.0 -32.7 -1.5 0.5 12.3 31 92 A A S S+ 0 0 77 1,-0.3 -1,-0.2 2,-0.1 -3,-0.1 -0.453 79.3 63.1 76.4 -74.3 -2.2 3.9 10.7 32 93 A Q S S- 0 0 190 -2,-2.3 -1,-0.3 -3,-0.2 3,-0.2 0.846 101.4-144.8 -51.5 -24.0 1.3 4.3 9.2 33 94 A a - 0 0 11 1,-0.2 2,-1.3 2,-0.1 -7,-0.2 0.877 17.9-166.1 63.9 41.6 0.0 1.3 7.3 34 95 A Q - 0 0 132 1,-0.2 -1,-0.2 -33,-0.1 -2,-0.1 -0.368 17.7-147.5 -58.3 95.6 3.3 -0.6 7.1 35 96 A E S S+ 0 0 61 -2,-1.3 2,-1.4 -3,-0.2 -11,-0.5 0.897 82.9 51.0 -36.4 -71.6 1.8 -2.9 4.5 36 97 A T S S+ 0 0 75 -13,-0.3 2,-0.3 -15,-0.1 -13,-0.3 -0.544 89.0 110.2 -78.2 100.6 3.7 -6.0 5.4 37 98 A I S S- 0 0 21 -15,-2.1 2,-1.5 -2,-1.4 -17,-0.2 -0.975 75.1-109.4-164.6 152.2 3.2 -6.3 9.1 38 99 A R - 0 0 172 -2,-0.3 -17,-0.3 -17,-0.3 -2,-0.1 -0.655 52.9-172.6 -82.6 90.4 1.5 -8.4 11.8 39 100 A V - 0 0 7 -2,-1.5 2,-0.3 -19,-1.3 -22,-0.1 -0.017 10.4-170.1 -77.8-172.3 -1.0 -5.7 12.7 40 101 A T + 0 0 69 -21,-0.2 -21,-0.1 -20,-0.1 -10,-0.1 -0.904 17.2 162.7-161.2-173.5 -3.5 -5.7 15.7 41 102 A K + 0 0 95 2,-0.4 -22,-0.1 -2,-0.3 -1,-0.1 0.161 62.5 41.7-177.3 -60.4 -6.5 -3.7 16.9 42 103 A P 0 0 47 0, 0.0 -25,-0.2 0, 0.0 -2,-0.0 0.964 360.0 360.0 -78.6 -85.0 -8.9 -5.1 19.5 43 104 A b 0 0 100 -27,-0.3 -26,-0.5 -31,-0.0 -2,-0.4 0.126 360.0 360.0-108.6 360.0 -7.4 -7.0 22.4