==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HEPARIN-BINDING GROWTH FACTOR 16-MAR-99 1MKN . COMPND 2 MOLECULE: PROTEIN (MIDKINE); . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.IWASAKI,K.NAGATA,H.HATANAKA,K.OGURA,T.INUI,T.KIMURA, . 59 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4878.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 32.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 16.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 203 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 45.7 -12.7 -9.0 5.7 2 2 A K + 0 0 132 2,-0.1 2,-0.5 1,-0.0 0, 0.0 -0.804 360.0 175.9-139.5 97.7 -10.1 -11.8 5.5 3 3 A K - 0 0 142 -2,-0.4 3,-0.4 1,-0.1 -1,-0.0 -0.214 66.0 -94.7 -93.6 46.4 -6.7 -11.1 4.0 4 4 A D - 0 0 136 -2,-0.5 2,-0.9 1,-0.2 3,-0.1 0.914 48.2-149.7 44.6 45.3 -5.4 -14.6 4.7 5 5 A K + 0 0 66 1,-0.2 -1,-0.2 4,-0.0 22,-0.0 -0.181 26.7 173.2 -47.3 91.0 -3.9 -13.0 7.9 6 6 A V + 0 0 30 -2,-0.9 2,-0.6 -3,-0.4 -1,-0.2 0.712 55.0 91.1 -78.7 -15.1 -0.9 -15.4 8.1 7 7 A K S S- 0 0 60 -3,-0.1 25,-0.0 2,-0.1 -2,-0.0 -0.675 103.7 -20.5 -80.9 121.0 0.4 -13.3 10.9 8 8 A K S S+ 0 0 110 -2,-0.6 38,-0.0 2,-0.1 26,-0.0 0.420 82.1 120.2 57.0 151.9 -0.9 -14.7 14.2 9 9 A G S S+ 0 0 67 -3,-0.0 -1,-0.1 0, 0.0 -2,-0.1 0.186 78.7 17.6 142.7 -13.9 -3.9 -17.0 14.2 10 10 A G - 0 0 38 1,-0.1 -2,-0.1 2,-0.0 35,-0.1 -0.862 56.8-142.4-179.5 144.1 -2.6 -20.2 15.7 11 11 A P + 0 0 111 0, 0.0 -1,-0.1 0, 0.0 34,-0.1 0.926 26.6 167.7 -78.2 -90.9 0.4 -21.5 17.7 12 12 A G - 0 0 33 1,-0.1 2,-0.4 34,-0.0 -2,-0.0 0.895 12.5-174.3 72.7 95.4 1.4 -25.0 16.5 13 13 A S + 0 0 97 33,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.977 21.0 127.6-126.9 126.8 4.8 -25.9 18.0 14 14 A E + 0 0 113 -2,-0.4 28,-0.0 1,-0.2 0, 0.0 -0.924 54.0 29.4-172.2 145.7 6.8 -29.1 17.0 15 15 A a - 0 0 63 -2,-0.3 -1,-0.2 24,-0.1 23,-0.0 0.989 61.0-151.3 63.5 78.3 10.3 -30.1 15.9 16 16 A A S S+ 0 0 102 -3,-0.1 -2,-0.1 1,-0.1 4,-0.1 0.956 96.1 41.8 -46.1 -57.1 12.5 -27.4 17.4 17 17 A E S S+ 0 0 181 2,-0.1 3,-0.2 22,-0.0 -1,-0.1 0.913 83.5 143.5 -52.7 -88.8 14.9 -27.8 14.6 18 18 A W S S- 0 0 16 1,-0.2 2,-1.6 21,-0.1 21,-0.3 0.712 75.1 -83.4 57.3 125.5 12.4 -28.1 11.8 19 19 A A E -A 38 0A 67 19,-1.5 19,-1.9 20,-0.1 2,-0.9 -0.344 63.9-177.0 -57.2 88.8 13.4 -26.5 8.4 20 20 A W E -A 37 0A 50 -2,-1.6 17,-0.2 17,-0.2 -1,-0.1 -0.782 14.1-150.9-101.2 101.8 12.2 -23.1 9.7 21 21 A G E -A 36 0A 24 15,-1.4 15,-0.6 -2,-0.9 16,-0.0 -0.141 34.9 -87.0 -59.1 166.5 12.5 -20.3 7.1 22 22 A P - 0 0 122 0, 0.0 14,-0.3 0, 0.0 -1,-0.1 -0.019 51.4 -86.3 -69.6 176.2 13.0 -16.8 8.4 23 23 A b - 0 0 35 12,-0.2 12,-0.2 26,-0.1 11,-0.1 -0.229 38.1-159.0 -79.8 174.7 10.2 -14.4 9.4 24 24 A T - 0 0 76 10,-0.4 2,-2.1 24,-0.1 10,-0.7 -0.932 24.7-123.2-159.0 132.1 8.3 -12.1 7.0 25 25 A P - 0 0 37 0, 0.0 8,-0.1 0, 0.0 6,-0.1 -0.494 27.0-176.2 -76.2 76.8 6.2 -9.0 7.5 26 26 A S S S+ 0 0 51 -2,-2.1 7,-0.1 6,-0.1 3,-0.1 0.781 83.2 12.5 -47.5 -23.1 3.0 -10.2 5.9 27 27 A S S S+ 0 0 73 5,-0.3 4,-0.1 3,-0.2 6,-0.0 0.460 134.3 8.3-119.1 -97.4 1.8 -6.7 6.6 28 28 A K S S- 0 0 176 2,-0.1 3,-0.0 1,-0.1 0, 0.0 0.587 94.2 -89.7 -61.7-132.7 4.1 -3.8 7.7 29 29 A D S S- 0 0 78 21,-0.1 24,-0.3 -5,-0.1 25,-0.2 0.126 96.9 -18.3-134.5 21.4 7.9 -4.6 7.5 30 30 A c S S+ 0 0 12 2,-0.2 -3,-0.2 22,-0.2 -4,-0.1 -0.521 89.2 102.4 178.4-104.7 8.5 -6.0 11.0 31 31 A G B S+C 50 0B 41 19,-0.5 19,-0.8 -2,-0.1 2,-0.4 0.008 105.0 16.6 34.0 -92.5 6.3 -5.6 14.2 32 32 A V S S+ 0 0 45 17,-0.2 -5,-0.3 15,-0.1 2,-0.2 -0.797 77.2 164.8-101.4 143.2 5.0 -9.1 13.8 33 33 A G - 0 0 0 15,-0.5 2,-0.3 -2,-0.4 -10,-0.1 -0.715 16.3-161.8-162.1 105.5 6.8 -11.6 11.6 34 34 A F - 0 0 12 -10,-0.7 -10,-0.4 13,-0.3 13,-0.3 -0.678 13.2-138.3 -91.5 146.6 6.4 -15.4 11.5 35 35 A R E - B 0 46A 97 11,-2.1 11,-1.5 -2,-0.3 2,-0.3 -0.256 21.3-154.7 -86.4-179.0 8.9 -17.8 10.0 36 36 A E E +AB 21 45A 105 -15,-0.6 -15,-1.4 -14,-0.3 9,-0.2 -0.915 30.7 102.4-161.6 133.9 7.6 -20.7 7.9 37 37 A G E -AB 20 44A 10 7,-1.9 7,-1.3 -2,-0.3 2,-0.3 -0.763 52.8 -71.3-173.1-141.6 8.8 -24.2 7.0 38 38 A T E -A 19 0A 65 -19,-1.9 -19,-1.5 5,-0.2 5,-0.2 -0.974 18.9-179.1-142.1 158.5 8.6 -28.0 7.6 39 39 A a S S- 0 0 44 -2,-0.3 -21,-0.1 -21,-0.3 -1,-0.1 0.630 71.9 -51.4-121.0 -66.9 9.6 -30.5 10.2 40 40 A G S S- 0 0 67 -22,-0.1 -25,-0.0 -25,-0.0 0, 0.0 0.328 120.2 -8.6-140.6 -77.2 8.6 -34.0 9.1 41 41 A A S S+ 0 0 105 -3,-0.0 2,-0.1 2,-0.0 -3,-0.0 0.145 125.2 63.5-116.7 17.9 5.0 -34.5 8.0 42 42 A Q + 0 0 94 2,-0.0 2,-0.2 -28,-0.0 -28,-0.0 -0.059 54.8 175.2-115.0-142.2 3.7 -31.1 9.1 43 43 A T + 0 0 68 -5,-0.2 2,-0.3 -2,-0.1 -5,-0.2 -0.432 18.0 122.2 141.7 144.8 4.6 -27.5 8.0 44 44 A Q E -B 37 0A 48 -7,-1.3 -7,-1.9 -2,-0.2 2,-0.3 -0.994 48.6 -77.8 165.2-167.1 3.3 -24.0 8.9 45 45 A R E -B 36 0A 105 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.860 25.6-171.9-125.4 162.4 4.2 -20.6 10.2 46 46 A I E -B 35 0A 25 -11,-1.5 -11,-2.1 -2,-0.3 -34,-0.0 -0.985 29.6-109.5-151.3 137.6 4.9 -19.1 13.7 47 47 A R + 0 0 95 -2,-0.3 -13,-0.3 -13,-0.3 2,-0.2 -0.045 31.6 176.7 -67.6 173.4 5.4 -15.4 14.5 48 48 A b - 0 0 32 -14,-0.1 -15,-0.5 -24,-0.1 -24,-0.1 -0.837 34.8-102.7-174.3 132.8 8.6 -13.7 15.6 49 49 A R - 0 0 199 -2,-0.2 -17,-0.2 -17,-0.2 -26,-0.1 -0.147 33.9-151.8 -59.9 161.9 9.4 -10.1 16.4 50 50 A V B -C 31 0B 38 -19,-0.8 2,-0.6 2,-0.0 -19,-0.5 -0.991 17.5-139.4-142.6 131.3 11.2 -8.0 13.8 51 51 A P - 0 0 99 0, 0.0 -21,-0.1 0, 0.0 -2,-0.0 -0.067 51.4-106.4 -79.2 35.8 13.6 -5.0 14.3 52 52 A c + 0 0 68 -2,-0.6 3,-0.4 1,-0.2 -22,-0.2 0.921 57.3 167.6 39.2 60.5 12.1 -3.2 11.2 53 53 A N + 0 0 82 -24,-0.3 3,-0.2 1,-0.2 -1,-0.2 -0.030 19.6 140.5 -92.8 33.7 15.3 -4.0 9.2 54 54 A W S S+ 0 0 155 1,-0.3 -1,-0.2 -25,-0.2 -2,-0.1 0.863 88.5 22.4 -44.8 -36.4 13.6 -2.9 5.9 55 55 A K S S- 0 0 95 -3,-0.4 -1,-0.3 3,-0.0 4,-0.2 0.539 96.0-137.3-108.0 -10.3 16.9 -1.3 5.0 56 56 A K S S+ 0 0 133 -3,-0.2 -2,-0.1 -4,-0.1 -3,-0.1 0.550 91.1 2.5 65.8 2.5 19.2 -3.4 7.3 57 57 A E S S- 0 0 155 -4,-0.0 2,-2.2 0, 0.0 -4,-0.1 0.046 71.2-140.8 148.3 95.4 20.9 0.0 8.0 58 58 A F 0 0 167 -2,-0.0 -2,-0.1 0, 0.0 -4,-0.0 -0.470 360.0 360.0 -75.1 81.1 19.7 3.4 6.6 59 59 A G 0 0 128 -2,-2.2 -4,-0.0 -4,-0.2 0, 0.0 -0.674 360.0 360.0 88.1 360.0 23.2 4.8 6.0