==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 04-SEP-02 1MN3 . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS9; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR G.PRAG,S.MISRA,E.JONES,R.GHIRLANDO,B.A.DAVIES,B.F.HORAZDOVSK . 54 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4713.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 64.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 398 A S > 0 0 94 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -42.4 -1.6 20.2 18.6 2 399 A S H > + 0 0 95 2,-0.2 4,-1.1 1,-0.2 5,-0.1 0.850 360.0 47.3 -68.7 -33.9 1.3 21.5 20.7 3 400 A L H > S+ 0 0 125 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.904 113.2 47.8 -72.5 -42.0 1.0 24.9 19.0 4 401 A I H > S+ 0 0 23 1,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.864 111.3 50.7 -65.8 -38.4 -2.7 25.1 19.5 5 402 A K H X S+ 0 0 115 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.799 109.4 51.4 -69.7 -29.2 -2.4 24.1 23.2 6 403 A K H X S+ 0 0 101 -4,-1.1 4,-1.9 2,-0.2 -2,-0.2 0.881 110.8 48.9 -72.0 -40.0 0.2 26.8 23.6 7 404 A I H X S+ 0 0 71 -4,-2.0 4,-1.7 2,-0.2 -2,-0.2 0.916 113.9 44.5 -65.3 -44.8 -2.2 29.2 22.0 8 405 A E H X S+ 0 0 44 -4,-2.6 4,-2.5 1,-0.2 5,-0.2 0.928 112.5 53.2 -64.8 -44.2 -5.0 28.1 24.3 9 406 A E H X S+ 0 0 96 -4,-2.3 4,-2.6 1,-0.2 5,-0.2 0.855 106.3 54.4 -58.2 -36.7 -2.6 28.2 27.3 10 407 A N H X S+ 0 0 69 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.900 109.9 44.6 -65.9 -42.9 -1.7 31.8 26.3 11 408 A E H X S+ 0 0 81 -4,-1.7 4,-1.9 2,-0.2 -2,-0.2 0.918 116.3 46.5 -69.0 -42.8 -5.3 33.0 26.4 12 409 A R H X S+ 0 0 93 -4,-2.5 4,-2.5 2,-0.2 5,-0.2 0.971 113.7 47.3 -61.5 -56.3 -6.1 31.2 29.7 13 410 A K H X S+ 0 0 113 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.876 113.3 49.1 -54.0 -42.2 -2.9 32.4 31.4 14 411 A D H X S+ 0 0 104 -4,-2.0 4,-1.9 -5,-0.2 -1,-0.2 0.856 110.1 50.4 -69.2 -35.9 -3.4 36.0 30.3 15 412 A T H X S+ 0 0 58 -4,-1.9 4,-2.2 -3,-0.2 -2,-0.2 0.944 111.6 48.1 -66.6 -46.9 -7.1 36.0 31.4 16 413 A L H X S+ 0 0 10 -4,-2.5 4,-3.9 1,-0.2 5,-0.2 0.892 108.7 55.3 -60.5 -41.1 -6.2 34.7 34.9 17 414 A N H X S+ 0 0 79 -4,-2.1 4,-2.5 -5,-0.2 -1,-0.2 0.947 109.3 44.6 -57.5 -52.7 -3.4 37.2 35.3 18 415 A T H X S+ 0 0 73 -4,-1.9 4,-1.5 1,-0.2 -1,-0.2 0.919 118.6 44.5 -58.5 -43.7 -5.6 40.2 34.7 19 416 A L H X S+ 0 0 30 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.901 109.8 55.2 -68.8 -41.0 -8.2 38.7 37.0 20 417 A Q H < S+ 0 0 60 -4,-3.9 3,-0.3 1,-0.2 6,-0.2 0.936 107.2 51.0 -55.6 -49.4 -5.7 37.7 39.6 21 418 A N H < S+ 0 0 126 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.873 113.9 43.6 -57.7 -39.8 -4.4 41.3 39.8 22 419 A X H < S+ 0 0 110 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.719 124.2 35.7 -80.1 -20.9 -7.9 42.7 40.2 23 420 A F >< + 0 0 106 -4,-1.9 3,-1.4 -3,-0.3 -1,-0.2 -0.553 69.5 163.5-133.8 69.7 -8.9 40.0 42.8 24 421 A P T 3 S+ 0 0 94 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.761 75.1 48.1 -54.8 -39.4 -5.7 39.3 44.9 25 422 A D T 3 S+ 0 0 164 2,-0.1 2,-0.4 3,-0.0 -5,-0.1 0.288 89.8 107.8 -92.1 10.8 -7.3 37.5 47.8 26 423 A X S < S- 0 0 83 -3,-1.4 -3,-0.1 -6,-0.2 5,-0.0 -0.757 81.0-110.9 -92.5 133.4 -9.3 35.2 45.5 27 424 A D >> - 0 0 93 -2,-0.4 4,-2.0 1,-0.2 3,-0.6 -0.431 25.2-137.4 -60.2 123.7 -8.4 31.6 45.2 28 425 A P H 3> S+ 0 0 62 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.831 101.8 57.3 -53.8 -36.6 -7.0 31.3 41.6 29 426 A S H 3> S+ 0 0 71 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.882 106.2 49.1 -64.2 -39.0 -8.9 28.0 41.1 30 427 A L H <> S+ 0 0 81 -3,-0.6 4,-2.6 2,-0.2 5,-0.2 0.937 109.0 52.6 -64.5 -47.3 -12.2 29.7 41.9 31 428 A I H X S+ 0 0 10 -4,-2.0 4,-2.4 1,-0.2 5,-0.3 0.898 110.9 48.7 -54.9 -41.9 -11.4 32.5 39.5 32 429 A E H X S+ 0 0 60 -4,-2.1 4,-2.7 2,-0.2 -2,-0.2 0.952 110.5 48.3 -64.0 -51.7 -10.7 29.9 36.8 33 430 A D H < S+ 0 0 127 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.891 118.4 42.2 -56.6 -42.0 -14.0 27.9 37.4 34 431 A V H < S+ 0 0 107 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.831 127.1 26.0 -76.0 -34.8 -16.0 31.1 37.3 35 432 A a H < S+ 0 0 67 -4,-2.4 2,-0.5 -5,-0.2 -3,-0.2 0.623 106.5 69.1-109.6 -15.8 -14.3 32.9 34.4 36 433 A I S < S- 0 0 36 -4,-2.7 -1,-0.1 -5,-0.3 4,-0.0 -0.927 79.7-115.7-114.4 131.7 -12.8 30.4 32.1 37 434 A A - 0 0 54 -2,-0.5 3,-0.1 1,-0.1 -3,-0.1 -0.253 20.3-123.9 -60.7 141.8 -14.8 27.9 29.9 38 435 A K S S+ 0 0 185 1,-0.2 2,-0.5 -5,-0.1 -1,-0.1 0.930 101.6 26.0 -49.5 -52.9 -14.4 24.2 30.6 39 436 A K S S- 0 0 179 3,-0.0 -1,-0.2 2,-0.0 -2,-0.1 -0.970 89.8-124.4-121.3 127.1 -13.4 23.6 27.0 40 437 A S - 0 0 33 -2,-0.5 3,-0.1 -3,-0.1 -32,-0.0 -0.178 2.2-143.3 -65.6 157.4 -11.7 26.3 24.8 41 438 A R S > S+ 0 0 204 1,-0.1 4,-2.5 2,-0.1 5,-0.2 0.525 82.7 88.7 -97.5 -8.0 -13.0 27.4 21.5 42 439 A I H > S+ 0 0 32 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.892 85.7 45.7 -57.2 -51.7 -9.5 27.9 20.0 43 440 A E H > S+ 0 0 84 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.932 115.9 46.0 -62.3 -47.0 -8.9 24.4 18.7 44 441 A P H > S+ 0 0 71 0, 0.0 4,-2.7 0, 0.0 -2,-0.2 0.948 115.6 46.2 -60.8 -49.0 -12.4 24.1 17.0 45 442 A a H X S+ 0 0 48 -4,-2.5 4,-2.7 1,-0.2 -2,-0.2 0.897 113.2 49.2 -62.5 -41.2 -12.2 27.5 15.5 46 443 A V H X S+ 0 0 40 -4,-2.6 4,-2.4 -5,-0.2 -1,-0.2 0.898 111.3 49.8 -66.0 -39.3 -8.6 26.9 14.3 47 444 A D H X S+ 0 0 76 -4,-2.4 4,-2.2 -5,-0.2 -2,-0.2 0.938 111.5 49.3 -63.9 -44.7 -9.7 23.6 12.7 48 445 A A H X S+ 0 0 49 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.933 112.1 47.7 -59.5 -46.8 -12.6 25.3 11.0 49 446 A L H X S+ 0 0 104 -4,-2.7 4,-2.1 1,-0.2 5,-0.2 0.879 107.9 55.3 -64.7 -36.9 -10.4 28.1 9.7 50 447 A L H X S+ 0 0 105 -4,-2.4 4,-1.4 1,-0.2 -1,-0.2 0.948 111.2 44.7 -60.6 -45.3 -7.8 25.6 8.4 51 448 A S H < S+ 0 0 76 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.880 115.1 48.9 -64.3 -38.4 -10.6 23.8 6.4 52 449 A L H < S+ 0 0 146 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.741 114.9 42.8 -74.0 -26.1 -12.0 27.1 5.2 53 450 A S H < 0 0 86 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.643 360.0 360.0 -96.3 -15.8 -8.6 28.5 4.0 54 451 A E < 0 0 210 -4,-1.4 -1,-0.1 -5,-0.2 -4,-0.0 -0.281 360.0 360.0 -56.6 360.0 -7.2 25.4 2.4