==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 25-JUL-96 1MNB . COMPND 2 MOLECULE: BIV TAR RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.D.PUGLISI,L.CHEN,S.BLANCHARD,A.D.FRANKEL . 14 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2025.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 1 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 279 0, 0.0 13,-0.0 0, 0.0 12,-0.0 0.000 360.0 360.0 360.0 99.2 -13.2 4.4 -3.2 2 2 A P - 0 0 67 0, 0.0 2,-0.3 0, 0.0 11,-0.1 0.248 360.0-117.4 -75.4-167.7 -9.6 4.5 -1.6 3 3 A R - 0 0 177 1,-0.2 9,-0.5 9,-0.0 0, 0.0 -0.754 29.0-172.3-128.7 83.5 -7.0 1.8 -0.5 4 4 A G S S+ 0 0 59 -2,-0.3 8,-2.0 7,-0.1 2,-0.2 0.900 72.1 13.5 -39.7 -72.6 -6.6 2.4 3.4 5 5 A T - 0 0 97 6,-0.2 6,-0.2 1,-0.0 3,-0.0 -0.484 69.0-142.3 -91.3 172.5 -3.7 -0.0 4.1 6 6 A R - 0 0 168 -2,-0.2 5,-0.1 4,-0.1 -2,-0.0 -0.014 63.7 -70.1-124.8 32.4 -1.5 -1.5 1.3 7 7 A G S S+ 0 0 47 3,-0.2 -1,-0.1 0, 0.0 4,-0.1 0.583 114.1 24.7 85.0 127.6 -1.0 -5.1 2.9 8 8 A K S S- 0 0 210 1,-0.1 0, 0.0 2,-0.1 0, 0.0 0.817 138.3 -42.6 51.0 43.2 1.0 -6.2 6.0 9 9 A G S S+ 0 0 57 1,-0.2 2,-0.2 0, 0.0 -1,-0.1 0.921 93.1 138.7 79.5 49.3 0.8 -2.6 7.6 10 10 A R - 0 0 148 2,-0.0 2,-0.3 0, 0.0 -3,-0.2 -0.517 39.3-137.7-104.3 176.5 1.4 0.1 4.9 11 11 A R + 0 0 235 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.925 36.2 131.0-147.8 122.4 -0.7 3.4 4.5 12 12 A I - 0 0 53 -8,-2.0 2,-0.3 -9,-0.5 -9,-0.0 -0.955 37.1-143.3-151.7 165.7 -2.2 5.3 1.5 13 13 A R 0 0 206 -2,-0.3 -9,-0.1 -11,-0.1 -2,-0.0 -0.876 360.0 360.0-136.6 107.7 -5.6 6.8 0.5 14 14 A R 0 0 222 -2,-0.3 -2,-0.0 -13,-0.0 0, 0.0 -0.640 360.0 360.0 74.0 360.0 -6.5 6.4 -3.3