==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 22-APR-10 3MOJ . COMPND 2 MOLECULE: RNA (69-MER); . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.W.HARDIN,Y.HU,D.B.MCKAY . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4711.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 62.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 22.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 404 B M 0 0 63 0, 0.0 46,-1.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 154.6 -36.9 -24.4 39.6 2 405 B K E -A 46 0A 96 44,-0.2 72,-2.9 72,-0.1 2,-0.3 -0.660 360.0-157.9 -82.2 130.3 -34.5 -21.4 39.7 3 406 B L E -AB 45 73A 0 42,-2.0 42,-2.0 -2,-0.4 2,-0.4 -0.846 5.8-142.4-111.5 146.3 -32.7 -20.8 36.4 4 407 B Y E -AB 44 72A 74 68,-2.4 68,-1.5 -2,-0.3 2,-0.4 -0.838 13.0-170.7-103.5 141.5 -29.4 -19.0 35.7 5 408 B F E -AB 43 71A 0 38,-1.5 38,-1.7 -2,-0.4 2,-1.7 -0.998 28.6-135.2-130.0 131.7 -28.8 -16.8 32.7 6 409 B N S S+ 0 0 23 64,-1.8 2,-0.3 -2,-0.4 36,-0.2 -0.062 83.1 93.4 -72.2 40.0 -25.4 -15.4 31.7 7 410 B G + 0 0 0 -2,-1.7 32,-0.3 63,-0.2 2,-0.3 -0.981 44.0 123.6-136.0 147.6 -27.3 -12.2 31.1 8 411 B G S > >S- 0 0 0 -2,-0.3 3,-3.1 32,-0.2 5,-1.7 -0.926 70.8 -32.7-174.7-164.7 -28.0 -9.1 33.2 9 412 B K G > 5S+ 0 0 132 30,-3.0 3,-2.0 1,-0.3 31,-0.2 0.810 126.5 57.7 -41.2 -43.0 -27.7 -5.4 33.6 10 413 B K G 3 5S+ 0 0 130 30,-2.1 -1,-0.3 29,-0.3 31,-0.1 0.577 109.0 44.1 -76.9 -8.6 -24.4 -5.3 31.7 11 414 B K G < 5S- 0 0 80 -3,-3.1 -1,-0.3 29,-0.2 -2,-0.2 0.181 121.6-111.8-108.4 12.0 -26.0 -6.9 28.7 12 415 B K T < 5 + 0 0 147 -3,-2.0 -3,-0.2 -4,-0.4 2,-0.2 0.760 63.3 157.3 66.5 28.4 -28.9 -4.5 29.2 13 416 B I < - 0 0 8 -5,-1.7 2,-0.3 3,-0.0 -1,-0.2 -0.550 18.6-171.5 -79.8 148.7 -31.3 -7.3 30.1 14 417 B R > - 0 0 145 -2,-0.2 4,-1.1 -6,-0.1 3,-0.3 -0.934 40.6 -98.9-139.8 162.4 -34.4 -6.5 32.2 15 418 B A H > S+ 0 0 47 -2,-0.3 4,-2.1 1,-0.2 3,-0.3 0.831 121.2 54.2 -50.8 -35.2 -37.1 -8.4 34.0 16 419 B V H >>S+ 0 0 75 1,-0.2 4,-3.5 2,-0.2 5,-0.5 0.941 93.8 64.1 -67.5 -51.0 -39.4 -7.8 31.0 17 420 B D H >5S+ 0 0 25 -3,-0.3 4,-1.1 1,-0.2 48,-0.3 0.804 112.9 40.1 -45.9 -33.1 -37.1 -9.2 28.3 18 421 B F H X5S+ 0 0 0 -4,-1.1 4,-2.5 -3,-0.3 5,-0.3 0.966 114.2 49.3 -73.9 -69.8 -37.5 -12.5 30.1 19 422 B V H X5S+ 0 0 55 -4,-2.1 4,-2.0 1,-0.3 5,-0.2 0.840 118.4 41.9 -36.0 -52.4 -41.2 -12.3 31.0 20 423 B G H X5S+ 0 0 22 -4,-3.5 4,-1.2 1,-0.2 -1,-0.3 0.923 114.7 48.7 -64.1 -46.3 -42.0 -11.4 27.4 21 424 B T H < S-D 28 0B 40 -2,-2.3 3,-3.0 3,-0.6 2,-0.6 -0.970 82.4-113.1-132.4 121.5 -44.1 -20.3 24.2 26 429 B D T 3 S+ 0 0 161 -2,-0.4 3,-0.1 1,-0.3 -2,-0.1 -0.284 108.1 30.5 -51.5 98.8 -46.9 -22.8 23.5 27 430 B G T 3 S+ 0 0 48 -2,-0.6 2,-0.4 1,-0.2 -1,-0.3 0.157 103.6 84.5 138.5 -15.4 -47.2 -24.4 26.9 28 431 B V B < -D 25 0B 11 -3,-3.0 -3,-0.6 -5,-0.3 2,-0.3 -0.955 51.8-163.6-127.6 132.4 -46.2 -21.6 29.3 29 432 B S > - 0 0 57 -2,-0.4 3,-1.9 -5,-0.1 4,-0.2 -0.738 35.6-112.0-107.6 159.5 -48.2 -18.7 30.8 30 433 B A G > S+ 0 0 52 1,-0.3 3,-0.6 -2,-0.3 -7,-0.1 0.586 113.4 68.7 -64.7 -10.8 -46.9 -15.6 32.5 31 434 B D G 3 S+ 0 0 138 1,-0.2 -1,-0.3 -8,-0.1 -3,-0.0 0.581 88.0 66.5 -84.3 -10.9 -48.3 -16.9 35.8 32 435 B D G < S+ 0 0 8 -3,-1.9 16,-3.8 15,-0.1 2,-0.7 0.548 80.6 92.5 -85.2 -12.0 -45.6 -19.6 35.8 33 436 B I E < -C 47 0A 21 -3,-0.6 14,-0.2 14,-0.2 3,-0.1 -0.779 56.8-175.9 -91.3 115.3 -42.8 -17.1 36.2 34 437 B G E - 0 0 24 12,-2.6 -1,-0.1 -2,-0.7 14,-0.1 0.367 49.9 -15.8 -82.9-141.8 -41.8 -16.6 39.8 35 438 B I E - 0 0 128 10,-0.1 11,-2.8 12,-0.1 2,-0.4 -0.349 58.1-159.5 -64.9 140.9 -39.3 -14.1 41.1 36 439 B I E -C 45 0A 35 9,-0.2 2,-0.5 -3,-0.1 9,-0.2 -0.988 4.9-169.2-121.1 135.6 -36.8 -12.6 38.6 37 440 B T E -C 44 0A 63 7,-3.3 7,-2.0 -2,-0.4 2,-0.2 -0.862 5.5-159.7-131.8 96.1 -33.6 -11.2 39.9 38 441 B I E +C 43 0A 54 -2,-0.5 2,-0.2 5,-0.2 5,-0.2 -0.508 20.5 167.0 -76.5 143.0 -31.4 -9.2 37.5 39 442 B M - 0 0 66 3,-0.7 -30,-3.0 -32,-0.3 -29,-0.3 -0.657 50.3 -71.3-138.8-165.5 -27.8 -8.7 38.4 40 443 B D S S- 0 0 122 -32,-0.2 -30,-2.1 -2,-0.2 -32,-0.2 0.936 120.2 -12.6 -64.7 -50.4 -24.5 -7.6 36.8 41 444 B N S S+ 0 0 92 -34,-0.2 2,-0.4 1,-0.2 -1,-0.2 0.342 128.7 60.3-132.9 2.4 -23.9 -10.5 34.5 42 445 B A - 0 0 12 -36,-0.2 -3,-0.7 -38,-0.0 2,-0.4 -0.993 57.2-158.3-137.5 141.1 -26.5 -13.1 35.7 43 446 B S E -AC 5 38A 0 -38,-1.7 -38,-1.5 -2,-0.4 2,-0.5 -0.962 8.3-152.1-115.4 135.2 -30.2 -13.2 36.0 44 447 B Y E +AC 4 37A 75 -7,-2.0 -7,-3.3 -2,-0.4 2,-0.4 -0.918 18.8 177.6 -98.1 130.0 -32.1 -15.6 38.3 45 448 B V E -AC 3 36A 0 -42,-2.0 -42,-2.0 -2,-0.5 2,-0.3 -0.948 16.8-145.5-138.9 122.8 -35.6 -16.5 37.1 46 449 B E E -A 2 0A 56 -11,-2.8 -12,-2.6 -2,-0.4 2,-0.4 -0.592 6.2-154.2 -88.9 137.9 -37.8 -18.9 38.9 47 450 B I E - C 0 33A 3 -46,-1.8 3,-0.3 -2,-0.3 -14,-0.2 -0.933 12.3-157.0-110.3 137.4 -40.3 -21.2 37.2 48 451 B L > + 0 0 77 -16,-3.8 3,-1.2 -2,-0.4 -16,-0.1 -0.623 63.4 37.1-106.6 165.5 -43.4 -22.4 38.9 49 452 B N T 3 S- 0 0 120 1,-0.3 -1,-0.2 -2,-0.2 -17,-0.0 0.788 119.0 -75.4 70.7 28.8 -45.7 -25.5 38.5 50 453 B G T 3 S+ 0 0 71 -3,-0.3 4,-0.3 1,-0.2 -1,-0.3 0.551 102.6 123.7 61.0 7.6 -42.9 -27.9 37.6 51 454 B K <> + 0 0 81 -3,-1.2 4,-1.6 1,-0.2 5,-0.2 0.232 42.0 104.0 -81.1 15.9 -42.6 -26.4 34.2 52 455 B G H > S+ 0 0 0 -5,-0.2 4,-2.3 2,-0.2 5,-0.2 0.991 74.8 42.7 -56.9 -76.2 -39.0 -25.7 34.9 53 456 B P H > S+ 0 0 74 0, 0.0 4,-2.8 0, 0.0 -1,-0.2 0.808 112.3 56.0 -46.3 -42.9 -37.1 -28.4 32.9 54 457 B H H 4 S+ 0 0 101 -4,-0.3 3,-0.4 2,-0.2 5,-0.2 0.983 110.2 42.3 -55.0 -66.9 -39.3 -27.9 29.9 55 458 B V H >X S+ 0 0 2 -4,-1.6 4,-1.8 1,-0.2 3,-1.3 0.893 113.2 55.4 -40.6 -53.9 -38.6 -24.2 29.6 56 459 B L H >X S+ 0 0 21 -4,-2.3 4,-1.3 1,-0.3 2,-1.0 0.921 104.7 51.8 -48.4 -52.6 -34.9 -24.8 30.3 57 460 B K H 3< S+ 0 0 166 -4,-2.8 -1,-0.3 -3,-0.4 -2,-0.2 -0.097 116.7 41.1 -81.8 40.5 -34.7 -27.3 27.4 58 461 B V H <4 S+ 0 0 41 -3,-1.3 3,-0.5 -2,-1.0 -1,-0.2 0.292 105.0 60.6-154.5 -26.0 -36.2 -24.7 25.0 59 462 B M H X< S+ 0 0 7 -4,-1.8 3,-1.2 -3,-0.6 10,-0.4 0.732 78.3 93.9 -79.7 -26.2 -34.4 -21.6 26.2 60 463 B K T 3< S+ 0 0 93 -4,-1.3 -1,-0.2 1,-0.3 -3,-0.1 0.732 103.2 18.2 -35.6 -37.0 -31.1 -23.3 25.3 61 464 B N T 3 S+ 0 0 113 -3,-0.5 2,-0.3 7,-0.1 -1,-0.3 -0.520 93.0 115.1-144.2 73.4 -31.4 -21.6 21.9 62 465 B T < - 0 0 47 -3,-1.2 2,-0.7 7,-0.2 7,-0.3 -0.977 65.1-112.5-144.4 129.5 -33.9 -18.6 21.8 63 466 B T - 0 0 102 -2,-0.3 2,-0.7 5,-0.1 3,-0.1 -0.426 31.8-173.4 -64.7 104.9 -33.1 -15.0 21.2 64 467 B V S S- 0 0 0 -2,-0.7 3,-0.1 3,-0.3 -46,-0.1 -0.911 83.4 -13.6 -97.8 115.4 -33.8 -13.1 24.4 65 468 B K S S- 0 0 103 -2,-0.7 -1,-0.2 -48,-0.3 -2,-0.1 0.763 132.2 -59.4 62.9 22.3 -33.5 -9.4 23.7 66 469 B G S S+ 0 0 61 -3,-0.1 -1,-0.2 1,-0.1 2,-0.1 0.904 121.4 95.3 73.0 44.8 -31.9 -10.6 20.5 67 470 B K - 0 0 124 -3,-0.1 -3,-0.3 -5,-0.1 -5,-0.1 -0.576 65.1-140.2-166.7 97.1 -29.0 -12.6 22.1 68 471 B Q - 0 0 101 -2,-0.1 2,-0.3 -5,-0.1 -5,-0.1 -0.243 34.8-176.1 -56.2 148.8 -29.0 -16.3 22.9 69 472 B L - 0 0 10 -10,-0.4 2,-0.2 -7,-0.3 -7,-0.2 -0.936 32.5 -76.5-149.2 163.2 -27.4 -17.0 26.2 70 473 B K + 0 0 142 -2,-0.3 -64,-1.8 -64,-0.1 2,-0.4 -0.485 53.0 174.9 -61.1 125.7 -26.2 -19.6 28.7 71 474 B V E +B 5 0A 6 -2,-0.2 2,-0.2 -66,-0.2 -66,-0.2 -0.994 12.0 117.1-132.9 143.5 -29.1 -21.0 30.6 72 475 B N E -B 4 0A 79 -68,-1.5 -68,-2.4 -2,-0.4 3,-0.2 -0.834 62.8 -38.4 171.5 167.9 -29.4 -23.7 33.2 73 476 B K E S-B 3 0A 126 -2,-0.2 2,-0.3 -70,-0.2 -70,-0.3 0.074 70.5-101.7 -37.6 125.5 -30.3 -24.8 36.7 74 477 B A 0 0 12 -72,-2.9 -1,-0.2 1,-0.2 -72,-0.1 -0.375 360.0 360.0 -55.9 112.5 -29.1 -22.2 39.3 75 478 B N 0 0 201 -2,-0.3 -1,-0.2 -3,-0.2 -2,-0.1 -0.448 360.0 360.0 148.6 360.0 -25.9 -23.5 40.8