==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 11-SEP-02 1MP1 . COMPND 2 MOLECULE: SER/ARG-RELATED NUCLEAR MATRIX PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.R.SZYMCZYNA,J.BOWMAN,S.MCCRACKEN,A.PINEDA-LUCENA,Y.LU, . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7365.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 54.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 36.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A S 0 0 133 0, 0.0 3,-0.2 0, 0.0 60,-0.0 0.000 360.0 360.0 360.0 123.2 -9.0 -8.7 -12.4 2 25 A H + 0 0 143 1,-0.3 2,-0.4 0, 0.0 63,-0.1 0.937 360.0 1.7 -79.2 -52.2 -6.8 -11.6 -11.4 3 26 A M - 0 0 55 61,-0.1 -1,-0.3 2,-0.0 2,-0.2 -0.952 69.7-146.2-144.6 120.1 -8.7 -12.5 -8.2 4 27 A Q + 0 0 155 -2,-0.4 2,-0.3 -3,-0.2 57,-0.0 -0.599 35.4 136.8 -85.5 145.0 -11.9 -10.9 -6.9 5 28 A L - 0 0 37 -2,-0.2 2,-0.3 67,-0.0 59,-0.1 -0.897 50.6 -72.0-164.2-171.0 -12.5 -10.6 -3.2 6 29 A K - 0 0 183 -2,-0.3 2,-0.2 57,-0.1 70,-0.1 -0.747 41.6-168.2-101.9 149.4 -13.7 -8.2 -0.4 7 30 A F - 0 0 62 -2,-0.3 69,-0.1 1,-0.2 2,-0.1 -0.447 24.5 -87.3-119.9-167.0 -11.8 -5.2 0.8 8 31 A A - 0 0 11 -2,-0.2 -1,-0.2 1,-0.1 55,-0.0 -0.149 25.3-124.9 -92.8-169.2 -12.0 -2.8 3.7 9 32 A E S > S+ 0 0 157 2,-0.1 3,-3.4 -2,-0.1 -1,-0.1 0.737 103.0 66.7-107.3 -38.8 -13.9 0.4 4.1 10 33 A C G > S+ 0 0 52 1,-0.3 3,-1.6 2,-0.2 4,-0.1 0.726 86.5 76.9 -55.9 -20.2 -11.1 2.9 5.0 11 34 A L G > S+ 0 0 2 1,-0.3 3,-0.7 2,-0.1 48,-0.3 0.611 81.5 68.4 -65.6 -11.1 -10.0 2.1 1.4 12 35 A E G < S+ 0 0 110 -3,-3.4 -1,-0.3 1,-0.2 -2,-0.2 0.102 71.7 91.7 -94.2 20.3 -12.8 4.4 0.5 13 36 A K G < S- 0 0 141 -3,-1.6 -1,-0.2 1,-0.1 -2,-0.1 0.513 80.6-153.4 -89.4 -7.8 -10.9 7.3 1.9 14 37 A K < - 0 0 142 -3,-0.7 2,-0.2 -4,-0.1 -1,-0.1 0.183 8.5-145.6 55.2 175.2 -9.4 7.9 -1.5 15 38 A V - 0 0 8 42,-0.2 2,-0.1 40,-0.1 3,-0.1 -0.799 10.1-133.0-154.2-166.6 -6.0 9.5 -1.9 16 39 A D >> - 0 0 41 -2,-0.2 4,-2.8 40,-0.1 3,-2.3 -0.562 8.9-174.0-167.5 93.7 -4.0 11.9 -4.1 17 40 A M T 34 S+ 0 0 22 38,-0.7 5,-0.2 1,-0.3 38,-0.1 0.752 89.8 67.0 -61.5 -24.9 -0.5 11.0 -5.2 18 41 A S T 34 S+ 0 0 86 37,-0.4 -1,-0.3 1,-0.2 3,-0.1 0.549 114.1 30.3 -72.6 -7.1 -0.3 14.4 -6.8 19 42 A K T <4 S+ 0 0 116 -3,-2.3 2,-0.3 1,-0.2 -2,-0.2 0.657 123.4 47.1-117.3 -37.6 -0.5 15.7 -3.2 20 43 A V S < S- 0 0 0 -4,-2.8 2,-0.5 75,-0.1 -1,-0.2 -0.798 84.5-115.6-109.8 152.0 1.3 12.9 -1.3 21 44 A N - 0 0 75 74,-2.5 -3,-0.1 -2,-0.3 68,-0.1 -0.750 22.2-175.5 -89.5 128.2 4.5 11.2 -2.2 22 45 A L S >> S+ 0 0 25 -2,-0.5 3,-2.0 -5,-0.2 4,-0.6 0.712 79.9 70.1 -91.3 -26.1 4.2 7.5 -3.0 23 46 A E G >4 S+ 0 0 132 1,-0.3 3,-1.1 2,-0.2 5,-0.2 0.861 92.8 57.7 -58.2 -37.7 8.0 7.1 -3.4 24 47 A V G 34 S+ 0 0 34 1,-0.3 -1,-0.3 71,-0.2 4,-0.2 0.552 109.6 46.9 -69.9 -6.6 8.2 7.5 0.4 25 48 A I G <> S+ 0 0 0 -3,-2.0 4,-4.8 2,-0.1 5,-0.4 0.451 88.5 85.7-109.9 -8.5 5.9 4.6 0.5 26 49 A K H S+ 0 0 43 0, 0.0 4,-1.5 0, 0.0 -1,-0.2 0.771 119.4 50.3 -75.0 -27.8 10.1 1.3 0.8 28 51 A W H > S+ 0 0 37 2,-0.2 4,-2.4 3,-0.2 -2,-0.2 0.924 119.2 36.0 -74.2 -47.3 7.1 1.1 3.2 29 52 A I H X S+ 0 0 0 -4,-4.8 4,-4.2 2,-0.2 5,-0.4 0.950 120.2 47.8 -69.7 -51.4 5.0 -0.8 0.7 30 53 A T H X S+ 0 0 14 -4,-3.1 4,-1.8 -5,-0.4 11,-0.2 0.863 117.5 43.9 -57.0 -38.1 7.9 -2.8 -0.7 31 54 A K H X S+ 0 0 118 -4,-1.5 4,-3.1 2,-0.2 -1,-0.2 0.873 115.7 48.1 -74.1 -39.3 9.0 -3.6 2.9 32 55 A R H X S+ 0 0 54 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.946 115.2 43.3 -65.5 -50.7 5.4 -4.3 3.9 33 56 A V H X S+ 0 0 0 -4,-4.2 4,-1.4 2,-0.2 5,-0.4 0.884 118.1 47.1 -61.9 -39.8 4.7 -6.6 1.0 34 57 A T H X S+ 0 0 29 -4,-1.8 4,-3.4 -5,-0.4 -2,-0.2 0.894 115.7 43.9 -68.2 -41.9 8.1 -8.2 1.5 35 58 A E H < S+ 0 0 129 -4,-3.1 -2,-0.2 2,-0.2 -1,-0.2 0.784 103.9 67.0 -72.7 -28.8 7.5 -8.5 5.2 36 59 A I H < S+ 0 0 24 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.923 126.6 8.8 -56.6 -47.4 4.0 -9.7 4.5 37 60 A L H < S- 0 0 49 -4,-1.4 -2,-0.2 2,-0.3 -3,-0.2 0.819 105.7-114.2 -99.6 -46.3 5.4 -12.9 3.0 38 61 A G S < S+ 0 0 59 -4,-3.4 2,-0.3 1,-0.4 -3,-0.2 0.191 86.1 78.0 127.7 -10.8 9.1 -12.5 3.9 39 62 A F S S- 0 0 119 -6,-0.3 2,-0.7 -5,-0.2 -1,-0.4 -0.919 89.0 -97.1-128.6 154.3 10.5 -12.1 0.4 40 63 A E - 0 0 71 -2,-0.3 -9,-0.1 -3,-0.1 -6,-0.1 -0.590 45.4-167.1 -72.8 110.6 10.6 -9.2 -2.1 41 64 A D - 0 0 7 -2,-0.7 -1,-0.1 -11,-0.2 -7,-0.1 0.303 15.8-168.6 -75.5-151.5 7.7 -9.7 -4.5 42 65 A D S > S+ 0 0 117 0, 0.0 4,-3.6 0, 0.0 5,-0.2 0.147 78.2 57.3-168.9 -48.5 7.3 -7.9 -7.8 43 66 A V H > S+ 0 0 62 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.913 116.1 39.5 -64.9 -44.2 3.8 -8.5 -9.1 44 67 A V H > S+ 0 0 0 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.898 117.8 49.3 -71.3 -42.3 2.3 -7.2 -5.9 45 68 A I H > S+ 0 0 15 1,-0.2 4,-3.9 2,-0.2 5,-0.2 0.936 110.5 50.2 -61.5 -48.7 4.8 -4.4 -5.7 46 69 A E H X S+ 0 0 113 -4,-3.6 4,-4.9 1,-0.2 5,-0.4 0.884 107.3 55.7 -56.5 -41.6 4.3 -3.5 -9.3 47 70 A F H X S+ 0 0 35 -4,-1.7 4,-2.0 2,-0.2 -1,-0.2 0.914 115.0 37.2 -57.5 -46.9 0.5 -3.4 -8.7 48 71 A I H X S+ 0 0 0 -4,-2.0 4,-3.6 2,-0.2 -2,-0.2 0.909 121.6 46.1 -71.6 -44.2 1.0 -0.8 -5.9 49 72 A F H < S+ 0 0 73 -4,-3.9 4,-0.3 2,-0.2 -2,-0.2 0.932 116.7 43.5 -63.5 -48.7 3.8 1.0 -7.7 50 73 A N H < S+ 0 0 70 -4,-4.9 3,-0.3 -5,-0.2 -1,-0.2 0.877 120.2 43.5 -64.1 -38.8 1.9 1.0 -11.0 51 74 A Q H >< S+ 0 0 42 -4,-2.0 3,-1.3 -5,-0.4 -2,-0.2 0.862 113.8 49.3 -73.6 -38.2 -1.2 2.0 -9.1 52 75 A L T 3< S+ 0 0 3 -4,-3.6 -1,-0.2 1,-0.3 -2,-0.2 0.456 96.4 75.6 -79.1 -1.2 0.7 4.5 -6.9 53 76 A E T 3 S+ 0 0 136 -3,-0.3 -1,-0.3 -4,-0.3 -2,-0.2 0.475 90.7 68.4 -86.8 -4.3 2.1 5.8 -10.2 54 77 A V S < S- 0 0 57 -3,-1.3 -37,-0.1 -5,-0.1 -38,-0.1 -0.290 89.2-116.9-101.6-171.5 -1.2 7.5 -10.9 55 78 A K S S+ 0 0 137 1,-0.2 -38,-0.7 -38,-0.1 -37,-0.4 0.597 107.9 32.4-101.6 -18.8 -3.0 10.4 -9.3 56 79 A N S S- 0 0 111 -40,-0.2 -1,-0.2 -5,-0.1 2,-0.1 -0.741 78.6-166.2-143.2 89.2 -5.9 8.3 -8.1 57 80 A P - 0 0 12 0, 0.0 2,-0.9 0, 0.0 -42,-0.2 -0.376 23.4-122.2 -75.1 154.4 -5.1 4.7 -7.3 58 81 A D >> - 0 0 80 1,-0.2 4,-2.1 -2,-0.1 3,-0.9 -0.826 18.8-169.2-101.7 96.5 -7.8 2.1 -6.8 59 82 A S H 3> S+ 0 0 5 -2,-0.9 4,-3.0 -48,-0.3 5,-0.3 0.802 88.2 64.0 -51.7 -30.9 -7.4 0.7 -3.3 60 83 A K H 3> S+ 0 0 48 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.934 106.1 41.0 -59.1 -48.7 -9.9 -1.9 -4.5 61 84 A M H <> S+ 0 0 48 -3,-0.9 4,-3.0 2,-0.2 5,-0.2 0.831 113.1 56.5 -68.1 -33.8 -7.5 -3.2 -7.1 62 85 A M H X S+ 0 0 0 -4,-2.1 4,-3.0 2,-0.2 -2,-0.2 0.952 114.1 36.4 -62.4 -53.0 -4.6 -2.8 -4.6 63 86 A Q H X S+ 0 0 1 -4,-3.0 4,-2.8 2,-0.2 -2,-0.2 0.834 118.6 52.4 -69.0 -33.9 -6.2 -5.1 -2.0 64 87 A I H < S+ 0 0 21 -4,-2.2 4,-0.5 -5,-0.3 -2,-0.2 0.887 115.2 40.7 -68.4 -40.5 -7.6 -7.3 -4.7 65 88 A N H >< S+ 0 0 3 -4,-3.0 3,-0.6 2,-0.2 4,-0.4 0.889 115.5 50.9 -73.6 -41.4 -4.2 -7.6 -6.2 66 89 A L H >X S+ 0 0 0 -4,-3.0 4,-4.6 1,-0.3 3,-2.4 0.919 105.1 56.1 -61.1 -45.6 -2.5 -8.0 -2.8 67 90 A T T 3< S+ 0 0 30 -4,-2.8 -1,-0.3 1,-0.3 -2,-0.2 0.738 96.2 67.8 -58.4 -23.0 -5.0 -10.7 -1.9 68 91 A G T <4 S+ 0 0 34 -3,-0.6 -1,-0.3 -4,-0.5 -2,-0.2 0.721 121.7 14.5 -69.2 -22.2 -3.8 -12.4 -5.0 69 92 A F T <4 S+ 0 0 104 -3,-2.4 -2,-0.2 -4,-0.4 -3,-0.1 0.695 120.6 66.4-117.6 -45.3 -0.4 -12.9 -3.2 70 93 A L S < S- 0 0 14 -4,-4.6 -33,-0.0 -5,-0.1 -37,-0.0 0.198 97.8 -98.3 -64.3-166.8 -1.1 -12.1 0.4 71 94 A N - 0 0 140 -35,-0.0 -4,-0.1 -3,-0.0 -1,-0.1 0.527 55.2-112.6 -93.9 -10.2 -3.3 -14.3 2.6 72 95 A G S > S+ 0 0 19 -6,-0.1 4,-1.1 -9,-0.1 -5,-0.1 -0.309 111.2 64.2 108.6 -46.4 -6.2 -11.9 2.1 73 96 A K H > S+ 0 0 172 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.838 99.7 53.2 -76.5 -35.2 -6.3 -10.6 5.7 74 97 A N H > S+ 0 0 51 1,-0.2 4,-3.5 2,-0.2 -1,-0.2 0.812 103.4 58.7 -68.1 -31.0 -2.9 -9.1 5.4 75 98 A A H > S+ 0 0 0 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.894 107.5 45.6 -64.3 -41.4 -4.1 -7.3 2.3 76 99 A R H X S+ 0 0 143 -4,-1.1 4,-1.5 2,-0.2 -2,-0.2 0.882 117.9 43.0 -68.5 -40.2 -6.8 -5.6 4.3 77 100 A E H < S+ 0 0 120 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.857 114.1 51.8 -73.2 -37.1 -4.4 -4.8 7.1 78 101 A F H >X S+ 0 0 0 -4,-3.5 4,-1.8 1,-0.2 3,-1.4 0.933 112.9 43.2 -64.4 -48.7 -1.7 -3.7 4.6 79 102 A M H 3X S+ 0 0 0 -4,-2.6 4,-2.5 1,-0.3 -1,-0.2 0.825 108.6 59.5 -66.3 -32.9 -4.1 -1.4 2.8 80 103 A G H 3< S+ 0 0 27 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.260 113.5 39.7 -79.5 12.6 -5.4 -0.1 6.1 81 104 A E H <4 S+ 0 0 81 -3,-1.4 4,-0.3 3,-0.1 -2,-0.2 0.541 123.5 34.6-128.8 -29.5 -1.9 1.0 6.9 82 105 A L H X S+ 0 0 0 -4,-1.8 4,-1.7 2,-0.2 5,-0.2 0.776 114.3 56.3 -96.8 -36.3 -0.7 2.3 3.5 83 106 A W H X S+ 0 0 4 -4,-2.5 4,-1.1 -5,-0.3 -3,-0.2 0.906 114.4 41.2 -61.2 -42.7 -4.0 3.8 2.4 84 107 A P H > S+ 0 0 46 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.770 105.1 66.7 -75.0 -27.7 -4.0 5.8 5.6 85 108 A L H > S+ 0 0 18 -4,-0.3 4,-1.7 1,-0.2 -2,-0.2 0.898 105.0 43.0 -58.6 -42.5 -0.3 6.5 5.3 86 109 A L H X S+ 0 0 0 -4,-1.7 4,-4.3 2,-0.2 5,-0.3 0.830 104.6 65.8 -71.8 -33.4 -1.1 8.6 2.2 87 110 A L H < S+ 0 0 31 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.898 110.5 36.3 -54.0 -43.8 -4.1 10.1 4.0 88 111 A S H >< S+ 0 0 40 -4,-1.9 3,-0.6 2,-0.2 -1,-0.2 0.813 115.9 55.5 -78.3 -32.8 -1.7 11.8 6.4 89 112 A A H >< S+ 0 0 0 -4,-1.7 3,-2.6 1,-0.3 6,-0.4 0.928 102.9 54.1 -64.5 -46.9 0.9 12.3 3.7 90 113 A Q T 3< S+ 0 0 72 -4,-4.3 -1,-0.3 1,-0.3 -2,-0.2 0.638 104.0 59.3 -62.0 -13.3 -1.6 14.2 1.5 91 114 A E T < S+ 0 0 159 -3,-0.6 -1,-0.3 -5,-0.3 -2,-0.2 0.530 99.8 71.4 -91.1 -9.6 -2.1 16.3 4.6 92 115 A N S < S- 0 0 60 -3,-2.6 -3,-0.1 -4,-0.2 6,-0.0 -0.066 83.1-124.5 -90.5-165.5 1.6 17.3 4.6 93 116 A I S S+ 0 0 156 3,-0.1 -1,-0.1 -2,-0.0 -4,-0.0 0.721 109.5 41.2-110.8 -41.6 3.5 19.6 2.2 94 117 A A S S- 0 0 55 2,-0.2 -4,-0.1 -73,-0.0 -73,-0.1 0.359 116.2-111.4 -88.3 3.7 6.2 17.3 0.9 95 118 A G S S+ 0 0 0 -6,-0.4 -74,-2.5 1,-0.3 -71,-0.2 0.871 72.3 141.2 67.8 38.9 3.6 14.5 0.8 96 119 A I - 0 0 24 -7,-0.4 -1,-0.3 -8,-0.2 -2,-0.2 -0.947 50.0-124.2-117.5 135.0 5.2 12.6 3.6 97 120 A P >> - 0 0 2 0, 0.0 3,-2.6 0, 0.0 4,-1.7 -0.410 23.4-116.9 -75.1 151.0 3.3 10.8 6.4 98 121 A S H 3>>S+ 0 0 66 1,-0.3 4,-1.8 2,-0.2 5,-0.6 0.683 110.4 79.8 -58.8 -17.2 3.9 11.6 10.0 99 122 A A H 345S+ 0 0 32 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.801 106.8 28.1 -60.1 -29.2 5.1 8.0 10.2 100 123 A F H <45S+ 0 0 46 -3,-2.6 -2,-0.2 2,-0.1 -1,-0.2 0.751 117.9 59.0-100.3 -34.3 8.4 9.3 8.7 101 124 A L H <5S+ 0 0 89 -4,-1.7 -2,-0.2 3,-0.1 -3,-0.2 0.991 119.4 25.2 -57.7 -68.0 8.2 12.9 10.0 102 125 A E T <5S+ 0 0 161 -4,-1.8 -3,-0.2 2,-0.0 -2,-0.1 0.995 126.4 42.4 -59.4 -77.9 8.1 12.0 13.7 103 126 A L S