==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 24-JAN-95 1MSE . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.OGATA,S.MORIKAWA,H.NAKAMURA,A.SEKIKAWA,T.INOUE,H.KANAI, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7227.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 44 41.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 89 C M 0 0 156 0, 0.0 37,-0.0 0, 0.0 40,-0.0 0.000 360.0 360.0 360.0-132.8 -72.7 -10.9 19.8 2 90 C L + 0 0 144 35,-0.1 33,-0.0 2,-0.0 0, 0.0 0.025 360.0 72.3 58.7-174.9 -74.5 -14.3 19.6 3 91 C I + 0 0 81 1,-0.2 -1,-0.0 34,-0.1 0, 0.0 0.873 56.2 177.9 33.0 64.5 -73.0 -17.3 17.7 4 92 C K + 0 0 206 3,-0.0 -1,-0.2 33,-0.0 3,-0.1 0.599 45.4 106.8 -69.5 -11.2 -70.3 -17.7 20.4 5 93 C G S S- 0 0 36 1,-0.1 3,-0.1 2,-0.0 0, 0.0 -0.154 86.2 -76.8 -64.3 165.0 -69.0 -20.7 18.4 6 94 C P - 0 0 122 0, 0.0 2,-0.9 0, 0.0 -1,-0.1 -0.074 63.2 -77.8 -58.9 163.5 -65.8 -20.5 16.4 7 95 C W - 0 0 37 -3,-0.1 4,-0.1 4,-0.1 -3,-0.0 -0.545 59.4-144.9 -70.2 104.3 -65.7 -18.6 13.0 8 96 C T >> - 0 0 63 -2,-0.9 4,-2.5 2,-0.1 3,-1.0 -0.039 24.4-105.2 -65.0 169.3 -67.3 -21.2 10.7 9 97 C K H 3> S+ 0 0 130 1,-0.3 4,-1.6 2,-0.2 -1,-0.1 0.784 121.8 64.4 -64.4 -27.9 -66.4 -21.8 7.1 10 98 C E H 34 S+ 0 0 88 1,-0.1 -1,-0.3 2,-0.1 -2,-0.1 -0.115 112.3 33.0 -90.1 36.2 -69.7 -20.0 6.4 11 99 C E H X> S+ 0 0 11 -3,-1.0 4,-3.2 -4,-0.1 3,-1.2 0.269 116.1 51.0-147.6 -54.0 -68.3 -16.8 7.9 12 100 C D H 3X S+ 0 0 9 -4,-2.5 4,-0.7 1,-0.3 -3,-0.2 0.913 118.3 38.6 -57.9 -48.6 -64.6 -16.9 7.1 13 101 C Q H 3< S+ 0 0 75 -4,-1.6 -1,-0.3 -5,-0.2 -3,-0.1 0.109 119.8 50.6 -93.7 21.9 -65.1 -17.6 3.3 14 102 C R H X> S+ 0 0 109 -3,-1.2 3,-1.2 2,-0.1 4,-1.1 0.643 107.7 46.2-120.5 -49.6 -68.1 -15.2 3.3 15 103 C V H 3X S+ 0 0 0 -4,-3.2 4,-1.8 1,-0.2 5,-0.2 0.765 101.4 76.6 -61.4 -25.7 -66.6 -12.1 5.0 16 104 C I H 3X S+ 0 0 40 -4,-0.7 4,-0.8 -5,-0.3 -1,-0.2 0.832 99.0 38.7 -54.0 -38.9 -63.8 -12.9 2.5 17 105 C K H <> S+ 0 0 141 -3,-1.2 4,-0.9 2,-0.2 -1,-0.2 0.788 109.0 62.3 -84.4 -30.3 -65.8 -11.5 -0.4 18 106 C L H X>S+ 0 0 34 -4,-1.1 4,-2.9 1,-0.2 5,-0.6 0.813 102.7 49.8 -67.2 -31.0 -67.2 -8.6 1.7 19 107 C V H <5S+ 0 0 9 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.887 107.9 52.7 -75.5 -37.4 -63.7 -7.1 2.3 20 108 C Q H <5S+ 0 0 117 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.719 116.8 42.5 -66.0 -20.3 -62.9 -7.3 -1.4 21 109 C K H <5S+ 0 0 140 -4,-0.9 -2,-0.2 2,-0.1 -1,-0.2 0.902 135.4 10.0 -90.6 -52.7 -66.2 -5.3 -1.9 22 110 C Y T <5S- 0 0 67 -4,-2.9 -3,-0.2 -5,-0.1 -2,-0.1 0.914 102.0-121.1 -93.9 -59.1 -66.1 -2.7 0.9 23 111 C G < - 0 0 13 -5,-0.6 2,-2.5 3,-0.1 3,-0.5 -0.469 36.0 -65.1 128.1 160.2 -62.5 -2.9 2.4 24 112 C P S S+ 0 0 54 0, 0.0 -5,-0.1 0, 0.0 -4,-0.0 -0.344 122.2 62.7 -75.9 60.1 -60.9 -3.5 5.8 25 113 C K S S+ 0 0 153 -2,-2.5 -6,-0.0 -6,-0.0 18,-0.0 0.019 81.4 73.4-174.4 42.1 -62.5 -0.4 7.3 26 114 C R >> + 0 0 121 -3,-0.5 4,-2.5 13,-0.1 3,-1.8 -0.094 44.7 139.7-153.2 30.1 -66.2 -0.9 7.1 27 115 C W H 3> S+ 0 0 36 1,-0.3 4,-2.3 2,-0.2 5,-0.1 0.717 71.0 65.8 -55.3 -20.8 -66.6 -3.5 9.9 28 116 C S H 3> S+ 0 0 88 2,-0.2 4,-0.5 1,-0.2 -1,-0.3 0.874 108.9 36.3 -67.8 -38.4 -69.7 -1.5 10.7 29 117 C V H <> S+ 0 0 46 -3,-1.8 4,-0.9 2,-0.2 3,-0.2 0.865 114.0 56.9 -80.8 -40.8 -71.2 -2.7 7.4 30 118 C I H >X S+ 0 0 0 -4,-2.5 4,-2.0 1,-0.3 3,-1.6 0.950 107.8 47.6 -54.3 -52.7 -69.6 -6.1 7.5 31 119 C A H 3X S+ 0 0 15 -4,-2.3 4,-1.6 1,-0.3 -1,-0.3 0.773 100.3 68.9 -60.2 -27.5 -71.3 -6.8 10.9 32 120 C K H 3< S+ 0 0 127 -4,-0.5 -1,-0.3 -3,-0.2 -2,-0.2 0.804 108.8 35.7 -61.8 -29.6 -74.6 -5.5 9.4 33 121 C H H << S+ 0 0 74 -3,-1.6 -2,-0.2 -4,-0.9 -1,-0.2 0.865 118.9 46.6 -91.4 -43.5 -74.6 -8.7 7.1 34 122 C L H >< S- 0 0 35 -4,-2.0 2,-2.4 3,-0.2 3,-0.8 0.616 89.1-166.0 -74.5 -11.9 -73.2 -11.2 9.6 35 123 C K T 3< S+ 0 0 154 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.1 -0.366 75.9 37.6 65.2 -72.4 -75.6 -9.8 12.2 36 124 C G T 3 S+ 0 0 12 -2,-2.4 2,-1.0 -3,-0.1 -1,-0.3 0.892 95.1 86.4 -78.6 -41.9 -74.1 -11.3 15.3 37 125 C R S < S- 0 0 3 -3,-0.8 -3,-0.2 -7,-0.1 -2,-0.1 -0.467 76.3-148.5 -65.4 99.4 -70.5 -11.0 14.4 38 126 C I > - 0 0 67 -2,-1.0 4,-2.2 1,-0.1 3,-0.2 -0.217 28.7 -99.8 -65.8 161.1 -69.7 -7.5 15.6 39 127 C G H > S+ 0 0 18 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.832 122.6 59.6 -51.2 -37.4 -67.1 -5.4 13.7 40 128 C K H > S+ 0 0 151 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.971 107.4 42.6 -56.2 -59.7 -64.5 -6.3 16.4 41 129 C Q H > S+ 0 0 59 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.893 112.0 56.0 -55.4 -44.2 -64.8 -10.1 15.8 42 130 C C H X S+ 0 0 0 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.931 111.6 42.7 -54.5 -49.7 -64.8 -9.6 12.0 43 131 C R H X S+ 0 0 52 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.906 111.8 54.4 -65.4 -43.0 -61.5 -7.7 12.2 44 132 C E H < S+ 0 0 76 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.945 113.7 41.1 -57.1 -50.8 -60.0 -10.1 14.7 45 133 C R H X>S+ 0 0 72 -4,-2.8 4,-0.7 -5,-0.2 5,-0.5 0.959 120.9 45.2 -59.3 -52.0 -60.7 -13.1 12.4 46 134 C W H >X>S+ 0 0 0 -4,-2.6 2,-1.5 -5,-0.3 4,-1.4 0.980 105.0 58.3 -56.2 -70.9 -59.6 -11.1 9.3 47 135 C H H 3<5S+ 0 0 28 -4,-2.8 44,-0.3 1,-0.2 -1,-0.2 -0.507 100.2 56.2 -68.7 91.7 -56.4 -9.4 10.6 48 136 C N H 345S- 0 0 49 -2,-1.5 -1,-0.2 43,-0.1 -2,-0.1 -0.144 130.1 -46.1-175.8 -66.5 -54.5 -12.6 11.5 49 137 C H H <<5S+ 0 0 36 -4,-0.7 -2,-0.1 -3,-0.6 -3,-0.1 0.178 109.4 95.9-173.7 21.7 -54.2 -14.9 8.4 50 138 C L T << + 0 0 8 -4,-1.4 -4,-0.1 -5,-0.5 6,-0.1 0.899 56.4 105.6 -82.5 -48.4 -57.7 -15.1 6.9 51 139 C N < - 0 0 17 -5,-1.1 3,-0.3 1,-0.2 -35,-0.0 -0.026 57.7-159.3 -35.0 116.6 -57.0 -12.3 4.4 52 140 C P S S+ 0 0 44 0, 0.0 3,-0.3 0, 0.0 -1,-0.2 0.815 98.2 65.3 -68.1 -29.3 -56.6 -13.9 0.9 53 141 C E S S+ 0 0 103 1,-0.3 2,-1.0 2,-0.1 -2,-0.1 0.867 99.8 52.7 -55.6 -38.9 -54.8 -10.7 0.3 54 142 C V S S- 0 0 27 -3,-0.3 -1,-0.3 33,-0.1 3,-0.1 -0.733 98.7-141.2-100.3 80.0 -52.3 -12.0 2.8 55 143 C K - 0 0 137 -2,-1.0 -4,-0.1 -3,-0.3 -2,-0.1 -0.149 30.6 -97.4 -45.4 125.9 -51.6 -15.4 1.3 56 144 C K + 0 0 146 -6,-0.1 2,-0.3 -7,-0.1 -1,-0.2 -0.277 65.0 149.5 -52.3 118.8 -51.3 -18.0 4.1 57 145 C T - 0 0 73 -3,-0.1 2,-0.1 -2,-0.1 -3,-0.0 -0.960 39.5-125.9-156.0 136.9 -47.5 -18.4 4.8 58 146 C S - 0 0 99 -2,-0.3 2,-0.0 1,-0.1 5,-0.0 -0.439 35.2 -95.5 -84.5 159.0 -45.6 -19.2 8.0 59 147 C W + 0 0 43 -2,-0.1 2,-0.2 4,-0.1 -1,-0.1 -0.325 49.0 168.5 -70.0 154.0 -42.8 -17.2 9.4 60 148 C T >> - 0 0 82 -2,-0.0 4,-3.2 1,-0.0 3,-1.9 -0.787 54.2 -65.1-150.2-170.4 -39.2 -18.2 8.5 61 149 C E H 3> S+ 0 0 121 1,-0.3 4,-1.2 -2,-0.2 -2,-0.0 0.894 132.0 52.4 -53.4 -43.9 -35.6 -16.9 8.8 62 150 C E H 34 S+ 0 0 119 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.525 119.4 35.3 -73.4 -5.2 -36.4 -14.0 6.4 63 151 C E H X> S+ 0 0 39 -3,-1.9 3,-1.2 2,-0.1 4,-1.1 0.625 106.1 65.1-116.5 -27.9 -39.4 -13.0 8.5 64 152 C D H 3X S+ 0 0 51 -4,-3.2 4,-2.6 1,-0.3 -2,-0.2 0.827 95.7 62.7 -62.5 -31.9 -38.1 -13.8 12.0 65 153 C R H 3X S+ 0 0 86 -4,-1.2 4,-1.2 -5,-0.3 -1,-0.3 0.725 97.0 59.6 -65.4 -23.1 -35.6 -11.0 11.3 66 154 C I H <> S+ 0 0 46 -3,-1.2 4,-3.0 2,-0.2 5,-0.2 0.970 112.7 33.0 -72.3 -54.9 -38.5 -8.6 11.1 67 155 C I H X S+ 0 0 0 -4,-1.1 4,-3.0 1,-0.2 5,-0.3 0.894 113.2 62.4 -69.0 -39.5 -39.9 -9.1 14.6 68 156 C Y H < S+ 0 0 104 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.865 118.6 27.8 -52.9 -39.2 -36.4 -9.7 16.1 69 157 C Q H >X S+ 0 0 122 -4,-1.2 3,-1.1 -3,-0.2 4,-0.7 0.901 121.2 50.9 -89.2 -49.8 -35.5 -6.1 15.1 70 158 C A H >X>S+ 0 0 14 -4,-3.0 4,-3.3 1,-0.3 3,-1.3 0.899 110.1 51.4 -55.9 -43.9 -38.8 -4.4 15.2 71 159 C H H 3<5S+ 0 0 59 -4,-3.0 -1,-0.3 1,-0.3 -2,-0.2 0.697 102.2 63.1 -67.0 -19.0 -39.5 -5.8 18.7 72 160 C K H <45S+ 0 0 130 -3,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.686 119.4 22.4 -79.1 -18.9 -36.0 -4.4 19.7 73 161 C R H <<5S+ 0 0 167 -3,-1.3 -2,-0.2 -4,-0.7 -3,-0.1 0.724 140.3 24.2-113.2 -42.1 -37.2 -0.8 19.0 74 162 C L T <5S+ 0 0 22 -4,-3.3 2,-1.2 -5,-0.2 -3,-0.2 0.887 75.9 177.5 -93.0 -51.1 -41.0 -1.0 19.3 75 163 C G S > + 0 0 146 1,-0.2 3,-1.9 -7,-0.1 4,-1.6 -0.488 35.8 159.4 -99.9 59.6 -46.0 -1.3 19.6 78 166 C W H 3> + 0 0 38 -2,-0.7 4,-2.9 1,-0.3 12,-0.4 0.679 62.4 76.2 -55.7 -19.4 -47.3 -3.8 17.1 79 167 C A H 3> S+ 0 0 56 -3,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.892 104.2 33.4 -59.8 -41.6 -49.2 -0.8 15.6 80 168 C E H <> S+ 0 0 70 -3,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.893 116.5 54.9 -82.2 -43.9 -46.0 0.5 14.0 81 169 C I H X S+ 0 0 0 -4,-1.6 4,-1.1 1,-0.2 -2,-0.2 0.929 107.7 52.2 -52.7 -48.7 -44.5 -2.9 13.4 82 170 C A H >< S+ 0 0 6 -4,-2.9 3,-1.1 1,-0.2 5,-0.2 0.932 110.5 45.4 -53.2 -53.9 -47.6 -3.9 11.4 83 171 C K H 3< S+ 0 0 161 -4,-1.2 -1,-0.2 1,-0.3 -2,-0.2 0.829 111.4 54.1 -62.1 -32.5 -47.5 -0.7 9.2 84 172 C L H 3< S+ 0 0 122 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.686 106.8 57.5 -74.0 -18.9 -43.7 -1.4 8.7 85 173 C L S << S- 0 0 25 -4,-1.1 2,-0.8 -3,-1.1 -1,-0.2 -0.827 81.7-150.1-116.7 90.4 -44.6 -4.9 7.5 86 174 C P S S+ 0 0 124 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 -0.456 83.5 18.8 -63.4 103.4 -47.0 -4.8 4.5 87 175 C G S S+ 0 0 27 -2,-0.8 2,-1.3 -5,-0.2 5,-0.1 -0.674 105.2 73.9 139.4 -79.4 -49.0 -8.0 4.9 88 176 C R S S- 0 0 14 -2,-0.2 2,-0.4 4,-0.1 -3,-0.2 -0.555 71.3-172.0 -70.8 95.9 -48.7 -9.3 8.5 89 177 C T > - 0 0 53 -2,-1.3 3,-2.7 3,-0.1 -10,-0.1 -0.774 45.0 -53.8 -99.1 137.3 -50.9 -6.8 10.2 90 178 C D T >> S+ 0 0 33 -12,-0.4 4,-2.7 -2,-0.4 3,-0.6 -0.095 136.6 33.1 40.5-103.0 -51.3 -6.5 14.0 91 179 C N H 3>>S+ 0 0 11 -44,-0.3 4,-2.5 1,-0.2 5,-0.5 0.790 110.7 69.5 -49.5 -34.5 -52.3 -10.1 15.1 92 180 C A H <>5S+ 0 0 6 -3,-2.7 4,-1.0 1,-0.2 -1,-0.2 0.952 116.2 19.4 -51.1 -60.2 -50.1 -11.5 12.3 93 181 C I H <>5S+ 0 0 0 -3,-0.6 4,-2.4 2,-0.2 -1,-0.2 0.816 128.1 52.8 -82.6 -33.0 -46.8 -10.5 13.9 94 182 C K H X5S+ 0 0 55 -4,-2.7 4,-1.9 2,-0.2 -3,-0.2 0.974 110.7 45.2 -64.8 -56.4 -48.1 -10.0 17.4 95 183 C N H <5S+ 0 0 71 -4,-2.5 5,-0.2 -5,-0.2 -1,-0.2 0.849 114.2 52.6 -56.1 -37.3 -49.7 -13.5 17.6 96 184 C H H >XXS+ 0 0 21 -4,-1.0 4,-3.0 -5,-0.5 3,-1.0 0.956 108.6 48.0 -64.5 -52.8 -46.5 -14.9 16.2 97 185 C W H 3X5S+ 0 0 26 -4,-2.4 4,-1.7 1,-0.3 2,-1.7 0.964 111.8 46.1 -53.4 -64.7 -44.2 -13.3 18.6 98 186 C N H 3<5S+ 0 0 48 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.1 -0.164 123.6 35.5 -78.6 44.6 -46.0 -14.2 21.9 99 187 C S H <45S+ 0 0 77 -2,-1.7 -1,-0.2 -3,-1.0 -2,-0.2 0.270 131.2 21.9-156.0 -46.7 -46.5 -17.9 20.7 100 188 C T H <5S+ 0 0 57 -4,-3.0 3,-0.2 -5,-0.2 -3,-0.2 0.774 138.3 28.7 -99.7 -38.5 -43.4 -18.9 18.7 101 189 C M S ><