==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 24-JAN-95 1MSF . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.OGATA,S.MORIKAWA,H.NAKAMURA,A.SEKIKAWA,T.INOUE,H.KANAI, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7523.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 63.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 89 C M 0 0 214 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.7 -78.9 -22.4 19.7 2 90 C L + 0 0 166 2,-0.0 2,-0.3 3,-0.0 3,-0.0 -0.492 360.0 149.0 -68.7 130.0 -75.5 -22.1 17.9 3 91 C I - 0 0 123 -2,-0.2 2,-0.1 33,-0.0 34,-0.0 -0.936 54.3 -14.0-163.5 140.1 -73.8 -18.8 18.6 4 92 C K S S+ 0 0 142 -2,-0.3 33,-0.1 1,-0.1 32,-0.0 -0.436 79.5 118.8 64.4-133.6 -70.2 -17.6 18.9 5 93 C G S S- 0 0 44 -2,-0.1 -1,-0.1 2,-0.1 -3,-0.0 -0.216 75.4 -5.8 69.7-166.3 -67.8 -20.6 19.1 6 94 C P S S- 0 0 116 0, 0.0 2,-0.8 0, 0.0 -2,-0.0 -0.136 75.9-115.9 -58.6 156.7 -65.1 -21.2 16.4 7 95 C W + 0 0 26 4,-0.0 2,-0.3 38,-0.0 3,-0.1 -0.835 65.0 97.8-105.6 99.9 -65.1 -19.0 13.4 8 96 C T + 0 0 75 -2,-0.8 37,-0.0 1,-0.4 0, 0.0 -0.912 52.5 40.8-175.9 152.2 -65.8 -20.7 10.1 9 97 C K S S+ 0 0 177 -2,-0.3 -1,-0.4 1,-0.1 0, 0.0 0.835 124.1 13.1 67.9 112.4 -68.5 -21.5 7.5 10 98 C E S S+ 0 0 93 1,-0.1 -1,-0.1 -3,-0.1 -2,-0.0 0.719 127.2 69.0 62.2 21.9 -70.9 -18.6 6.8 11 99 C E S > S+ 0 0 21 3,-0.1 4,-1.8 -4,-0.1 3,-0.5 0.541 106.5 25.3-127.5 -62.0 -68.2 -16.6 8.7 12 100 C D H > S+ 0 0 21 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.904 116.5 64.1 -70.8 -42.1 -65.1 -16.6 6.4 13 101 C Q H 4 S+ 0 0 101 1,-0.2 4,-0.3 2,-0.2 -1,-0.2 0.634 110.2 41.2 -58.1 -16.7 -67.3 -17.0 3.3 14 102 C R H >> S+ 0 0 61 -3,-0.5 4,-2.7 2,-0.1 3,-0.8 0.890 118.5 38.7 -95.8 -64.2 -68.7 -13.7 4.2 15 103 C V H 3X S+ 0 0 0 -4,-1.8 4,-2.6 1,-0.2 5,-0.3 0.840 110.2 65.0 -57.0 -35.7 -65.8 -11.5 5.3 16 104 C I H 3X S+ 0 0 49 -4,-3.4 4,-0.9 1,-0.2 -1,-0.2 0.879 114.1 29.3 -56.7 -42.5 -63.7 -13.1 2.6 17 105 C K H <> S+ 0 0 156 -3,-0.8 4,-0.9 -5,-0.3 -2,-0.2 0.840 118.8 55.5 -87.2 -37.7 -65.8 -11.6 -0.2 18 106 C L H X>S+ 0 0 22 -4,-2.7 4,-2.8 2,-0.2 5,-0.7 0.813 108.2 49.0 -67.0 -31.6 -66.9 -8.5 1.7 19 107 C V H <5S+ 0 0 2 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.933 108.9 50.9 -74.6 -45.9 -63.3 -7.4 2.4 20 108 C Q H <5S+ 0 0 121 -4,-0.9 -1,-0.2 -5,-0.3 -2,-0.2 0.701 118.8 41.4 -62.5 -18.8 -62.1 -7.8 -1.2 21 109 C K H <5S+ 0 0 128 -4,-0.9 -2,-0.2 2,-0.0 -1,-0.2 0.879 136.7 8.4 -94.4 -49.7 -65.2 -5.7 -2.2 22 110 C Y T <5S- 0 0 88 -4,-2.8 -3,-0.2 -5,-0.1 -2,-0.1 0.896 100.5-120.2 -96.2 -62.9 -65.1 -2.9 0.5 23 111 C G < - 0 0 9 -5,-0.7 2,-2.3 3,-0.0 3,-0.1 -0.447 35.5 -68.0 129.4 157.0 -61.9 -3.3 2.5 24 112 C P S S+ 0 0 37 0, 0.0 -5,-0.1 0, 0.0 -4,-0.0 -0.445 111.4 78.5 -77.4 71.0 -61.0 -4.0 6.2 25 113 C K S S+ 0 0 166 -2,-2.3 -6,-0.0 -6,-0.0 0, 0.0 -0.055 77.6 62.7-169.2 46.5 -62.3 -0.6 7.4 26 114 C R >> + 0 0 101 -3,-0.1 4,-2.7 2,-0.0 3,-2.1 -0.024 48.4 147.8-167.5 31.3 -66.1 -0.9 7.6 27 115 C W H 3> S+ 0 0 43 1,-0.3 4,-2.3 2,-0.2 12,-0.4 0.748 71.9 65.8 -47.8 -27.1 -66.5 -3.6 10.3 28 116 C S H 3> S+ 0 0 76 2,-0.2 4,-0.5 1,-0.2 -1,-0.3 0.876 112.1 31.1 -65.6 -38.9 -69.7 -1.8 11.2 29 117 C V H X> S+ 0 0 53 -3,-2.1 3,-1.0 2,-0.2 4,-0.6 0.896 116.4 56.8 -84.3 -46.9 -71.2 -2.6 7.8 30 118 C I H >X S+ 0 0 0 -4,-2.7 3,-1.5 1,-0.3 4,-0.6 0.917 103.4 57.4 -47.7 -49.5 -69.5 -6.0 7.3 31 119 C A H >< S+ 0 0 5 -4,-2.3 3,-1.5 1,-0.3 -1,-0.3 0.821 91.5 70.1 -51.0 -39.9 -71.0 -7.0 10.7 32 120 C K H << S+ 0 0 143 -3,-1.0 3,-0.5 -4,-0.5 -1,-0.3 0.783 102.4 43.5 -54.9 -30.8 -74.5 -6.4 9.4 33 121 C H H << S+ 0 0 74 -3,-1.5 -1,-0.3 -4,-0.6 -2,-0.2 0.568 99.1 71.3 -92.8 -9.9 -74.4 -9.4 7.0 34 122 C L S X< S- 0 0 4 -3,-1.5 3,-2.1 -4,-0.6 2,-1.2 0.234 91.1-146.5 -89.5 14.2 -72.7 -11.8 9.6 35 123 C K T 3 S+ 0 0 132 -3,-0.5 -1,-0.2 1,-0.3 3,-0.1 -0.411 79.4 1.0 62.4 -91.6 -76.0 -11.9 11.5 36 124 C G T 3 S+ 0 0 53 -2,-1.2 2,-2.5 1,-0.1 -1,-0.3 0.680 111.9 87.5-101.1 -24.4 -74.8 -12.2 15.1 37 125 C R S < S+ 0 0 22 -3,-2.1 5,-0.3 -6,-0.1 2,-0.2 -0.457 70.8 154.1 -76.3 71.0 -71.0 -12.1 14.5 38 126 C I > - 0 0 94 -2,-2.5 3,-1.8 3,-0.1 2,-1.0 -0.492 42.3 -5.9-103.7 170.0 -71.0 -8.3 14.7 39 127 C G T 3> S+ 0 0 33 -12,-0.4 4,-0.6 1,-0.3 -8,-0.1 -0.331 134.6 13.3 57.7 -91.5 -68.6 -5.5 15.5 40 128 C K H 3> S+ 0 0 147 -2,-1.0 4,-2.7 2,-0.2 3,-0.3 0.822 112.1 75.6 -85.9 -36.5 -65.4 -7.2 16.8 41 129 C Q H <> S+ 0 0 37 -3,-1.8 4,-1.6 1,-0.3 5,-0.2 0.867 98.4 46.9 -46.9 -48.5 -66.1 -10.8 15.7 42 130 C C H > S+ 0 0 0 -5,-0.3 4,-1.9 1,-0.2 -1,-0.3 0.910 112.0 50.5 -62.1 -43.4 -65.3 -10.0 12.0 43 131 C R H < S+ 0 0 64 -4,-0.6 -2,-0.2 -3,-0.3 -1,-0.2 0.919 105.0 58.9 -60.1 -45.6 -62.1 -8.2 13.0 44 132 C E H < S+ 0 0 67 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.920 108.2 43.0 -51.1 -54.2 -61.0 -11.1 15.2 45 133 C R H < S+ 0 0 54 -4,-1.6 -1,-0.2 3,-0.1 -2,-0.2 0.925 121.5 46.3 -58.7 -45.0 -61.0 -13.7 12.3 46 134 C W S < S+ 0 0 0 -4,-1.9 3,-0.1 -5,-0.2 -3,-0.1 0.203 85.6 59.8 -80.6-158.0 -59.4 -11.1 10.0 47 135 C H S S+ 0 0 46 1,-0.2 -1,-0.1 44,-0.1 41,-0.1 0.865 94.4 68.8 30.8 75.7 -56.4 -8.8 10.6 48 136 C N S S- 0 0 40 39,-0.2 41,-1.2 43,-0.2 44,-0.4 -0.171 121.7 -48.8-166.8 -84.5 -53.8 -11.5 11.3 49 137 C H S S+ 0 0 22 39,-0.2 39,-0.1 43,-0.1 -3,-0.1 0.028 109.3 95.8-159.7 27.9 -52.8 -13.7 8.4 50 138 C L + 0 0 26 -5,-0.2 -4,-0.1 5,-0.0 6,-0.1 0.848 47.7 115.2 -90.0 -42.8 -56.2 -14.7 7.0 51 139 C N > - 0 0 13 1,-0.2 3,-2.4 36,-0.1 -35,-0.0 -0.010 56.4-155.3 -32.0 106.3 -56.4 -12.0 4.3 52 140 C P T 3 S+ 0 0 60 0, 0.0 -1,-0.2 0, 0.0 3,-0.0 0.721 90.8 79.7 -61.3 -19.0 -56.3 -14.0 1.0 53 141 C E T 3 S+ 0 0 116 1,-0.2 2,-0.4 34,-0.1 -2,-0.1 0.686 96.1 48.1 -60.0 -19.3 -54.9 -10.7 -0.3 54 142 C V S < S- 0 0 35 -3,-2.4 -1,-0.2 33,-0.1 33,-0.0 -0.962 92.9-128.4-128.7 112.4 -51.6 -12.0 1.2 55 143 C K - 0 0 174 -2,-0.4 2,-2.1 1,-0.1 3,-0.3 -0.262 33.1-103.6 -56.7 141.7 -50.5 -15.6 0.5 56 144 C K + 0 0 134 1,-0.2 -1,-0.1 -6,-0.1 -7,-0.0 -0.472 62.2 149.6 -71.6 80.2 -49.7 -17.6 3.6 57 145 C T - 0 0 92 -2,-2.1 -1,-0.2 1,-0.1 -2,-0.1 0.829 35.9-169.3 -79.4 -34.8 -45.9 -17.4 3.2 58 146 C S - 0 0 57 -3,-0.3 2,-0.2 2,-0.0 6,-0.1 0.049 31.6 -44.6 69.7 178.9 -45.5 -17.6 7.0 59 147 C W S S+ 0 0 44 1,-0.1 3,-0.0 4,-0.1 0, 0.0 -0.515 70.8 128.4 -81.2 147.9 -42.4 -17.0 9.1 60 148 C T S S- 0 0 109 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 0.169 79.5 -49.7-159.7 -67.5 -39.0 -18.6 8.0 61 149 C E S > S+ 0 0 96 3,-0.0 4,-1.9 4,-0.0 5,-0.1 0.318 128.7 52.4-150.3 -59.4 -36.0 -16.3 7.8 62 150 C E T 4 S+ 0 0 144 1,-0.2 -3,-0.1 2,-0.2 0, 0.0 0.690 128.9 28.2 -62.5 -18.8 -36.7 -13.2 5.7 63 151 C E T >> S+ 0 0 44 2,-0.1 3,-1.4 -5,-0.1 4,-1.0 0.672 112.8 63.1-110.7 -32.8 -39.6 -12.7 8.1 64 152 C D H 3> S+ 0 0 57 1,-0.3 4,-1.3 2,-0.2 -2,-0.2 0.761 98.3 61.1 -63.3 -23.6 -38.3 -14.4 11.2 65 153 C R H 3X S+ 0 0 105 -4,-1.9 4,-0.9 2,-0.2 -1,-0.3 0.708 94.6 64.7 -74.8 -20.7 -35.6 -11.7 11.1 66 154 C I H X>>S+ 0 0 43 -3,-1.4 4,-2.6 2,-0.2 3,-1.1 0.977 102.1 43.7 -68.1 -56.4 -38.4 -9.0 11.5 67 155 C I H 3X>S+ 0 0 1 -4,-1.0 4,-1.8 1,-0.3 5,-0.6 0.935 109.5 58.2 -54.0 -48.8 -39.5 -10.1 15.0 68 156 C Y H 3<5S+ 0 0 106 -4,-1.3 -1,-0.3 3,-0.2 -2,-0.2 0.776 125.4 20.4 -51.5 -30.4 -35.9 -10.5 16.1 69 157 C Q H XX5S+ 0 0 111 -3,-1.1 4,-0.7 -4,-0.9 3,-0.6 0.843 123.1 50.4-104.6 -63.0 -35.4 -6.7 15.2 70 158 C A H >X5S+ 0 0 21 -4,-2.6 4,-3.0 1,-0.3 3,-0.9 0.858 116.3 45.3 -45.1 -44.5 -38.7 -5.0 15.1 71 159 C H H 3X< S+ 0 0 55 -4,-3.0 3,-2.0 -5,-0.3 7,-0.3 0.043 78.0 121.1-130.9 24.8 -40.9 -1.7 18.9 75 163 C G G >< S+ 0 0 0 -4,-1.7 3,-0.5 1,-0.3 -4,-0.1 0.917 77.4 52.4 -57.4 -47.6 -42.2 -5.1 20.1 76 164 C N G 3 S+ 0 0 142 -5,-0.3 -1,-0.3 1,-0.3 3,-0.1 0.313 103.9 63.8 -74.5 12.8 -44.7 -3.6 22.5 77 165 C R G X> + 0 0 135 -3,-2.0 4,-1.8 1,-0.1 3,-1.5 -0.416 57.9 155.6-130.4 53.0 -45.9 -1.5 19.5 78 166 C W H <> + 0 0 37 -3,-0.5 4,-2.9 1,-0.3 5,-0.2 0.752 66.1 69.9 -51.4 -29.0 -47.2 -4.3 17.2 79 167 C A H 3> S+ 0 0 28 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.876 106.5 34.6 -61.1 -40.8 -49.5 -1.7 15.6 80 168 C E H <> S+ 0 0 70 -3,-1.5 4,-2.4 2,-0.2 -2,-0.2 0.878 116.4 54.0 -84.8 -39.4 -46.6 0.1 13.9 81 169 C I H < S+ 0 0 10 -4,-1.8 4,-0.4 -7,-0.3 3,-0.2 0.966 110.2 48.7 -53.2 -54.6 -44.5 -3.0 13.3 82 170 C A H >< S+ 0 0 7 -4,-2.9 3,-1.3 1,-0.2 -1,-0.2 0.888 109.6 52.0 -52.1 -45.0 -47.5 -4.5 11.5 83 171 C K H 3< S+ 0 0 145 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.892 112.3 45.0 -61.0 -40.2 -48.0 -1.3 9.5 84 172 C L T 3< S+ 0 0 145 -4,-2.4 -1,-0.3 -3,-0.2 -2,-0.2 0.413 110.6 62.9 -82.3 1.7 -44.3 -1.5 8.4 85 173 C L S < S- 0 0 12 -3,-1.3 -1,-0.2 -4,-0.4 3,-0.2 -0.731 81.8-152.4-128.7 80.6 -44.8 -5.2 7.7 86 174 C P S S+ 0 0 115 0, 0.0 2,-0.6 0, 0.0 -3,-0.1 -0.298 77.3 22.7 -55.9 129.9 -47.4 -5.7 5.0 87 175 C G S S+ 0 0 21 -5,-0.1 2,-1.3 -31,-0.0 -39,-0.2 -0.702 104.8 74.3 115.7 -76.5 -49.2 -9.0 5.3 88 176 C R S S- 0 0 3 -2,-0.6 -39,-0.2 -3,-0.2 -3,-0.2 -0.605 76.1-162.4 -75.3 96.7 -48.8 -9.9 9.0 89 177 C T >> - 0 0 34 -2,-1.3 2,-2.8 -41,-1.2 4,-1.1 0.088 43.6 -61.3 -69.7-174.1 -51.3 -7.5 10.5 90 178 C D T 34 S+ 0 0 50 1,-0.2 -1,-0.2 2,-0.1 -11,-0.1 -0.392 133.1 41.4 -72.5 67.6 -51.4 -6.4 14.2 91 179 C N T 3> S+ 0 0 35 -2,-2.8 4,-2.9 -43,-0.2 5,-0.4 0.101 101.9 60.0-173.9 -47.7 -52.1 -10.0 15.4 92 180 C A H <> S+ 0 0 3 -3,-0.6 4,-2.7 -44,-0.4 5,-0.2 0.970 112.9 39.1 -62.4 -56.4 -49.9 -12.4 13.4 93 181 C I H X S+ 0 0 1 -4,-1.1 4,-1.4 1,-0.2 -1,-0.2 0.762 117.1 55.7 -65.0 -24.4 -46.6 -10.9 14.6 94 182 C K H > S+ 0 0 62 -5,-0.4 4,-1.5 2,-0.2 -2,-0.2 0.947 116.1 31.0 -74.2 -52.5 -48.2 -10.4 18.0 95 183 C N H < S+ 0 0 70 -4,-2.9 5,-0.3 2,-0.2 -2,-0.2 0.839 115.0 61.9 -77.8 -33.0 -49.3 -14.0 18.7 96 184 C H H >X>S+ 0 0 13 -4,-2.7 4,-3.2 -5,-0.4 5,-0.9 0.951 106.5 45.8 -54.1 -52.3 -46.4 -15.4 16.7 97 185 C W H 3<5S+ 0 0 9 -4,-1.4 2,-2.2 1,-0.3 4,-0.3 0.969 110.0 52.0 -54.0 -62.2 -43.9 -13.8 19.1 98 186 C N T 3<5S+ 0 0 81 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.1 -0.205 124.7 26.6 -74.2 47.6 -45.7 -14.9 22.3 99 187 C S T <45S+ 0 0 93 -2,-2.2 -1,-0.2 -3,-0.8 -2,-0.2 0.142 134.6 25.0-168.0 -43.5 -45.7 -18.6 21.1 100 188 C T T <5S+ 0 0 94 -4,-3.2 -3,-0.2 -5,-0.3 -2,-0.1 0.858 133.2 29.9 -99.2 -58.8 -42.8 -19.1 18.8 101 189 C M S >