==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 20-SEP-02 1MSZ . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SMUBP-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.LIEPINSH,A.LEONCHIKS,A.SHARIPO,L.GUIGNARD,G.OTTING . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4596.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 19.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 33.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 725 A G 0 0 102 0, 0.0 2,-0.4 0, 0.0 29,-0.1 0.000 360.0 360.0 360.0-126.1 -2.3 6.0 -11.7 2 726 A V > - 0 0 42 27,-0.1 4,-0.9 28,-0.1 3,-0.5 -0.971 360.0-159.1-137.1 116.3 1.4 5.7 -10.9 3 727 A D H > S+ 0 0 108 -2,-0.4 4,-2.8 1,-0.2 5,-0.2 0.734 84.2 77.7 -73.2 -18.1 3.0 2.4 -11.9 4 728 A H H > S+ 0 0 146 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.928 96.7 46.8 -52.9 -48.6 5.9 3.0 -9.5 5 729 A F H > S+ 0 0 24 -3,-0.5 4,-3.0 2,-0.2 5,-0.3 0.930 109.1 54.4 -60.2 -47.5 3.6 1.9 -6.6 6 730 A R H X S+ 0 0 118 -4,-0.9 4,-2.9 1,-0.2 -2,-0.2 0.941 108.1 48.9 -54.3 -51.1 2.4 -1.1 -8.6 7 731 A A H X S+ 0 0 56 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.883 112.2 49.1 -57.9 -39.7 6.0 -2.3 -9.1 8 732 A M H X S+ 0 0 83 -4,-2.1 4,-2.5 2,-0.2 -1,-0.2 0.950 113.7 45.4 -62.0 -48.6 6.6 -1.8 -5.3 9 733 A I H X S+ 0 0 0 -4,-3.0 4,-2.5 2,-0.2 -2,-0.2 0.862 110.5 55.2 -62.8 -34.7 3.5 -3.7 -4.4 10 734 A V H X S+ 0 0 61 -4,-2.9 4,-2.8 -5,-0.3 5,-0.2 0.921 108.9 46.9 -66.0 -41.8 4.4 -6.4 -7.0 11 735 A E H X S+ 0 0 147 -4,-2.3 4,-3.0 1,-0.2 5,-0.2 0.957 113.8 48.8 -60.3 -49.2 7.8 -6.9 -5.3 12 736 A F H X>S+ 0 0 10 -4,-2.5 4,-1.8 2,-0.2 5,-0.6 0.830 112.8 48.4 -60.1 -36.6 6.0 -7.0 -1.9 13 737 A M H <5S+ 0 0 58 -4,-2.5 -2,-0.2 2,-0.2 -1,-0.2 0.958 114.8 43.0 -66.3 -55.3 3.5 -9.6 -3.3 14 738 A A H <5S+ 0 0 88 -4,-2.8 -2,-0.2 1,-0.2 -3,-0.2 0.909 120.7 42.9 -59.9 -41.8 6.1 -11.9 -4.8 15 739 A S H <5S- 0 0 55 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.796 88.4-161.6 -70.9 -33.4 8.2 -11.4 -1.6 16 740 A K T <5 + 0 0 128 -4,-1.8 -3,-0.2 -5,-0.2 -4,-0.1 0.852 25.9 162.4 43.5 51.7 5.1 -11.8 0.7 17 741 A K < - 0 0 146 -5,-0.6 3,-0.1 1,-0.1 45,-0.0 0.979 53.6 -93.4 -60.2 -81.7 7.0 -10.2 3.6 18 742 A M S S- 0 0 137 1,-0.3 42,-3.0 40,-0.1 2,-0.3 0.009 84.0 -15.3-162.6 -66.3 4.4 -9.2 6.2 19 743 A Q E -A 59 0A 101 40,-0.3 2,-0.3 24,-0.1 -1,-0.3 -0.883 51.0-145.8-144.5 166.4 3.3 -5.5 5.6 20 744 A L E -A 58 0A 44 38,-2.1 38,-1.9 -2,-0.3 2,-0.6 -0.976 10.4-147.2-140.6 127.4 4.6 -2.4 3.7 21 745 A E E -A 57 0A 117 -2,-0.3 36,-0.2 36,-0.2 -2,-0.0 -0.903 14.5-164.6 -95.9 113.5 4.2 1.1 5.0 22 746 A F E -A 56 0A 6 34,-2.9 34,-2.3 -2,-0.6 -2,-0.0 -0.722 32.2 -94.8 -93.8 149.6 3.8 3.6 2.1 23 747 A P > - 0 0 62 0, 0.0 3,-1.1 0, 0.0 32,-0.2 -0.203 19.4-120.1 -68.7 158.1 4.3 7.3 3.0 24 748 A P T 3 S+ 0 0 61 0, 0.0 31,-0.1 0, 0.0 7,-0.1 0.705 98.0 91.7 -61.9 -23.3 1.6 9.9 3.9 25 749 A S T 3 + 0 0 86 5,-0.0 2,-0.7 6,-0.0 5,-0.1 0.449 51.1 115.1 -56.4 -8.6 2.8 11.9 0.8 26 750 A L < - 0 0 10 -3,-1.1 -4,-0.0 1,-0.2 29,-0.0 -0.648 57.7-156.5 -67.4 113.3 0.2 10.0 -1.4 27 751 A N - 0 0 128 -2,-0.7 -1,-0.2 4,-0.1 0, 0.0 0.965 51.9 -70.0 -59.2 -71.7 -2.1 13.0 -2.4 28 752 A S S > S+ 0 0 71 3,-0.0 4,-2.9 0, 0.0 3,-0.4 0.178 128.8 49.9-146.8 -65.9 -5.3 11.2 -3.2 29 753 A H H > S+ 0 0 143 1,-0.3 4,-1.7 2,-0.2 -27,-0.1 0.749 111.5 50.9 -56.1 -34.2 -5.0 9.2 -6.4 30 754 A D H > S+ 0 0 28 2,-0.2 4,-2.5 3,-0.2 -1,-0.3 0.894 112.9 44.8 -74.6 -40.9 -1.8 7.5 -5.2 31 755 A R H > S+ 0 0 67 -3,-0.4 4,-2.7 2,-0.2 -2,-0.2 0.950 113.7 50.2 -66.9 -49.5 -3.3 6.5 -1.8 32 756 A L H X S+ 0 0 86 -4,-2.9 4,-2.8 1,-0.2 -2,-0.2 0.869 110.3 52.3 -55.8 -38.5 -6.4 5.3 -3.7 33 757 A R H X S+ 0 0 60 -4,-1.7 4,-2.7 -5,-0.3 5,-0.3 0.956 107.4 49.2 -64.9 -50.4 -4.1 3.4 -6.0 34 758 A V H X S+ 0 0 0 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.928 114.5 47.7 -53.8 -45.9 -2.3 1.6 -3.1 35 759 A H H X S+ 0 0 45 -4,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.948 112.7 48.5 -54.8 -54.5 -5.8 0.7 -1.8 36 760 A Q H X S+ 0 0 75 -4,-2.8 4,-2.4 2,-0.2 -2,-0.2 0.881 111.9 46.6 -59.0 -50.0 -7.0 -0.5 -5.2 37 761 A I H X S+ 0 0 2 -4,-2.7 4,-2.1 2,-0.2 -1,-0.2 0.937 115.5 48.6 -56.6 -47.1 -3.9 -2.7 -5.9 38 762 A A H <>S+ 0 0 0 -4,-2.3 5,-2.3 -5,-0.3 -2,-0.2 0.892 113.2 46.4 -58.7 -42.5 -4.3 -4.1 -2.4 39 763 A E H <5S+ 0 0 140 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.822 110.9 51.9 -70.7 -37.5 -8.0 -4.7 -2.8 40 764 A E H <5S+ 0 0 133 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.843 120.7 37.3 -66.2 -37.6 -7.5 -6.4 -6.3 41 765 A H T <5S- 0 0 56 -4,-2.1 -3,-0.1 -5,-0.2 2,-0.1 0.271 113.6 -83.8 -85.3-148.5 -4.9 -8.6 -4.6 42 766 A G T 5S+ 0 0 31 19,-0.1 19,-2.3 2,-0.0 2,-0.4 -0.565 80.0 127.7-122.5 62.1 -5.2 -10.1 -1.1 43 767 A L E < -B 60 0A 1 -5,-2.3 2,-0.9 17,-0.2 17,-0.2 -0.983 57.1-135.0-124.0 134.2 -3.9 -7.1 1.0 44 768 A R E -B 59 0A 131 15,-1.7 15,-2.0 -2,-0.4 2,-0.4 -0.797 28.7-164.3 -84.1 108.6 -5.5 -5.4 4.0 45 769 A H E +B 58 0A 56 -2,-0.9 2,-0.3 13,-0.2 13,-0.2 -0.823 23.3 145.0 -91.1 132.3 -5.0 -1.7 3.1 46 770 A D E -B 57 0A 77 11,-2.7 11,-3.3 -2,-0.4 2,-0.3 -0.971 47.2-103.7-157.5 164.7 -5.5 0.7 6.0 47 771 A S E +B 56 0A 43 -2,-0.3 2,-0.3 9,-0.2 9,-0.3 -0.678 40.3 179.0 -93.6 152.2 -4.1 4.0 7.4 48 772 A S E +B 55 0A 41 7,-2.5 7,-2.5 -2,-0.3 2,-0.1 -0.892 23.6 90.0-146.0 166.6 -1.8 4.0 10.4 49 773 A G - 0 0 45 -2,-0.3 5,-0.2 5,-0.3 6,-0.1 -0.105 53.7-123.0 114.5 153.0 0.3 6.4 12.6 50 774 A E S S+ 0 0 186 3,-0.2 4,-0.1 -2,-0.1 -1,-0.0 0.952 81.4 1.7 -91.6 -66.4 -0.4 8.3 15.8 51 775 A G S S- 0 0 37 2,-0.1 3,-0.2 3,-0.0 2,-0.1 0.248 120.2 -32.6-101.6-140.7 0.2 12.1 15.2 52 776 A K S S+ 0 0 212 1,-0.3 -3,-0.0 2,-0.0 -1,-0.0 0.157 120.2 81.2 -73.0 23.5 1.3 14.1 12.2 53 777 A R + 0 0 197 -2,-0.1 -1,-0.3 2,-0.0 -3,-0.2 -0.340 64.3 156.3-120.8 44.9 3.4 11.0 11.0 54 778 A R + 0 0 116 -3,-0.2 2,-0.3 -5,-0.2 -5,-0.3 -0.238 14.5 175.1 -61.3 159.9 0.4 9.2 9.5 55 779 A F E - B 0 48A 50 -7,-2.5 -7,-2.5 -32,-0.2 2,-0.4 -0.925 31.8-106.7-155.8 175.2 1.1 6.6 6.8 56 780 A I E -AB 22 47A 2 -34,-2.3 -34,-2.9 -2,-0.3 2,-0.4 -0.950 32.9-164.0-111.5 132.7 -0.7 4.0 4.6 57 781 A T E -AB 21 46A 9 -11,-3.3 -11,-2.7 -2,-0.4 2,-0.4 -0.916 9.9-169.6-121.0 144.2 -0.2 0.4 5.4 58 782 A V E -AB 20 45A 0 -38,-1.9 -38,-2.1 -2,-0.4 2,-0.4 -0.997 11.9-156.4-133.9 132.9 -0.9 -2.7 3.3 59 783 A S E -AB 19 44A 42 -15,-2.0 -15,-1.7 -2,-0.4 2,-0.6 -0.922 14.9-126.3-114.9 136.4 -0.7 -6.1 4.9 60 784 A K E - B 0 43A 26 -42,-3.0 2,-0.8 -2,-0.4 -17,-0.2 -0.744 6.5-152.2 -84.1 113.7 -0.1 -9.4 3.0 61 785 A R 0 0 148 -19,-2.3 -19,-0.1 -2,-0.6 -45,-0.0 -0.829 360.0 360.0 -79.6 113.5 -2.6 -12.1 3.6 62 786 A A 0 0 116 -2,-0.8 -1,-0.2 -45,-0.0 -20,-0.0 0.911 360.0 360.0 -52.4 360.0 -0.0 -14.9 2.9