==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 03-MAY-10 3MUT . COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.A.STROBEL,K.D.SMITH . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5996.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 61.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 P R 0 0 228 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -19.1 -17.3 27.7 -46.4 2 8 P P + 0 0 78 0, 0.0 2,-0.3 0, 0.0 4,-0.1 -0.210 360.0 177.7 -66.7 155.9 -13.7 28.5 -45.2 3 9 P N - 0 0 11 53,-0.2 79,-0.1 2,-0.1 56,-0.1 -0.952 44.8-113.4-151.1 162.1 -12.7 28.3 -41.5 4 10 P H S S+ 0 0 45 -2,-0.3 49,-1.1 55,-0.1 2,-0.3 0.852 101.7 61.5 -60.5 -38.8 -9.9 28.6 -38.9 5 11 P T E -A 52 0A 2 47,-0.2 76,-2.7 76,-0.1 2,-0.4 -0.722 67.9-157.4-102.8 140.8 -10.2 24.9 -38.3 6 12 P I E -AB 51 80A 0 45,-1.2 45,-2.0 -2,-0.3 2,-0.6 -0.960 11.0-142.5-117.5 137.6 -9.7 21.9 -40.6 7 13 P Y E -AB 50 79A 49 72,-3.9 72,-0.7 -2,-0.4 2,-0.4 -0.863 17.6-175.6-103.2 115.1 -11.1 18.4 -40.1 8 14 P I E +AB 49 78A 0 41,-2.2 41,-2.3 -2,-0.6 2,-0.2 -0.905 10.4 164.0-109.1 140.1 -9.0 15.4 -41.0 9 15 P N E + B 0 77A 42 68,-0.8 68,-0.8 -2,-0.4 39,-0.2 -0.595 44.9 65.7-133.1-166.7 -10.3 11.9 -40.9 10 16 P N S S+ 0 0 68 -2,-0.2 2,-0.2 1,-0.2 38,-0.2 0.830 71.3 145.2 51.0 37.8 -9.4 8.4 -42.1 11 17 P L - 0 0 4 36,-2.5 2,-0.4 -3,-0.1 -1,-0.2 -0.568 61.6 -84.7 -95.4 165.7 -6.3 8.4 -40.0 12 18 P N > - 0 0 45 59,-0.4 3,-0.8 -2,-0.2 35,-0.1 -0.620 30.8-158.6 -76.5 124.2 -4.8 5.4 -38.3 13 19 P E T 3 S+ 0 0 92 -2,-0.4 -1,-0.1 1,-0.2 34,-0.1 0.666 83.7 75.8 -76.7 -18.0 -6.5 4.8 -35.0 14 20 P K T 3 S+ 0 0 176 2,-0.1 -1,-0.2 33,-0.0 2,-0.2 0.769 73.8 98.2 -62.8 -29.8 -3.5 2.7 -33.7 15 21 P I S < S- 0 0 16 -3,-0.8 32,-0.1 1,-0.1 -4,-0.0 -0.415 84.7-108.2 -68.1 131.6 -1.5 5.8 -33.2 16 22 P K > - 0 0 140 -2,-0.2 4,-3.5 1,-0.1 5,-0.3 -0.248 23.2-116.2 -60.6 145.4 -1.4 7.1 -29.6 17 23 P K H > S+ 0 0 103 1,-0.2 4,-1.4 2,-0.2 -1,-0.1 0.909 115.6 37.9 -43.4 -56.4 -3.3 10.3 -28.7 18 24 P D H > S+ 0 0 95 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.790 116.3 51.3 -75.0 -31.6 -0.2 12.2 -27.8 19 25 P E H > S+ 0 0 104 2,-0.2 4,-2.3 1,-0.2 -2,-0.2 0.958 108.7 51.9 -65.3 -51.1 2.0 10.7 -30.6 20 26 P L H X S+ 0 0 6 -4,-3.5 4,-1.7 2,-0.2 -2,-0.2 0.820 108.2 54.6 -53.8 -36.2 -0.7 11.6 -33.2 21 27 P K H >X S+ 0 0 58 -4,-1.4 4,-1.5 -5,-0.3 3,-0.7 0.995 110.5 41.0 -60.4 -65.2 -0.6 15.2 -31.8 22 28 P K H 3X S+ 0 0 156 -4,-1.8 4,-1.2 1,-0.3 -2,-0.2 0.764 109.8 63.3 -58.2 -28.1 3.1 15.8 -32.2 23 29 P S H 3X S+ 0 0 19 -4,-2.3 4,-0.8 1,-0.2 -1,-0.3 0.958 108.1 39.5 -56.5 -52.9 3.0 14.0 -35.5 24 30 P L H X S+ 0 0 0 -4,-1.7 3,-1.3 -3,-0.2 4,-0.8 0.549 98.8 75.0-112.9 -11.3 1.2 21.4 -40.4 29 35 P S T 3< S+ 0 0 58 -4,-1.8 -3,-0.1 1,-0.3 -1,-0.1 0.416 78.1 85.8 -73.2 2.6 3.2 24.1 -38.8 30 36 P R T 34 S+ 0 0 169 1,-0.1 -1,-0.3 -5,-0.1 -2,-0.1 0.474 100.5 29.4 -76.4 -4.4 4.6 24.2 -42.3 31 37 P F T <4 S- 0 0 28 -3,-1.3 2,-0.3 1,-0.3 -2,-0.2 0.597 128.6 -10.8-129.2 -29.1 1.7 26.6 -43.1 32 38 P G S < S- 0 0 9 -4,-0.8 2,-1.0 27,-0.1 -1,-0.3 -0.922 74.1 -80.9-158.7-177.8 0.9 28.5 -39.9 33 39 P Q - 0 0 114 -2,-0.3 21,-0.5 -3,-0.1 -4,-0.1 -0.806 52.7-141.2 -99.0 90.7 1.3 28.9 -36.2 34 40 P I E -C 53 0A 20 -2,-1.0 19,-0.2 -9,-0.2 3,-0.1 -0.249 12.7-160.9 -58.4 130.5 -1.1 26.3 -34.9 35 41 P L E - 0 0 90 17,-2.6 2,-0.3 1,-0.3 18,-0.1 0.960 68.9 -27.0 -74.4 -54.2 -3.0 27.4 -31.8 36 42 P D E -C 52 0A 61 16,-0.8 16,-2.0 2,-0.0 2,-0.5 -0.970 49.1-145.8-163.2 147.1 -4.0 23.9 -30.6 37 43 P I - 0 0 7 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.757 20.0-157.8-126.6 85.5 -4.6 20.5 -32.2 38 44 P L + 0 0 93 -2,-0.5 12,-1.9 12,-0.4 2,-0.3 -0.450 23.1 158.6 -69.2 124.7 -7.4 18.6 -30.3 39 45 P V B +D 49 0A 14 -2,-0.3 2,-0.3 10,-0.2 10,-0.1 -0.995 10.6 167.3-141.9 142.9 -7.4 14.8 -30.8 40 46 P S - 0 0 47 5,-0.6 8,-0.4 8,-0.5 -24,-0.0 -0.974 35.1-137.0-146.9 159.0 -8.9 11.9 -28.9 41 47 P R + 0 0 106 -2,-0.3 5,-0.3 5,-0.2 2,-0.2 0.066 56.3 140.4 -98.8 22.3 -9.4 8.2 -29.7 42 48 P S S >> S- 0 0 61 3,-0.1 4,-1.3 1,-0.1 3,-0.9 -0.461 70.6-101.0 -68.4 138.3 -12.9 8.2 -28.2 43 49 P L T 34 S+ 0 0 145 1,-0.3 -1,-0.1 2,-0.2 -2,-0.0 0.585 121.2 38.1 -33.2 -32.2 -15.4 6.1 -30.1 44 50 P K T 34 S+ 0 0 175 1,-0.1 -1,-0.3 3,-0.0 -3,-0.0 0.878 125.7 35.7 -89.4 -45.1 -17.0 9.1 -31.8 45 51 P M T X4 S+ 0 0 64 -3,-0.9 3,-0.8 2,-0.0 -5,-0.6 0.241 87.4 119.4-100.9 12.1 -13.8 11.2 -32.4 46 52 P R T 3< S+ 0 0 117 -4,-1.3 -5,-0.2 -5,-0.3 -33,-0.1 -0.339 70.9 25.7 -75.2 159.2 -11.2 8.5 -33.2 47 53 P G T 3 S+ 0 0 7 1,-0.2 -36,-2.5 -32,-0.1 2,-0.3 0.539 113.1 83.1 67.6 8.3 -9.3 8.3 -36.5 48 54 P Q < - 0 0 28 -3,-0.8 -8,-0.5 -8,-0.4 2,-0.3 -0.963 54.3-170.8-144.1 153.1 -9.8 12.1 -36.8 49 55 P A E -AD 8 39A 1 -41,-2.3 -41,-2.2 -2,-0.3 2,-0.4 -0.996 16.1-137.0-151.8 145.0 -8.3 15.4 -35.7 50 56 P F E -A 7 0A 65 -12,-1.9 2,-0.7 -2,-0.3 -12,-0.4 -0.861 12.4-155.8-105.1 130.7 -9.0 19.1 -35.7 51 57 P V E -A 6 0A 0 -45,-2.0 -45,-1.2 -2,-0.4 2,-0.6 -0.885 6.7-159.7-112.7 107.2 -6.3 21.7 -36.5 52 58 P I E -AC 5 36A 2 -16,-2.0 -17,-2.6 -2,-0.7 -16,-0.8 -0.736 12.3-163.9 -90.2 118.1 -6.9 25.2 -35.1 53 59 P F E - C 0 34A 0 -49,-1.1 -19,-0.2 -2,-0.6 3,-0.1 -0.661 27.6-139.2-101.7 155.5 -5.0 28.0 -36.8 54 60 P K S S+ 0 0 121 -21,-0.5 2,-0.4 -2,-0.2 -1,-0.1 0.820 96.7 41.1 -74.7 -35.0 -4.2 31.6 -35.8 55 61 P E > - 0 0 89 1,-0.1 4,-0.9 -51,-0.1 -1,-0.1 -0.924 66.5-151.8-116.8 140.2 -4.9 32.7 -39.4 56 62 P V H > S+ 0 0 49 -2,-0.4 4,-2.9 2,-0.2 5,-0.2 0.852 101.6 59.7 -73.4 -36.9 -7.7 31.5 -41.7 57 63 P S H > S+ 0 0 89 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.886 104.4 50.0 -56.2 -40.1 -5.4 32.3 -44.7 58 64 P S H > S+ 0 0 9 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.807 110.3 49.9 -69.6 -31.2 -2.9 29.8 -43.2 59 65 P A H X S+ 0 0 0 -4,-0.9 4,-1.9 2,-0.2 -2,-0.2 0.900 111.6 47.2 -71.8 -44.5 -5.7 27.2 -42.8 60 66 P T H X S+ 0 0 27 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.933 110.1 55.5 -57.4 -46.5 -6.9 27.7 -46.4 61 67 P N H < S+ 0 0 93 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.853 110.4 44.3 -53.5 -40.8 -3.2 27.5 -47.4 62 68 P A H >X S+ 0 0 0 -4,-1.4 4,-0.9 1,-0.1 3,-0.8 0.805 111.2 55.0 -75.5 -31.8 -3.0 24.0 -45.7 63 69 P L H 3< S+ 0 0 24 -4,-1.9 4,-0.4 1,-0.2 3,-0.4 0.957 100.4 54.3 -69.7 -54.0 -6.2 22.8 -47.2 64 70 P R T 3< S+ 0 0 197 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.1 0.234 110.9 51.5 -70.9 17.3 -5.6 23.3 -50.9 65 71 P S T <4 S+ 0 0 69 -3,-0.8 -1,-0.2 -5,-0.1 -2,-0.2 0.786 103.4 35.6-115.2 -43.6 -2.4 21.2 -50.6 66 72 P M >< + 0 0 25 -4,-0.9 3,-1.5 -3,-0.4 10,-0.2 0.086 62.5 145.7-118.8 21.6 -2.5 17.8 -49.0 67 73 P Q T 3 S+ 0 0 104 -4,-0.4 10,-0.2 1,-0.2 12,-0.0 -0.416 77.9 15.1 -64.9 131.4 -5.8 16.0 -49.8 68 74 P G T 3 S+ 0 0 30 8,-2.9 -1,-0.2 1,-0.2 9,-0.2 0.608 89.5 165.0 81.4 15.7 -5.4 12.2 -50.2 69 75 P F E < -E 76 0B 99 -3,-1.5 7,-1.8 7,-0.5 2,-0.3 -0.486 39.9-125.1 -73.7 123.7 -2.0 12.4 -48.6 70 76 P P E +E 75 0B 99 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.556 42.5 162.9 -66.6 124.5 -0.6 9.0 -47.4 71 77 P F - 0 0 36 3,-2.8 -59,-0.4 -2,-0.3 -2,-0.0 -0.863 66.5 -8.1-155.0 112.8 0.2 9.4 -43.7 72 78 P Y S S- 0 0 88 -2,-0.3 -60,-0.1 1,-0.2 -1,-0.1 0.978 131.5 -52.8 54.0 61.4 0.8 6.5 -41.3 73 79 P D S S+ 0 0 167 1,-0.1 -1,-0.2 -3,-0.1 -62,-0.0 0.770 123.6 97.3 50.7 33.1 -0.3 4.0 -44.0 74 80 P K S S- 0 0 58 -5,-0.1 -3,-2.8 -62,-0.1 2,-0.2 -0.987 77.6-111.0-152.0 137.2 -3.5 6.0 -44.5 75 81 P P E -E 70 0B 46 0, 0.0 2,-0.3 0, 0.0 -6,-0.1 -0.479 34.3-134.1 -64.0 133.6 -4.9 8.6 -46.9 76 82 P M E -E 69 0B 6 -7,-1.8 -8,-2.9 -10,-0.2 -7,-0.5 -0.731 15.0-159.1 -91.4 142.2 -5.5 12.0 -45.2 77 83 P R E -B 9 0A 96 -68,-0.8 -68,-0.8 -2,-0.3 2,-0.3 -0.889 6.7-167.8-130.9 101.2 -8.7 13.9 -45.8 78 84 P I E +B 8 0A 6 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.665 18.4 149.1 -88.3 138.7 -8.9 17.6 -45.3 79 85 P Q E -B 7 0A 108 -72,-0.7 -72,-3.9 -2,-0.3 -2,-0.1 -0.895 47.4 -95.7-159.8 147.4 -12.1 19.7 -45.1 80 86 P Y E -B 6 0A 24 -2,-0.3 -74,-0.3 -74,-0.3 2,-0.2 -0.191 38.7-114.2 -58.3 148.2 -13.0 22.9 -43.2 81 87 P A - 0 0 10 -76,-2.7 -76,-0.1 1,-0.1 3,-0.1 -0.531 14.6-144.2 -76.4 152.8 -14.8 22.7 -39.9 82 88 P K S S+ 0 0 196 1,-0.3 2,-0.4 -2,-0.2 -1,-0.1 0.893 85.7 34.4 -86.0 -45.2 -18.4 24.1 -39.9 83 89 P T S S- 0 0 123 1,-0.1 -1,-0.3 -80,-0.0 -80,-0.0 -0.948 87.2-125.9-114.3 132.7 -18.4 25.5 -36.3 84 90 P D - 0 0 53 -2,-0.4 2,-0.1 1,-0.1 -2,-0.1 0.001 34.3 -83.0 -67.8 174.4 -15.2 27.0 -34.8 85 91 P S >> - 0 0 27 1,-0.1 4,-2.8 0, 0.0 3,-1.8 -0.476 37.9-111.0 -77.8 152.4 -13.5 26.1 -31.5 86 92 P D T 34 S+ 0 0 144 1,-0.3 -1,-0.1 2,-0.2 -2,-0.1 0.708 120.9 60.5 -55.5 -22.5 -14.7 27.6 -28.2 87 93 P I T 34 S+ 0 0 106 1,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.808 116.0 31.7 -72.1 -31.5 -11.4 29.5 -28.2 88 94 P I T <4 S+ 0 0 42 -3,-1.8 2,-2.2 1,-0.1 -2,-0.2 0.701 97.3 88.0 -98.5 -26.2 -12.4 31.2 -31.5 89 95 P A < 0 0 60 -4,-2.8 -1,-0.1 -6,-0.0 -3,-0.0 -0.439 360.0 360.0 -78.4 68.7 -16.2 31.3 -31.0 90 96 P K 0 0 215 -2,-2.2 0, 0.0 -3,-0.1 0, 0.0 -0.855 360.0 360.0-168.2 360.0 -16.3 34.7 -29.2