==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 03-MAY-10 3MUV . COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.A.STROBEL,K.D.SMITH . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5932.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 67.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 22.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 P R 0 0 253 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -48.9 16.3 4.0 45.6 2 8 P P + 0 0 78 0, 0.0 2,-0.3 0, 0.0 54,-0.1 -0.291 360.0 168.7 -66.7 145.7 12.9 4.9 44.0 3 9 P N - 0 0 9 53,-0.2 78,-0.2 2,-0.2 50,-0.1 -0.973 48.5-103.6-151.2 156.9 12.5 4.9 40.2 4 10 P H S S+ 0 0 46 -2,-0.3 49,-2.0 50,-0.1 2,-0.4 0.790 103.0 66.8 -50.8 -33.9 9.7 5.1 37.6 5 11 P T E -A 52 0A 0 47,-0.2 76,-2.6 76,-0.2 2,-0.4 -0.765 69.8-154.4-100.1 136.1 10.0 1.4 36.9 6 12 P I E -AB 51 80A 0 45,-2.1 45,-1.9 -2,-0.4 2,-0.4 -0.902 10.7-137.8-109.2 140.1 9.2 -1.4 39.4 7 13 P Y E -AB 50 79A 54 72,-3.7 72,-2.5 -2,-0.4 2,-0.4 -0.808 20.2-171.3 -95.8 131.5 10.7 -4.9 39.3 8 14 P I E +AB 49 78A 0 41,-2.2 41,-2.0 -2,-0.4 2,-0.2 -0.949 12.7 158.7-131.2 111.6 8.3 -7.8 39.9 9 15 P N E +AB 48 77A 40 68,-1.9 68,-2.0 -2,-0.4 39,-0.2 -0.655 48.7 66.7-120.5-175.7 9.3 -11.4 40.5 10 16 P N S S+ 0 0 65 37,-0.7 38,-0.2 1,-0.3 2,-0.1 0.670 74.1 150.8 71.2 20.0 7.8 -14.6 42.0 11 17 P L - 0 0 1 36,-1.9 2,-0.3 -3,-0.2 -1,-0.3 -0.484 58.8 -94.2 -76.2 151.8 5.3 -14.3 39.2 12 18 P N > - 0 0 45 59,-0.3 3,-0.6 62,-0.1 35,-0.2 -0.536 31.7-157.4 -65.5 129.6 3.7 -17.5 37.8 13 19 P E T 3 S+ 0 0 105 -2,-0.3 -1,-0.1 1,-0.2 34,-0.1 0.721 82.2 72.5 -84.3 -23.0 5.8 -18.7 34.8 14 20 P K T 3 S+ 0 0 183 33,-0.0 2,-0.2 2,-0.0 -1,-0.2 0.535 76.9 105.6 -70.3 -7.6 3.1 -20.7 33.2 15 21 P I S < S- 0 0 19 -3,-0.6 32,-0.1 1,-0.1 -4,-0.0 -0.538 71.9-118.4 -83.2 140.8 1.3 -17.5 32.1 16 22 P K > - 0 0 131 -2,-0.2 4,-2.0 1,-0.1 5,-0.2 -0.125 21.2-112.4 -70.7 168.4 1.4 -16.3 28.5 17 23 P K H > S+ 0 0 106 2,-0.2 4,-1.5 1,-0.2 5,-0.2 0.905 116.0 44.6 -67.8 -44.5 2.9 -13.0 27.2 18 24 P D H > S+ 0 0 135 2,-0.2 4,-2.1 1,-0.1 5,-0.2 0.930 117.3 43.7 -64.4 -50.3 -0.5 -11.5 26.3 19 25 P E H > S+ 0 0 91 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.950 109.7 54.7 -63.8 -52.6 -2.3 -12.6 29.4 20 26 P L H X S+ 0 0 6 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.888 111.8 44.3 -50.4 -50.7 0.4 -11.6 31.9 21 27 P K H X S+ 0 0 68 -4,-1.5 4,-3.5 2,-0.2 5,-0.2 0.947 112.6 50.5 -59.5 -53.3 0.5 -8.0 30.6 22 28 P K H X S+ 0 0 149 -4,-2.1 4,-1.8 1,-0.2 -2,-0.2 0.863 113.2 48.2 -52.7 -39.9 -3.3 -7.6 30.4 23 29 P S H X S+ 0 0 16 -4,-2.7 4,-0.9 2,-0.2 -1,-0.2 0.874 113.9 43.8 -71.9 -41.1 -3.5 -8.8 34.0 24 30 P L H >X S+ 0 0 0 -4,-2.2 4,-2.6 -5,-0.2 3,-0.6 0.921 111.5 55.6 -67.8 -45.1 -0.7 -6.5 35.3 25 31 P H H 3X S+ 0 0 99 -4,-3.5 4,-0.8 1,-0.3 -2,-0.2 0.896 107.4 49.4 -50.1 -48.6 -2.2 -3.6 33.3 26 32 P A H 3< S+ 0 0 75 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.764 115.2 45.8 -64.0 -27.5 -5.5 -4.1 35.1 27 33 P I H X< S+ 0 0 36 -4,-0.9 3,-0.7 -3,-0.6 -2,-0.2 0.920 113.3 41.3 -85.0 -48.0 -3.8 -4.2 38.5 28 34 P F H >< S+ 0 0 0 -4,-2.6 3,-1.4 1,-0.2 4,-0.4 0.410 87.3 87.7 -91.5 2.0 -1.4 -1.3 38.5 29 35 P S G >< S+ 0 0 70 -4,-0.8 3,-0.7 1,-0.3 -1,-0.2 0.735 74.8 76.1 -68.4 -21.9 -3.6 1.3 36.8 30 36 P R G < S+ 0 0 160 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.1 0.594 98.5 44.4 -59.6 -13.7 -4.9 2.1 40.3 31 37 P F G < S- 0 0 20 -3,-1.4 2,-0.3 1,-0.4 -1,-0.2 0.541 125.4 -62.1-115.1 -13.2 -1.6 4.0 41.0 32 38 P G S < S- 0 0 23 -3,-0.7 2,-0.5 -4,-0.4 -1,-0.4 -0.965 74.0 -38.0 157.2-168.2 -1.1 6.0 37.8 33 39 P Q - 0 0 136 -2,-0.3 21,-1.6 -3,-0.1 2,-0.5 -0.772 47.3-146.8 -90.0 128.3 -0.6 5.7 34.0 34 40 P I E -C 53 0A 25 -2,-0.5 19,-0.2 19,-0.2 3,-0.1 -0.840 7.5-166.2 -93.0 124.6 1.6 2.8 32.8 35 41 P L E S- 0 0 95 17,-2.3 2,-0.3 -2,-0.5 -1,-0.2 0.953 71.5 -19.3 -72.5 -53.2 3.6 3.7 29.7 36 42 P D E -C 52 0A 75 16,-0.6 16,-1.7 2,-0.0 2,-0.6 -0.975 54.4-135.7-156.5 146.1 4.5 0.1 28.9 37 43 P I E -C 51 0A 6 -2,-0.3 2,-0.8 14,-0.2 14,-0.2 -0.918 21.0-148.9-103.2 121.2 4.8 -3.3 30.7 38 44 P L E +C 50 0A 73 12,-3.2 12,-2.0 -2,-0.6 2,-0.4 -0.809 29.0 159.2 -97.6 105.8 7.9 -5.2 29.9 39 45 P V + 0 0 12 -2,-0.8 2,-0.3 10,-0.2 10,-0.1 -0.992 5.7 163.9-129.6 122.8 7.4 -8.9 29.9 40 46 P S - 0 0 43 8,-0.5 8,-0.3 -2,-0.4 -2,-0.0 -0.976 29.6-148.3-131.7 149.9 9.5 -11.5 28.2 41 47 P R + 0 0 85 -2,-0.3 5,-0.2 5,-0.1 2,-0.0 0.052 48.7 138.4-106.9 24.8 9.6 -15.3 28.9 42 48 P S S >> S- 0 0 64 3,-0.1 3,-2.2 1,-0.1 4,-1.1 -0.337 72.5 -93.9 -67.8 152.2 13.3 -15.8 28.1 43 49 P L G >4 S+ 0 0 140 1,-0.3 3,-0.6 2,-0.2 -1,-0.1 0.797 126.4 34.9 -31.9 -57.1 15.3 -18.1 30.4 44 50 P K G 34 S+ 0 0 168 1,-0.2 -1,-0.3 3,-0.0 -2,-0.0 0.641 119.2 52.0 -79.0 -15.3 16.6 -15.3 32.7 45 51 P M G X4 S+ 0 0 44 -3,-2.2 3,-1.0 2,-0.0 -5,-0.4 0.371 77.4 121.4-108.0 3.9 13.4 -13.2 32.4 46 52 P R T << S+ 0 0 108 -4,-1.1 -35,-0.1 -3,-0.6 -33,-0.1 -0.227 76.4 16.2 -61.9 155.0 10.7 -15.8 33.4 47 53 P G T 3 S+ 0 0 10 -35,-0.2 -36,-1.9 -32,-0.1 -37,-0.7 0.721 111.3 92.5 51.6 27.3 8.5 -15.1 36.4 48 54 P Q E < -A 9 0A 29 -3,-1.0 -8,-0.5 -8,-0.3 2,-0.3 -0.991 48.5-178.3-147.1 153.7 9.4 -11.4 36.4 49 55 P A E -A 8 0A 0 -41,-2.0 -41,-2.2 -2,-0.3 2,-0.4 -0.947 19.2-136.7-145.1 161.5 8.1 -8.2 34.8 50 56 P F E -AC 7 38A 53 -12,-2.0 -12,-3.2 -2,-0.3 2,-0.6 -0.992 14.2-166.5-126.7 126.3 8.9 -4.4 34.6 51 57 P V E -AC 6 37A 0 -45,-1.9 -45,-2.1 -2,-0.4 2,-0.6 -0.948 6.9-156.9-117.1 117.2 6.2 -1.8 35.0 52 58 P I E -AC 5 36A 1 -16,-1.7 -17,-2.3 -2,-0.6 -16,-0.6 -0.829 13.7-160.4-100.7 119.6 7.0 1.8 33.9 53 59 P F E - C 0 34A 1 -49,-2.0 -19,-0.2 -2,-0.6 3,-0.0 -0.538 27.4-121.3-100.7 161.1 4.9 4.6 35.5 54 60 P K S S+ 0 0 125 -21,-1.6 2,-0.3 -2,-0.2 -1,-0.1 0.971 99.2 18.6 -61.8 -58.3 4.2 8.2 34.6 55 61 P E S > S- 0 0 83 -22,-0.1 4,-0.9 -51,-0.1 3,-0.3 -0.791 77.8-120.4-112.6 160.8 5.6 9.6 37.9 56 62 P V H > S+ 0 0 51 -2,-0.3 4,-1.8 1,-0.2 3,-0.3 0.821 113.1 61.0 -65.5 -33.7 7.9 8.0 40.5 57 63 P S H > S+ 0 0 66 1,-0.2 4,-3.3 2,-0.2 -1,-0.2 0.862 96.0 60.5 -60.9 -38.9 5.2 8.3 43.2 58 64 P S H > S+ 0 0 4 -3,-0.3 4,-2.1 1,-0.2 -1,-0.2 0.876 106.3 47.1 -55.4 -41.2 2.9 6.1 41.1 59 65 P A H X S+ 0 0 0 -4,-0.9 4,-3.1 -3,-0.3 -1,-0.2 0.877 111.6 50.6 -67.3 -40.5 5.6 3.4 41.5 60 66 P T H X S+ 0 0 34 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.935 110.4 48.8 -64.0 -47.9 5.9 4.0 45.2 61 67 P N H X S+ 0 0 81 -4,-3.3 4,-1.3 1,-0.2 -2,-0.2 0.941 115.2 45.8 -53.8 -50.4 2.1 3.8 45.7 62 68 P A H X S+ 0 0 0 -4,-2.1 4,-1.4 -5,-0.2 3,-0.4 0.929 113.4 48.9 -57.2 -50.1 2.1 0.6 43.7 63 69 P L H < S+ 0 0 28 -4,-3.1 4,-0.3 1,-0.2 -1,-0.2 0.836 113.1 45.9 -62.7 -37.0 5.1 -0.9 45.6 64 70 P R H < S+ 0 0 196 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.707 117.9 40.2 -84.2 -20.3 3.8 -0.1 49.1 65 71 P S H < S+ 0 0 73 -4,-1.3 -2,-0.2 -3,-0.4 -1,-0.2 0.586 117.1 44.8-103.3 -14.1 0.2 -1.4 48.5 66 72 P M S >< S+ 0 0 7 -4,-1.4 3,-1.8 -5,-0.2 2,-0.5 0.199 70.5 134.4-119.0 12.3 0.8 -4.6 46.5 67 73 P Q T 3 S+ 0 0 92 -4,-0.3 10,-0.2 1,-0.3 -4,-0.0 -0.546 87.8 1.3 -72.4 120.0 3.8 -6.2 48.3 68 74 P G T 3 S+ 0 0 34 8,-2.2 -1,-0.3 -2,-0.5 9,-0.1 0.757 89.5 165.2 72.4 26.1 3.0 -9.9 48.7 69 75 P F < - 0 0 83 -3,-1.8 7,-2.3 7,-0.2 2,-0.8 -0.668 44.2-118.6 -75.6 118.8 -0.3 -9.4 46.8 70 76 P P E +D 75 0B 92 0, 0.0 2,-0.5 0, 0.0 3,-0.2 -0.466 44.0 171.1 -65.1 103.9 -1.5 -12.9 45.8 71 77 P F E > -D 74 0B 10 3,-2.9 3,-0.7 -2,-0.8 -59,-0.3 -0.973 68.1 -10.0-122.1 113.7 -1.6 -12.7 42.0 72 78 P Y T 3 S- 0 0 78 -2,-0.5 -1,-0.2 1,-0.2 -57,-0.1 0.971 132.4 -49.2 61.1 57.8 -2.2 -16.0 40.2 73 79 P D T 3 S+ 0 0 159 -3,-0.2 -1,-0.2 1,-0.1 0, 0.0 0.429 127.3 91.2 65.0 2.1 -1.9 -18.2 43.3 74 80 P K E < S-D 71 0B 69 -3,-0.7 -3,-2.9 -5,-0.1 2,-0.4 -0.980 76.1-127.2-135.4 124.0 1.4 -16.4 44.1 75 81 P P E -D 70 0B 66 0, 0.0 -6,-0.1 0, 0.0 -8,-0.1 -0.531 38.8-120.9 -64.0 119.5 2.1 -13.3 46.3 76 82 P M - 0 0 4 -7,-2.3 -8,-2.2 -2,-0.4 2,-0.6 -0.219 10.7-143.2 -66.2 150.0 4.2 -10.9 44.3 77 83 P R E -B 9 0A 136 -68,-2.0 -68,-1.9 -10,-0.2 2,-0.5 -0.961 26.3-173.7-112.9 108.2 7.6 -9.6 45.3 78 84 P I E +B 8 0A 7 -2,-0.6 2,-0.3 -70,-0.2 -70,-0.2 -0.902 14.4 151.8-111.1 130.4 7.8 -6.0 44.3 79 85 P Q E -B 7 0A 99 -72,-2.5 -72,-3.7 -2,-0.5 2,-0.1 -0.962 48.4 -87.2-144.1 162.4 10.9 -3.7 44.4 80 86 P Y E -B 6 0A 38 -2,-0.3 2,-0.3 -74,-0.3 -74,-0.3 -0.411 46.5-106.0 -66.7 142.8 12.1 -0.7 42.5 81 87 P A - 0 0 7 -76,-2.6 -76,-0.2 -78,-0.2 -1,-0.1 -0.581 25.5-142.2 -66.5 129.2 14.1 -1.3 39.3 82 88 P K S S+ 0 0 208 -2,-0.3 2,-0.4 1,-0.1 -1,-0.1 0.711 84.7 42.1 -72.3 -22.2 17.7 -0.4 40.3 83 89 P T S S- 0 0 102 -80,-0.0 -1,-0.1 -78,-0.0 -80,-0.1 -0.979 96.2-103.2-126.8 140.6 18.4 1.1 36.9 84 90 P D - 0 0 94 -2,-0.4 -2,-0.1 1,-0.1 2,-0.0 -0.321 42.6-105.2 -62.0 137.8 16.1 3.4 34.9 85 91 P S >> - 0 0 22 1,-0.1 4,-2.0 -4,-0.1 3,-1.3 -0.343 30.5-109.7 -64.7 146.8 14.3 1.9 32.0 86 92 P D T 34 S+ 0 0 121 1,-0.3 -1,-0.1 2,-0.2 -2,-0.1 0.665 118.1 58.2 -54.6 -22.0 15.6 2.7 28.5 87 93 P I T >4 S+ 0 0 87 2,-0.1 3,-0.8 1,-0.1 -1,-0.3 0.882 108.6 43.6 -73.8 -41.3 12.5 4.8 27.8 88 94 P I T <4 S+ 0 0 48 -3,-1.3 -2,-0.2 1,-0.2 -1,-0.1 0.866 103.8 63.6 -72.2 -38.0 13.1 7.1 30.8 89 95 P A T 3< 0 0 78 -4,-2.0 -1,-0.2 -5,-0.0 -2,-0.1 0.416 360.0 360.0 -67.0 5.4 16.8 7.4 30.0 90 96 P K < 0 0 199 -3,-0.8 -3,-0.1 -5,-0.2 -5,-0.0 -0.408 360.0 360.0-129.6 360.0 15.5 9.1 26.9