==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DE NOVO PROTEIN 24-SEP-02 1MV4 . COMPND 2 MOLECULE: TROPOMYOSIN 1 ALPHA CHAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR N.J.GREENFIELD,G.V.T.SWAPNA,Y.HUANG,T.PALM,S.GRABOSKI, . 74 2 1 0 1 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6065.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 78.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 68.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 248 A G > > 0 0 24 0, 0.0 6,-1.4 0, 0.0 5,-1.1 0.000 360.0 360.0 360.0 -7.3 -19.8 -3.3 22.6 2 249 A a T 3 5 - 0 0 36 4,-0.3 38,-0.1 1,-0.2 5,-0.0 -0.038 360.0 -80.8 47.4-154.9 -22.9 -1.2 23.2 3 250 A G T 3 5S+ 0 0 72 36,-0.2 -1,-0.2 3,-0.0 37,-0.0 -0.156 114.8 41.6-135.4 38.4 -24.7 0.0 20.1 4 251 A K T < 5S- 0 0 190 -3,-0.7 -2,-0.1 0, 0.0 36,-0.0 0.291 128.8 -36.7-141.5 -81.1 -22.6 3.0 19.0 5 252 A S T 5S+ 0 0 75 2,-0.1 4,-0.2 3,-0.0 -3,-0.1 -0.084 97.7 107.8-151.0 37.2 -18.8 2.7 19.2 6 253 A I >>< + 0 0 8 -5,-1.1 4,-2.8 2,-0.2 3,-0.5 0.778 66.7 72.9 -86.5 -31.3 -18.2 0.7 22.4 7 254 A D H 3> S+ 0 0 97 -6,-1.4 4,-2.6 1,-0.3 5,-0.2 0.942 99.2 44.9 -45.6 -61.6 -17.1 -2.4 20.4 8 255 A D H 3> S+ 0 0 102 1,-0.2 4,-3.0 2,-0.2 -1,-0.3 0.768 112.4 58.0 -55.0 -25.6 -13.8 -0.8 19.5 9 256 A L H <> S+ 0 0 21 -3,-0.5 4,-3.0 -4,-0.2 -2,-0.2 0.984 106.6 42.4 -68.0 -60.6 -13.7 0.2 23.1 10 257 A E H X S+ 0 0 72 -4,-2.8 4,-2.5 2,-0.2 5,-0.3 0.846 118.3 50.2 -54.3 -36.4 -14.0 -3.3 24.6 11 258 A D H X S+ 0 0 99 -4,-2.6 4,-2.7 -5,-0.3 5,-0.2 0.988 113.4 41.2 -65.6 -62.0 -11.5 -4.3 21.9 12 259 A E H X S+ 0 0 58 -4,-3.0 4,-2.6 2,-0.2 -2,-0.2 0.801 116.8 55.6 -55.7 -30.4 -8.9 -1.6 22.6 13 260 A L H X S+ 0 0 21 -4,-3.0 4,-1.9 2,-0.2 3,-0.4 1.000 109.8 38.8 -64.9 -73.9 -9.6 -2.2 26.3 14 261 A Y H X S+ 0 0 163 -4,-2.5 4,-2.4 1,-0.3 5,-0.2 0.823 119.6 51.7 -45.4 -36.9 -8.9 -5.9 26.5 15 262 A A H X S+ 0 0 34 -4,-2.7 4,-2.6 -5,-0.3 -1,-0.3 0.920 105.9 52.3 -67.5 -45.7 -6.0 -5.2 24.1 16 263 A Q H X S+ 0 0 13 -4,-2.6 4,-1.3 -3,-0.4 -1,-0.2 0.767 110.4 52.3 -61.0 -26.1 -4.7 -2.4 26.3 17 264 A K H X S+ 0 0 62 -4,-1.9 4,-2.0 2,-0.2 5,-0.3 0.978 114.8 36.5 -73.2 -60.2 -4.8 -4.9 29.2 18 265 A L H X S+ 0 0 120 -4,-2.4 4,-1.5 1,-0.3 -2,-0.2 0.761 121.5 50.6 -63.3 -25.1 -2.9 -7.7 27.5 19 266 A K H X S+ 0 0 101 -4,-2.6 4,-2.0 -5,-0.2 -1,-0.3 0.781 105.5 55.7 -81.5 -30.0 -0.8 -4.9 26.0 20 267 A Y H X S+ 0 0 108 -4,-1.3 4,-1.9 -5,-0.2 -2,-0.2 0.868 116.5 35.4 -69.0 -38.6 -0.3 -3.3 29.3 21 268 A K H X S+ 0 0 118 -4,-2.0 4,-2.2 2,-0.2 5,-0.2 0.802 118.5 51.7 -83.4 -33.1 1.2 -6.4 30.8 22 269 A A H X S+ 0 0 45 -4,-1.5 4,-2.0 -5,-0.3 -2,-0.2 0.803 115.5 42.9 -71.9 -30.4 2.9 -7.4 27.6 23 270 A I H X S+ 0 0 19 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.901 112.1 52.1 -80.2 -45.6 4.4 -3.9 27.4 24 271 A S H X S+ 0 0 51 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.916 119.5 36.5 -55.9 -47.0 5.3 -3.8 31.1 25 272 A E H X S+ 0 0 115 -4,-2.2 4,-3.4 2,-0.2 5,-0.4 0.959 116.8 50.3 -70.7 -54.0 7.1 -7.2 30.8 26 273 A E H X S+ 0 0 134 -4,-2.0 4,-1.3 -5,-0.2 -2,-0.2 0.769 113.3 51.7 -55.2 -26.5 8.5 -6.6 27.3 27 274 A L H X S+ 0 0 25 -4,-2.3 4,-2.2 2,-0.2 5,-0.3 0.980 110.8 42.0 -73.8 -62.0 9.7 -3.3 28.7 28 275 A D H X S+ 0 0 106 -4,-2.4 4,-2.9 1,-0.3 -2,-0.2 0.874 122.1 43.9 -52.0 -40.4 11.5 -4.6 31.7 29 276 A H H X S+ 0 0 124 -4,-3.4 4,-2.9 2,-0.2 -1,-0.3 0.819 106.1 61.6 -74.0 -32.5 12.8 -7.4 29.5 30 277 A A H X S+ 0 0 33 -4,-1.3 4,-0.6 -5,-0.4 -2,-0.2 0.858 115.7 33.0 -60.8 -36.4 13.6 -4.9 26.8 31 278 A L H X S+ 0 0 56 -4,-2.2 4,-4.4 2,-0.2 -2,-0.2 0.874 115.4 56.2 -85.4 -43.9 16.0 -3.2 29.1 32 279 A K H < S+ 0 0 139 -4,-2.9 -2,-0.2 -5,-0.3 -3,-0.2 0.854 110.9 46.8 -55.6 -36.4 17.1 -6.4 30.9 33 280 A D H < S+ 0 0 140 -4,-2.9 -1,-0.3 1,-0.1 -2,-0.2 0.801 116.9 44.7 -74.9 -30.7 18.0 -7.7 27.5 34 281 A M H < S+ 0 0 32 -4,-0.6 -2,-0.2 -5,-0.2 -3,-0.2 0.949 86.2 170.3 -77.0 -53.7 19.8 -4.4 26.8 35 282 A T < - 0 0 83 -4,-4.4 2,-1.2 1,-0.1 -3,-0.1 0.373 59.7 -38.9 55.1 160.0 21.6 -4.0 30.0 36 283 A S 0 0 109 1,-0.2 -1,-0.1 -4,-0.0 -4,-0.0 -0.314 360.0 360.0 -54.2 91.2 24.2 -1.4 30.6 37 284 A I 0 0 103 -2,-1.2 -1,-0.2 35,-0.1 37,-0.1 0.966 360.0 360.0 -75.7 360.0 25.8 -1.7 27.1 38 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 39 248 B G 0 0 129 0, 0.0 -36,-0.2 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0-174.6 -28.2 1.2 27.8 40 249 B a - 0 0 55 2,-0.1 3,-0.1 -38,-0.1 -34,-0.0 0.642 360.0 -81.8-117.4 -77.5 -25.2 -0.7 26.3 41 250 B G S S- 0 0 67 -40,-0.0 0, 0.0 -38,-0.0 0, 0.0 0.251 93.8 -26.4-167.3 -35.6 -25.1 -4.3 27.5 42 251 B K S S- 0 0 202 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 0.052 119.7 -12.8-151.9 -90.2 -23.4 -4.3 30.9 43 252 B S + 0 0 80 1,-0.1 4,-0.3 2,-0.1 0, 0.0 -0.724 62.7 148.7-134.4 82.9 -21.0 -1.7 32.1 44 253 B I S > S+ 0 0 10 -2,-0.3 4,-2.3 2,-0.2 3,-0.3 0.852 71.6 62.8 -80.6 -38.4 -19.9 0.5 29.2 45 254 B D H > S+ 0 0 143 1,-0.3 4,-2.2 2,-0.2 3,-0.2 0.963 104.6 44.5 -48.7 -65.6 -19.4 3.6 31.4 46 255 B D H > S+ 0 0 92 1,-0.2 4,-2.9 2,-0.2 -1,-0.3 0.738 110.2 63.3 -52.3 -22.4 -16.7 2.0 33.5 47 256 B L H > S+ 0 0 17 -3,-0.3 4,-3.2 -4,-0.3 -2,-0.2 0.985 102.7 42.5 -66.2 -60.8 -15.4 0.9 30.2 48 257 B E H X S+ 0 0 77 -4,-2.3 4,-3.2 -3,-0.2 5,-0.2 0.846 117.2 52.0 -53.7 -36.6 -14.8 4.3 28.8 49 258 B D H X S+ 0 0 113 -4,-2.2 4,-2.5 -5,-0.3 5,-0.2 0.996 113.7 38.6 -63.3 -66.4 -13.3 5.2 32.2 50 259 B E H X S+ 0 0 84 -4,-2.9 4,-2.2 1,-0.2 -2,-0.2 0.809 118.3 55.4 -53.9 -31.6 -10.9 2.3 32.5 51 260 B L H X S+ 0 0 11 -4,-3.2 4,-2.0 -5,-0.2 3,-0.3 0.996 106.0 45.9 -64.7 -66.3 -10.3 2.8 28.8 52 261 B Y H X S+ 0 0 161 -4,-3.2 4,-2.2 1,-0.3 3,-0.4 0.875 114.9 49.7 -42.7 -48.7 -9.3 6.5 28.9 53 262 B A H X S+ 0 0 54 -4,-2.5 4,-1.9 1,-0.3 -1,-0.3 0.918 108.9 51.6 -58.3 -45.9 -7.1 5.7 31.9 54 263 B Q H X S+ 0 0 30 -4,-2.2 4,-1.4 -3,-0.3 -1,-0.3 0.769 107.5 56.4 -61.9 -26.4 -5.5 2.8 29.9 55 264 B K H X S+ 0 0 65 -4,-2.0 4,-2.0 -3,-0.4 3,-0.4 0.970 108.1 42.9 -69.2 -56.4 -5.0 5.3 27.1 56 265 B L H X S+ 0 0 127 -4,-2.2 4,-1.8 1,-0.3 -2,-0.2 0.791 117.3 50.3 -59.4 -28.2 -2.9 7.8 29.2 57 266 B K H X S+ 0 0 93 -4,-1.9 4,-1.6 -5,-0.3 -1,-0.3 0.773 107.6 53.1 -79.5 -28.7 -1.2 4.7 30.6 58 267 B Y H X S+ 0 0 98 -4,-1.4 4,-1.8 -3,-0.4 -2,-0.2 0.790 114.7 40.8 -75.2 -30.0 -0.6 3.4 27.1 59 268 B K H X S+ 0 0 135 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.820 115.9 49.5 -85.1 -35.9 1.0 6.7 26.1 60 269 B A H X S+ 0 0 33 -4,-1.8 4,-2.1 -5,-0.3 -2,-0.2 0.818 118.0 41.6 -71.1 -32.1 2.9 7.0 29.4 61 270 B I H X S+ 0 0 22 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.917 113.6 50.4 -79.5 -48.2 4.1 3.5 29.0 62 271 B S H X S+ 0 0 49 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.859 117.2 43.4 -57.3 -37.4 4.9 3.7 25.3 63 272 B E H X S+ 0 0 97 -4,-2.0 4,-3.6 2,-0.2 5,-0.4 0.968 113.1 47.8 -72.2 -56.8 6.8 6.8 26.1 64 273 B E H X S+ 0 0 138 -4,-2.1 4,-1.2 1,-0.2 -2,-0.2 0.751 114.9 52.3 -55.8 -24.3 8.6 5.6 29.2 65 274 B L H X S+ 0 0 31 -4,-2.1 4,-2.0 2,-0.2 5,-0.3 0.978 112.0 39.5 -75.2 -62.2 9.4 2.5 27.1 66 275 B D H X S+ 0 0 97 -4,-2.4 4,-2.9 1,-0.3 -2,-0.2 0.884 122.0 46.0 -54.1 -41.3 10.9 4.2 24.0 67 276 B H H X S+ 0 0 112 -4,-3.6 4,-3.1 2,-0.2 -1,-0.3 0.844 105.3 60.6 -70.1 -35.0 12.6 6.6 26.4 68 277 B A H < S+ 0 0 23 -4,-1.2 4,-0.4 -5,-0.4 -2,-0.2 0.857 115.5 34.1 -59.6 -36.3 13.7 3.7 28.6 69 278 B L H >X S+ 0 0 68 -4,-2.0 3,-0.7 2,-0.2 4,-0.7 0.828 114.8 56.9 -86.0 -37.4 15.6 2.4 25.6 70 279 B K H >< S+ 0 0 146 -4,-2.9 3,-0.7 -5,-0.3 -2,-0.2 0.847 99.7 60.8 -61.3 -34.9 16.5 5.8 24.3 71 280 B D T 3< S+ 0 0 146 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.832 108.7 42.9 -60.6 -33.2 18.1 6.5 27.6 72 281 B M T <4 S- 0 0 28 -3,-0.7 -1,-0.3 -4,-0.4 -2,-0.2 0.531 106.4-150.6 -88.7 -8.9 20.4 3.6 26.9 73 282 B T << - 0 0 85 -3,-0.7 2,-1.7 -4,-0.7 -2,-0.1 0.316 38.1 -59.6 55.0 164.9 20.8 4.8 23.3 74 283 B S 0 0 121 1,-0.2 -1,-0.2 -4,-0.1 -4,-0.1 -0.614 360.0 360.0 -81.4 85.6 21.5 2.4 20.4 75 284 B I 0 0 118 -2,-1.7 -1,-0.2 -3,-0.2 -2,-0.1 0.726 360.0 360.0 -72.4 360.0 24.7 0.9 21.7