==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN 01-OCT-02 1MX8 . COMPND 2 MOLECULE: CELLULAR RETINOL-BINDING PROTEIN I, HOLO; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.LU,D.P.CISTOLA,E.LI . 134 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8499.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 63.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 46 34.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 1 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 146 0, 0.0 2,-0.3 0, 0.0 109,-0.2 0.000 360.0 360.0 360.0 68.5 58.3 54.4 76.8 2 2 A V + 0 0 64 90,-0.0 2,-0.2 0, 0.0 90,-0.0 -0.929 360.0 159.2-152.6 123.5 58.3 53.4 73.2 3 3 A D + 0 0 84 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.690 3.4 169.7-149.4 89.0 57.6 50.1 71.7 4 4 A F + 0 0 11 -2,-0.2 2,-1.4 1,-0.1 38,-0.4 0.819 49.3 106.9 -68.1 -33.4 56.6 50.1 68.1 5 5 A N + 0 0 92 36,-0.1 2,-0.2 38,-0.1 38,-0.2 -0.235 67.1 69.2 -55.0 87.5 56.9 46.3 67.7 6 6 A G E S-A 42 0A 23 -2,-1.4 36,-0.5 36,-0.5 2,-0.4 -0.825 87.1 -67.5-168.6-154.6 53.2 45.6 67.5 7 7 A Y E -A 41 0A 92 -2,-0.2 126,-1.7 34,-0.2 127,-0.6 -0.989 38.6-179.5-128.9 130.1 50.1 46.0 65.4 8 8 A W E -AB 40 132A 2 32,-2.3 32,-1.2 -2,-0.4 2,-0.3 -0.971 5.4-170.5-136.4 124.8 48.3 49.1 64.5 9 9 A K E -AB 39 131A 99 122,-3.0 122,-3.5 -2,-0.4 2,-0.2 -0.856 29.2-112.2-111.5 144.9 45.2 49.8 62.4 10 10 A M E - B 0 130A 17 28,-0.5 120,-0.2 27,-0.4 3,-0.1 -0.537 25.1-173.6 -78.4 137.7 43.9 53.1 61.3 11 11 A L E - 0 0 98 118,-2.3 2,-0.3 1,-0.3 -1,-0.2 0.903 57.6 -34.5 -91.9 -56.1 40.7 54.3 62.8 12 12 A S E - B 0 129A 59 117,-0.7 117,-0.6 4,-0.0 -1,-0.3 -0.855 48.1-128.8-153.6-172.2 39.8 57.4 61.0 13 13 A N E - B 0 128A 55 -2,-0.3 115,-0.2 115,-0.2 4,-0.1 -0.962 12.5-177.4-155.7 133.6 41.1 60.5 59.3 14 14 A E S S+ 0 0 162 113,-1.3 114,-0.1 -2,-0.3 -1,-0.1 0.620 93.2 18.9-104.2 -17.3 40.3 64.1 59.7 15 15 A N S > S+ 0 0 34 112,-0.4 4,-1.4 2,-0.1 5,-0.1 -0.002 82.0 112.8-144.4 32.3 42.6 65.5 57.0 16 16 A F T 4 S+ 0 0 45 2,-0.2 4,-0.4 1,-0.2 110,-0.0 0.749 86.1 48.9 -75.0 -23.5 43.6 62.6 54.8 17 17 A E T > S+ 0 0 112 2,-0.2 4,-0.8 1,-0.1 -1,-0.2 0.877 112.5 44.7 -78.7 -44.1 41.6 64.3 52.0 18 18 A E H > S+ 0 0 83 1,-0.2 4,-0.6 2,-0.2 -2,-0.2 0.741 111.5 54.8 -70.8 -29.7 43.2 67.7 52.5 19 19 A Y H X S+ 0 0 46 -4,-1.4 4,-0.6 2,-0.2 -1,-0.2 0.713 103.4 55.1 -77.7 -23.5 46.6 66.1 52.7 20 20 A L H 4>S+ 0 0 16 -4,-0.4 5,-2.6 1,-0.2 -2,-0.2 0.769 103.5 57.4 -77.7 -28.2 46.1 64.4 49.4 21 21 A R H <5S+ 0 0 160 -4,-0.8 3,-0.3 3,-0.2 -2,-0.2 0.744 96.5 62.4 -72.8 -26.0 45.4 67.8 48.0 22 22 A A H <5S+ 0 0 7 -4,-0.6 -1,-0.2 1,-0.2 -2,-0.2 0.793 111.1 37.5 -71.0 -30.3 48.8 69.1 49.1 23 23 A L T <5S- 0 0 13 -4,-0.6 -1,-0.2 -3,-0.2 -2,-0.2 0.314 116.3-119.7-101.3 6.0 50.5 66.6 46.9 24 24 A D T 5 - 0 0 122 -3,-0.3 2,-0.3 1,-0.2 -3,-0.2 0.952 40.2-169.6 50.3 63.3 47.9 67.1 44.3 25 25 A V < - 0 0 13 -5,-2.6 -1,-0.2 1,-0.1 5,-0.1 -0.586 27.9 -94.4 -83.9 141.1 46.6 63.6 44.2 26 26 A N > - 0 0 114 -2,-0.3 4,-1.1 1,-0.1 -1,-0.1 0.044 28.0-116.6 -49.4 160.7 44.3 62.5 41.5 27 27 A V H > S+ 0 0 118 2,-0.2 4,-0.7 1,-0.2 -1,-0.1 0.708 115.1 52.6 -72.3 -24.4 40.5 62.6 42.0 28 28 A A H > S+ 0 0 54 2,-0.2 4,-2.0 1,-0.2 3,-0.2 0.903 106.8 49.5 -77.0 -46.3 40.4 58.8 41.6 29 29 A L H > S+ 0 0 73 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.797 108.5 54.6 -63.4 -30.2 43.1 58.0 44.1 30 30 A R H < S+ 0 0 47 -4,-1.1 4,-0.5 2,-0.2 -1,-0.2 0.766 109.1 48.9 -72.2 -32.3 41.3 60.2 46.6 31 31 A K H X S+ 0 0 134 -4,-0.7 4,-0.5 -3,-0.2 -2,-0.2 0.870 115.9 40.6 -73.9 -41.2 38.2 58.3 46.1 32 32 A I H >X S+ 0 0 62 -4,-2.0 3,-0.8 1,-0.2 4,-0.8 0.868 111.6 56.7 -74.3 -43.7 39.8 54.9 46.4 33 33 A A H 3< S+ 0 0 9 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.642 96.7 66.6 -62.7 -20.6 42.0 56.0 49.3 34 34 A N H 34 S+ 0 0 81 -4,-0.5 -1,-0.2 1,-0.2 -2,-0.2 0.878 105.3 39.8 -70.2 -38.0 38.9 57.0 51.2 35 35 A L H << S+ 0 0 109 -3,-0.8 2,-0.2 -4,-0.5 -1,-0.2 0.616 109.4 85.0 -83.5 -15.8 37.7 53.5 51.6 36 36 A L < + 0 0 35 -4,-0.8 19,-0.0 -5,-0.1 -3,-0.0 -0.581 44.5 164.9 -91.2 150.4 41.2 52.6 52.1 37 37 A K - 0 0 103 -2,-0.2 -27,-0.4 18,-0.1 -3,-0.1 -0.421 30.1-141.5-167.2 76.2 43.0 52.7 55.5 38 38 A P - 0 0 34 0, 0.0 2,-0.6 0, 0.0 -28,-0.5 0.009 10.3-130.7 -44.7 143.6 46.2 50.7 55.4 39 39 A D E -AC 9 54A 53 15,-1.0 15,-1.3 -30,-0.2 2,-0.4 -0.925 18.9-145.6-107.3 117.0 47.2 48.7 58.4 40 40 A K E -A 8 0A 48 -32,-1.2 -32,-2.3 -2,-0.6 2,-0.5 -0.694 13.9-173.3 -89.9 132.3 50.7 49.2 59.7 41 41 A E E -A 7 0A 65 -2,-0.4 11,-1.7 -34,-0.2 2,-0.2 -0.925 12.4-159.1-126.9 99.8 52.7 46.4 61.2 42 42 A I E -AD 6 51A 9 -36,-0.5 -36,-0.5 -2,-0.5 2,-0.4 -0.581 7.5-165.8 -84.6 144.8 56.0 47.6 62.6 43 43 A V E - D 0 50A 59 7,-2.2 7,-1.3 -2,-0.2 2,-0.2 -0.823 9.7-162.5-134.1 90.9 58.9 45.2 63.2 44 44 A Q E + D 0 49A 82 -2,-0.4 5,-0.2 5,-0.2 3,-0.1 -0.514 19.8 161.0 -76.5 137.8 61.6 46.7 65.4 45 45 A D E > - D 0 48A 130 3,-1.3 3,-1.1 1,-0.2 2,-0.4 -0.428 60.6 -70.9-160.6 72.4 65.0 45.0 65.4 46 46 A G T 3 S- 0 0 55 1,-0.2 -1,-0.2 3,-0.0 20,-0.1 -0.673 111.4 -11.2 82.2-126.6 67.8 47.2 66.7 47 47 A D T 3 S+ 0 0 96 -2,-0.4 19,-1.0 -3,-0.1 2,-0.6 0.450 125.5 81.3 -86.9 -5.6 68.8 50.1 64.5 48 48 A H E < +DE 45 65A 90 -3,-1.1 -3,-1.3 17,-0.2 2,-0.4 -0.920 56.7 172.3-110.2 121.1 66.7 48.6 61.8 49 49 A M E -DE 44 64A 8 15,-1.4 15,-2.5 -2,-0.6 2,-0.4 -0.992 13.1-162.5-134.7 123.6 63.0 49.2 61.8 50 50 A I E -DE 43 63A 44 -7,-1.3 -7,-2.2 -2,-0.4 2,-0.7 -0.867 6.0-154.8-108.5 132.5 60.6 48.3 59.1 51 51 A I E -DE 42 62A 29 11,-1.1 11,-0.8 -2,-0.4 -9,-0.2 -0.885 16.8-149.4-111.4 104.4 57.1 49.8 58.8 52 52 A R - 0 0 93 -11,-1.7 2,-0.3 -2,-0.7 -11,-0.1 -0.244 12.2-169.7 -72.2 159.9 54.7 47.5 57.0 53 53 A T + 0 0 16 -13,-0.2 7,-1.0 -12,-0.1 2,-0.5 -0.795 9.4 171.4-156.7 104.6 51.7 48.7 54.9 54 54 A L B +C 39 0A 55 -15,-1.3 -15,-1.0 -2,-0.3 5,-0.1 -0.904 16.9 148.5-125.2 97.8 49.2 46.2 53.8 55 55 A S - 0 0 17 -2,-0.5 -1,-0.1 3,-0.2 -18,-0.1 0.296 63.0-118.7-108.6 5.3 46.2 47.7 52.2 56 56 A T S S+ 0 0 137 1,-0.1 3,-0.1 -3,-0.1 -2,-0.1 0.713 103.5 76.6 62.8 18.6 45.7 44.8 49.9 57 57 A F S S- 0 0 122 1,-0.2 2,-0.3 0, 0.0 -1,-0.1 0.666 109.3 -12.5-118.1 -57.3 46.1 47.4 47.1 58 58 A R - 0 0 160 2,-0.0 2,-0.4 -5,-0.0 -3,-0.2 -0.913 64.1-129.3-158.6 124.2 49.8 48.0 46.9 59 59 A N + 0 0 103 -2,-0.3 2,-0.4 -5,-0.1 -5,-0.1 -0.585 24.2 178.4 -79.2 125.4 52.6 47.1 49.3 60 60 A Y + 0 0 50 -7,-1.0 2,-0.3 -2,-0.4 -1,-0.0 -0.746 6.9 176.7-135.0 88.0 54.9 49.9 50.3 61 61 A I - 0 0 60 -2,-0.4 2,-0.3 -9,-0.1 -9,-0.1 -0.675 6.8-166.9 -93.8 145.5 57.5 48.9 52.8 62 62 A M E -E 51 0A 32 -11,-0.8 -11,-1.1 -2,-0.3 2,-0.6 -0.889 19.6-134.8-130.2 158.7 60.2 51.1 54.1 63 63 A D E -E 50 0A 77 -2,-0.3 2,-1.0 -13,-0.2 -13,-0.2 -0.853 19.3-165.2-120.1 94.8 63.4 50.6 56.1 64 64 A F E -E 49 0A 29 -15,-2.5 -15,-1.4 -2,-0.6 2,-1.1 -0.737 2.0-163.4 -86.6 102.0 63.7 53.2 58.8 65 65 A Q E > -E 48 0A 69 -2,-1.0 3,-2.3 3,-0.2 21,-0.4 -0.770 23.3-129.4 -89.2 96.0 67.2 53.2 60.0 66 66 A V T 3 S+ 0 0 43 -2,-1.1 21,-0.1 -19,-1.0 3,-0.1 -0.277 89.0 2.3 -53.9 116.1 67.0 55.0 63.4 67 67 A G T 3 S+ 0 0 53 19,-1.5 2,-0.3 1,-0.3 -1,-0.3 0.108 117.8 96.0 92.2 -15.6 69.6 57.7 63.5 68 68 A K S < S- 0 0 108 -3,-2.3 18,-0.4 -21,-0.2 -1,-0.3 -0.751 72.5-114.4-109.0 155.0 70.7 57.0 60.0 69 69 A E + 0 0 89 -2,-0.3 2,-0.3 16,-0.1 16,-0.2 -0.583 33.4 166.6 -90.0 149.8 69.8 58.5 56.6 70 70 A F E -G 84 0B 19 14,-1.8 14,-2.7 -2,-0.2 12,-0.0 -0.955 33.9-109.2-161.8 143.5 68.0 56.9 53.7 71 71 A E E -G 83 0B 131 -2,-0.3 12,-0.3 12,-0.2 2,-0.2 -0.193 25.8-156.0 -68.5 162.2 66.4 57.8 50.5 72 72 A E E -G 82 0B 23 10,-2.9 2,-0.7 -10,-0.1 10,-0.6 -0.700 5.3-163.3-154.1 95.1 62.6 57.6 50.1 73 73 A D E -G 81 0B 72 8,-0.2 8,-0.3 -2,-0.2 6,-0.1 -0.701 2.2-166.9 -79.8 109.8 60.9 57.3 46.8 74 74 A L >>> + 0 0 27 6,-2.4 3,-2.1 -2,-0.7 4,-1.6 -0.001 33.6 145.8 -86.9 24.2 57.3 58.2 47.2 75 75 A T T 345 + 0 0 78 5,-0.4 -2,-0.1 1,-0.2 6,-0.0 -0.555 65.9 37.3 -70.8 114.6 56.3 56.8 43.8 76 76 A G T 345S+ 0 0 24 -2,-0.6 -1,-0.2 -16,-0.0 -2,-0.1 -0.016 117.1 54.2 132.3 -20.6 52.9 55.4 44.2 77 77 A I T <45S- 0 0 49 -3,-2.1 -2,-0.2 3,-0.1 -54,-0.0 0.845 139.8 -34.6-100.4 -69.7 51.8 58.1 46.5 78 78 A D T <5S- 0 0 20 -4,-1.6 -3,-0.2 -53,-0.1 -4,-0.1 0.058 87.0 -98.5-149.1 22.2 52.5 61.3 44.7 79 79 A D S S-K 124 0C 5 3,-2.8 3,-1.9 -2,-0.4 -18,-0.2 -0.805 70.6 -21.5-162.0 116.2 53.0 68.9 54.7 122 122 A E T 3 S- 0 0 87 1,-0.3 -19,-0.3 -2,-0.3 3,-0.1 0.685 127.5 -49.8 60.2 22.3 53.2 72.2 53.0 123 123 A G T 3 S+ 0 0 48 1,-0.4 2,-0.4 -22,-0.0 -1,-0.3 0.416 114.0 121.3 97.4 0.9 52.0 73.8 56.1 124 124 A V E < -K 121 0C 28 -3,-1.9 -3,-2.8 -105,-0.1 2,-0.5 -0.815 53.7-142.5-102.9 139.4 49.0 71.5 56.5 125 125 A T E -K 120 0C 54 -2,-0.4 2,-0.6 -5,-0.2 -5,-0.2 -0.880 12.6-168.1-106.8 125.7 48.5 69.3 59.5 126 126 A C E -K 119 0C 0 -7,-2.8 -7,-2.1 -2,-0.5 2,-0.7 -0.911 3.0-164.7-118.8 111.1 47.2 65.8 59.2 127 127 A K + 0 0 87 -2,-0.6 -113,-1.3 -9,-0.2 2,-0.5 -0.845 13.2 173.1-100.2 115.1 46.0 63.9 62.3 128 128 A Q E -B 13 0A 12 -2,-0.7 2,-0.6 -11,-0.4 -11,-0.2 -0.988 17.4-152.2-123.4 116.1 45.6 60.2 61.7 129 129 A V E -B 12 0A 45 -117,-0.6 -118,-2.3 -2,-0.5 -117,-0.7 -0.840 8.9-167.8-100.7 118.5 44.9 58.0 64.7 130 130 A F E -BF 10 115A 12 -15,-2.1 -15,-1.4 -2,-0.6 2,-0.4 -0.816 8.3-150.1-104.3 139.8 46.0 54.5 64.7 131 131 A K E -BF 9 114A 98 -122,-3.5 -122,-3.0 -2,-0.4 -17,-0.2 -0.874 19.9-111.3-112.5 140.9 44.8 52.0 67.2 132 132 A K E -B 8 0A 65 -19,-1.7 -124,-0.2 -2,-0.4 -19,-0.1 -0.421 24.1-172.7 -66.0 140.8 46.5 48.9 68.6 133 133 A V 0 0 44 -126,-1.7 -1,-0.1 -2,-0.1 -125,-0.1 0.636 360.0 360.0-106.3 -25.3 44.9 45.7 67.6 134 134 A H 0 0 197 -127,-0.6 -2,-0.1 0, 0.0 -126,-0.1 0.726 360.0 360.0 41.7 360.0 46.9 43.3 69.7