==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-OCT-02 1MZI . COMPND 2 MOLECULE: 2F5 EPITOPE OF HIV-1 GP41 FUSION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.BARBATO,E.BIANCHI,P.INGALLINELLA,W.H.HURNI,M.D.MILLER, . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1782.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 214 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.9 4.2 -4.8 -11.5 2 2 A L > - 0 0 157 1,-0.1 3,-0.6 2,-0.1 0, 0.0 0.970 360.0 -29.5 53.2 91.0 0.6 -5.8 -12.7 3 3 A L T 3 S- 0 0 145 1,-0.2 2,-0.6 2,-0.1 3,-0.5 0.801 115.0 -65.8 25.9 56.7 -1.4 -2.4 -12.7 4 4 A E T 3 - 0 0 119 1,-0.2 -1,-0.2 2,-0.1 5,-0.2 -0.604 57.2 -98.1 104.7 -61.7 0.7 -0.9 -9.8 5 5 A L S <> S- 0 0 119 -2,-0.6 4,-0.8 -3,-0.6 -1,-0.2 0.732 80.2 -75.4 41.0 86.0 -0.1 -2.9 -6.8 6 6 A D T 4 S- 0 0 87 -3,-0.5 4,-0.2 3,-0.2 -2,-0.1 0.254 96.8 -23.3 -24.4 93.5 -2.6 0.1 -6.1 7 7 A K T 4 S- 0 0 131 2,-0.1 -1,-0.2 4,-0.0 -3,-0.0 0.976 134.3 -22.6 85.2 65.3 -1.0 3.3 -4.9 8 8 A W T 4 S- 0 0 152 -3,-0.2 4,-0.2 3,-0.1 -2,-0.1 0.996 127.7 -46.4 56.3 76.8 2.4 2.4 -3.3 9 9 A A S < S- 0 0 69 -4,-0.8 2,-0.3 -5,-0.2 -3,-0.2 0.859 108.3 -55.6 31.8 79.0 1.6 -1.4 -2.5 10 10 A S S S- 0 0 79 -4,-0.2 2,-0.2 -5,-0.1 0, 0.0 -0.513 99.2 -74.6 51.5-112.1 -2.0 -0.7 -0.9 11 11 A L - 0 0 87 -2,-0.3 2,-0.2 0, 0.0 -2,-0.1 -0.887 35.9-109.1-160.7 146.5 -0.7 1.9 1.7 12 12 A W 0 0 218 -2,-0.2 -2,-0.0 -4,-0.2 -3,-0.0 -0.496 360.0 360.0 -63.2 137.8 1.2 1.8 5.1 13 13 A N 0 0 205 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.355 360.0 360.0-148.7 360.0 -1.2 2.6 8.1