==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 19-MAY-10 3N32 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.SILIQI,R.CALIANDRO,G.FALINI,S.FERMANI,G.NATILE,F.ARNESANO, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4852.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 69.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 60 0, 0.0 16,-2.5 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 121.2 -3.7 27.6 14.0 2 2 A Q E +A 16 0A 73 14,-0.2 62,-3.6 12,-0.0 63,-0.4 -0.694 360.0 170.5 -78.0 131.1 -3.3 23.9 14.6 3 3 A I E -A 15 0A 0 12,-2.1 12,-2.8 -2,-0.4 2,-0.4 -0.950 23.3-135.6-132.2 165.1 0.3 22.6 14.2 4 4 A F E -Ab 14 66A 47 61,-2.4 63,-2.4 -2,-0.3 2,-0.5 -0.883 6.1-156.2-115.9 145.9 1.9 19.2 15.0 5 5 A V E -Ab 13 67A 1 8,-2.6 8,-2.1 -2,-0.4 2,-0.5 -0.976 12.9-158.8-121.3 119.2 5.2 18.6 16.7 6 6 A K E -Ab 12 68A 95 61,-2.8 63,-3.3 -2,-0.5 6,-0.2 -0.846 2.7-151.3-101.9 129.7 6.8 15.3 15.9 7 7 A T > - 0 0 18 4,-2.6 3,-1.2 -2,-0.5 63,-0.1 -0.397 30.9-110.1 -86.3 166.9 9.5 13.7 18.2 8 8 A L T 3 S+ 0 0 136 61,-0.4 -1,-0.1 1,-0.3 62,-0.1 0.682 121.0 61.6 -71.6 -17.7 12.2 11.4 16.9 9 9 A T T 3 S- 0 0 131 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.557 121.3-112.7 -82.5 -8.9 10.4 8.6 18.8 10 10 A G < + 0 0 42 -3,-1.2 2,-0.1 1,-0.3 -2,-0.1 0.357 69.9 139.2 97.4 -4.7 7.5 9.3 16.5 11 11 A K - 0 0 111 -5,-0.1 -4,-2.6 1,-0.0 2,-0.4 -0.467 37.2-155.1 -67.7 139.7 5.0 10.7 19.0 12 12 A T E -A 6 0A 74 -6,-0.2 2,-0.4 -2,-0.1 -6,-0.2 -0.968 8.1-167.8-116.2 135.8 3.1 13.7 17.6 13 13 A I E -A 5 0A 17 -8,-2.1 -8,-2.6 -2,-0.4 2,-0.5 -0.916 16.9-132.5-114.7 153.5 1.5 16.3 19.8 14 14 A T E -A 4 0A 61 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.879 23.3-173.5-106.9 130.9 -0.9 18.9 18.6 15 15 A L E -A 3 0A 5 -12,-2.8 -12,-2.1 -2,-0.5 2,-0.5 -0.831 20.8-139.8-117.1 158.4 -0.5 22.6 19.5 16 16 A E E +A 2 0A 146 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.987 41.3 151.1-117.0 122.3 -2.6 25.6 19.0 17 17 A V - 0 0 3 -16,-2.5 -2,-0.0 -2,-0.5 9,-0.0 -0.853 34.1-130.1-143.6 167.6 -0.5 28.6 18.0 18 18 A E > - 0 0 115 -2,-0.3 3,-1.7 4,-0.1 38,-0.4 -0.890 29.8-111.2-126.6 162.1 -0.6 31.9 16.1 19 19 A P T 3 S+ 0 0 65 0, 0.0 38,-2.0 0, 0.0 39,-0.3 0.715 118.3 59.1 -60.3 -24.5 1.6 33.5 13.4 20 20 A S T 3 S+ 0 0 79 36,-0.1 2,-0.1 35,-0.1 -3,-0.0 0.601 83.3 105.2 -80.0 -17.1 2.5 36.1 16.1 21 21 A D < - 0 0 26 -3,-1.7 35,-2.2 34,-0.1 36,-0.3 -0.396 67.8-132.2 -64.6 138.1 3.9 33.5 18.5 22 22 A T B > -E 55 0B 32 33,-0.3 4,-1.8 -2,-0.1 33,-0.3 -0.531 22.7-112.3 -84.2 159.2 7.7 33.2 18.8 23 23 A I H > S+ 0 0 0 31,-2.8 4,-2.3 28,-0.5 5,-0.2 0.875 120.5 61.1 -55.3 -37.8 9.6 30.0 18.6 24 24 A E H > S+ 0 0 126 28,-2.3 4,-1.8 30,-0.3 -1,-0.2 0.926 104.1 49.5 -52.2 -45.7 10.4 30.5 22.3 25 25 A N H > S+ 0 0 58 27,-0.3 4,-2.6 -3,-0.3 -1,-0.2 0.898 107.8 52.4 -61.6 -44.0 6.6 30.4 23.0 26 26 A V H X S+ 0 0 0 -4,-1.8 4,-2.5 1,-0.2 -1,-0.2 0.901 108.3 50.8 -60.8 -42.0 6.2 27.2 21.0 27 27 A K H X S+ 0 0 10 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.879 109.3 52.0 -63.0 -36.9 8.9 25.5 23.0 28 28 A A H X S+ 0 0 47 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.940 109.3 49.4 -63.6 -47.3 7.1 26.7 26.2 29 29 A K H X S+ 0 0 75 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.888 110.3 51.3 -58.8 -40.9 3.9 25.2 24.9 30 30 A I H X>S+ 0 0 1 -4,-2.5 4,-2.9 2,-0.2 5,-0.8 0.866 107.7 52.0 -65.3 -39.3 5.8 21.9 24.2 31 31 A Q H X5S+ 0 0 86 -4,-2.4 4,-1.6 3,-0.2 -2,-0.2 0.942 108.4 52.2 -62.3 -44.7 7.2 21.8 27.7 32 32 A D H <5S+ 0 0 131 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.948 121.1 30.9 -53.7 -51.5 3.7 22.3 29.1 33 33 A K H <5S+ 0 0 129 -4,-2.1 -2,-0.2 -5,-0.1 -1,-0.2 0.883 136.4 22.3 -78.4 -39.7 2.3 19.3 27.1 34 34 A E H <5S- 0 0 68 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.2 0.698 94.4-125.9-106.5 -25.8 5.3 17.0 26.8 35 35 A G << + 0 0 52 -4,-1.6 -4,-0.2 -5,-0.8 -3,-0.1 0.457 56.5 143.5 93.9 3.7 7.5 18.0 29.7 36 36 A I - 0 0 24 -6,-0.5 -1,-0.3 -9,-0.1 -2,-0.1 -0.671 54.6-118.5 -83.1 122.3 10.7 18.7 27.8 37 37 A P > - 0 0 42 0, 0.0 3,-1.6 0, 0.0 4,-0.5 -0.288 21.5-126.9 -56.2 135.7 12.8 21.6 29.0 38 38 A P G > S+ 0 0 46 0, 0.0 3,-1.3 0, 0.0 -10,-0.1 0.798 105.5 65.2 -58.0 -32.1 13.1 24.3 26.3 39 39 A D G 3 S+ 0 0 91 1,-0.3 33,-0.1 32,-0.0 -3,-0.0 0.792 103.6 47.8 -64.9 -24.7 16.9 24.4 26.5 40 40 A Q G < S+ 0 0 68 -3,-1.6 32,-2.4 31,-0.1 2,-0.3 0.553 93.5 101.7 -86.7 -11.9 16.9 20.8 25.2 41 41 A Q E < +C 71 0A 0 -3,-1.3 2,-0.4 -4,-0.5 30,-0.2 -0.609 43.6 178.9 -85.6 133.1 14.5 21.5 22.4 42 42 A R E -C 70 0A 88 28,-1.8 28,-3.1 -2,-0.3 2,-0.4 -0.976 13.5-159.6-128.5 115.1 15.7 21.9 18.8 43 43 A L E -C 69 0A 0 -2,-0.4 7,-2.7 7,-0.3 2,-0.4 -0.802 5.5-168.0-100.7 138.9 12.9 22.5 16.2 44 44 A I E +CD 68 49A 29 24,-2.0 24,-3.0 -2,-0.4 2,-0.3 -0.982 12.9 162.2-124.3 136.9 13.3 21.9 12.5 45 45 A F E > + D 0 48A 36 3,-2.2 3,-0.7 -2,-0.4 22,-0.1 -0.964 70.0 0.1-150.9 136.8 10.9 23.0 9.6 46 46 A A T 3 S- 0 0 58 -2,-0.3 3,-0.1 1,-0.3 21,-0.0 0.873 130.9 -58.1 54.5 37.0 11.5 23.3 5.9 47 47 A G T 3 S+ 0 0 77 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.844 115.1 114.6 62.6 38.4 15.0 22.1 6.5 48 48 A K E < -D 45 0A 106 -3,-0.7 -3,-2.2 11,-0.0 2,-0.4 -1.000 67.6-127.5-139.7 132.6 15.8 25.0 8.9 49 49 A Q E -D 44 0A 108 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.721 41.8-117.7 -77.8 133.4 16.6 24.9 12.6 50 50 A L - 0 0 4 -7,-2.7 2,-0.4 -2,-0.4 -7,-0.3 -0.601 16.8-130.4 -88.9 132.8 14.2 27.4 14.1 51 51 A E > - 0 0 116 -2,-0.3 3,-1.6 1,-0.1 -28,-0.5 -0.628 9.9-138.5 -84.7 124.7 15.3 30.6 15.9 52 52 A D T 3 S+ 0 0 74 -2,-0.4 -28,-2.3 1,-0.3 -27,-0.3 0.787 101.5 52.3 -48.5 -37.8 13.8 31.2 19.4 53 53 A G T 3 S+ 0 0 40 -30,-0.2 -1,-0.3 -31,-0.1 -3,-0.0 0.786 94.7 85.3 -73.9 -27.9 13.4 34.9 18.7 54 54 A R S < S- 0 0 114 -3,-1.6 -31,-2.8 -32,-0.1 -30,-0.3 -0.228 74.6-120.0 -80.2 163.1 11.6 34.6 15.4 55 55 A T B >> -E 22 0B 31 -33,-0.3 4,-0.8 -32,-0.1 3,-0.7 -0.599 24.1-113.6 -96.0 159.7 7.8 34.2 14.9 56 56 A L G >4>S+ 0 0 0 -35,-2.2 5,-2.1 -38,-0.4 3,-0.9 0.865 119.2 62.2 -58.2 -32.7 6.1 31.3 13.2 57 57 A S G >45S+ 0 0 72 -38,-2.0 3,-1.3 -36,-0.3 -1,-0.2 0.837 93.8 59.8 -59.4 -38.6 5.1 33.9 10.6 58 58 A D G <45S+ 0 0 96 -3,-0.7 -1,-0.3 -39,-0.3 -2,-0.2 0.763 111.1 42.0 -60.3 -29.0 8.8 34.5 9.8 59 59 A Y G <<5S- 0 0 31 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.344 111.0-120.7 -99.9 3.7 9.0 30.9 8.7 60 60 A N T < 5 + 0 0 103 -3,-1.3 2,-0.7 -4,-0.2 -3,-0.2 0.900 47.1 173.5 53.7 41.4 5.7 30.8 6.9 61 61 A I < - 0 0 6 -5,-2.1 -1,-0.2 -6,-0.1 2,-0.2 -0.751 10.1-179.9 -79.4 115.1 4.5 28.1 9.2 62 62 A Q > - 0 0 119 -2,-0.7 3,-1.9 1,-0.2 -44,-0.0 -0.491 35.9 -46.0-111.9 178.9 0.8 27.6 8.4 63 63 A K T 3 S+ 0 0 144 1,-0.2 -1,-0.2 -2,-0.2 -60,-0.2 -0.149 122.4 7.0 -44.2 131.4 -2.1 25.4 9.5 64 64 A E T 3 S+ 0 0 91 -62,-3.6 -1,-0.2 1,-0.2 -61,-0.2 0.471 87.1 151.0 75.0 2.2 -1.3 21.7 9.9 65 65 A S < - 0 0 22 -3,-1.9 -61,-2.4 -63,-0.4 2,-0.5 -0.278 40.5-134.1 -52.4 151.5 2.4 22.1 9.4 66 66 A T E -b 4 0A 56 -63,-0.2 2,-0.4 -61,-0.1 -61,-0.2 -0.964 15.4-162.5-112.6 128.3 4.6 19.6 11.2 67 67 A L E -b 5 0A 0 -63,-2.4 -61,-2.8 -2,-0.5 2,-0.6 -0.902 17.7-130.9-103.7 143.0 7.7 20.7 13.1 68 68 A H E -bC 6 44A 87 -24,-3.0 -24,-2.0 -2,-0.4 2,-0.6 -0.826 13.4-147.8 -98.7 125.6 10.4 18.2 13.9 69 69 A L E + C 0 43A 4 -63,-3.3 2,-0.4 -2,-0.6 -61,-0.4 -0.795 18.9 175.3 -93.3 121.5 11.6 18.0 17.5 70 70 A V E - C 0 42A 31 -28,-3.1 -28,-1.8 -2,-0.6 2,-0.4 -0.980 25.9-131.5-117.8 137.6 15.2 17.0 18.0 71 71 A L E - C 0 41A 76 -2,-0.4 2,-0.6 -30,-0.2 -30,-0.2 -0.747 14.3-134.5 -93.4 137.2 16.8 17.0 21.5 72 72 A R - 0 0 87 -32,-2.4 2,-0.5 -2,-0.4 -1,-0.0 -0.795 23.8-122.2 -95.0 121.7 20.1 18.7 22.0 73 73 A L - 0 0 144 -2,-0.6 2,-0.8 1,-0.1 3,-0.1 -0.503 21.7-164.4 -74.2 113.2 22.5 16.7 24.1 74 74 A R S S+ 0 0 200 -2,-0.5 -1,-0.1 1,-0.2 -34,-0.0 -0.870 75.4 18.8 -94.7 107.8 23.7 18.5 27.2 75 75 A G 0 0 67 -2,-0.8 -1,-0.2 0, 0.0 0, 0.0 0.736 360.0 360.0 93.6 96.4 26.7 16.5 28.5 76 76 A G 0 0 144 -3,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.188 360.0 360.0 -52.2 360.0 28.2 14.3 25.9