==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 20-NOV-02 1N88 . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L23; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR A.OHMAN,A.RAK,M.DONTSOVA,M.B.GARBER,T.HARD . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6446.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 65.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 191 0, 0.0 2,-2.1 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0 102.8 -7.2 -17.6 7.3 2 2 A K + 0 0 140 3,-0.1 43,-0.1 2,-0.1 39,-0.0 -0.382 360.0 103.8 -85.6 65.7 -5.0 -15.9 4.6 3 3 A T S >S- 0 0 37 -2,-2.1 5,-0.8 42,-0.1 40,-0.2 0.496 100.1 -19.2-108.6-104.9 -7.8 -13.5 3.7 4 4 A A T 5S+ 0 0 26 38,-0.2 -2,-0.1 3,-0.1 38,-0.1 0.574 118.0 97.0 -84.1 -5.1 -7.8 -9.9 4.9 5 5 A Y T 5S- 0 0 45 -4,-0.4 -3,-0.1 37,-0.1 37,-0.0 0.597 101.6 -13.5 -52.8-139.9 -5.2 -11.1 7.6 6 6 A D T 5S+ 0 0 89 24,-0.1 25,-1.8 2,-0.1 3,-0.3 0.840 137.9 52.7 -30.0 -59.0 -1.5 -10.6 6.9 7 7 A V T 5S+ 0 0 0 1,-0.2 24,-1.3 23,-0.2 2,-1.0 0.846 125.7 3.9 -51.4-109.1 -2.1 -9.8 3.2 8 8 A I E > - 0 0 46 -2,-0.7 4,-4.5 1,-0.2 3,-2.0 -0.995 69.2 -98.9-155.4 157.4 -8.7 8.8 0.7 15 15 A E H 3>>S+ 0 0 151 -2,-0.3 4,-1.8 1,-0.3 5,-0.6 0.944 126.3 48.4 -43.5 -61.2 -9.5 11.2 -2.2 16 16 A K H 345S+ 0 0 149 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.744 123.0 38.2 -54.7 -17.7 -7.1 9.3 -4.5 17 17 A A H <>5S+ 0 0 2 -3,-2.0 4,-4.3 3,-0.2 5,-0.3 0.862 116.4 45.9 -99.4 -52.2 -8.9 6.2 -3.3 18 18 A Y H X5S+ 0 0 65 -4,-4.5 4,-1.3 1,-0.3 -3,-0.2 0.983 118.9 41.8 -56.5 -58.1 -12.5 7.3 -3.0 19 19 A A H <5S+ 0 0 64 -4,-1.8 -1,-0.3 -5,-0.3 -3,-0.2 0.715 117.3 53.1 -63.7 -12.8 -12.6 9.0 -6.4 20 20 A G H >>XS+ 0 0 26 -5,-0.6 3,-2.8 -6,-0.4 5,-0.9 0.909 97.4 59.6 -86.3 -47.2 -10.6 5.9 -7.5 21 21 A F H ><5S+ 0 0 18 -4,-4.3 3,-1.5 1,-0.3 -2,-0.2 0.843 83.5 90.2 -47.9 -28.4 -13.1 3.4 -6.2 22 22 A A T 3<5S+ 0 0 83 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.829 94.7 35.7 -38.3 -38.3 -15.3 5.3 -8.6 23 23 A E T <45S- 0 0 157 -3,-2.8 -1,-0.3 -4,-0.1 -2,-0.2 0.670 129.9 -94.2 -93.1 -17.9 -14.1 2.7 -11.2 24 24 A G T <<5S+ 0 0 5 -3,-1.5 59,-0.6 -4,-0.7 2,-0.3 0.433 78.9 139.2 118.1 4.5 -14.0 -0.2 -8.8 25 25 A K E < - B 0 82A 58 -5,-0.9 2,-0.5 57,-0.2 -1,-0.3 -0.619 33.7-162.9 -81.7 135.7 -10.3 -0.0 -7.8 26 26 A Y E - B 0 81A 5 55,-2.0 55,-2.9 -2,-0.3 2,-0.2 -0.896 6.4-155.5-127.1 111.2 -9.6 -0.6 -4.1 27 27 A T E - B 0 80A 7 -2,-0.5 -15,-1.6 53,-0.3 2,-0.3 -0.551 22.7-177.6 -78.0 140.0 -6.3 0.4 -2.5 28 28 A F E -AB 11 79A 0 51,-0.7 51,-2.2 -2,-0.2 2,-0.6 -0.935 31.2-115.5-137.5 164.3 -5.5 -1.6 0.7 29 29 A W E + B 0 78A 83 -19,-2.2 -20,-2.5 -2,-0.3 2,-0.3 -0.857 48.1 162.8 -99.3 122.6 -2.9 -1.8 3.4 30 30 A V E -AB 8 77A 0 47,-3.3 47,-1.4 -2,-0.6 -22,-0.2 -0.980 40.8 -89.9-144.0 156.7 -1.1 -5.1 3.2 31 31 A H > - 0 0 82 -25,-1.8 2,-2.6 -24,-1.3 3,-1.0 -0.253 48.5-101.6 -62.4 151.7 2.1 -6.8 4.4 32 32 A P T 3 S+ 0 0 46 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.426 114.6 42.7 -73.4 71.1 5.2 -6.6 2.3 33 33 A K T 3 + 0 0 91 -2,-2.6 2,-0.6 1,-0.1 5,-0.1 0.190 63.3 128.5 179.3 -34.2 4.8 -10.1 0.8 34 34 A A < - 0 0 0 -3,-1.0 5,-0.3 -28,-0.1 -1,-0.1 -0.148 66.1-125.9 -44.3 92.5 1.1 -10.7 -0.0 35 35 A T > - 0 0 86 -2,-0.6 4,-2.4 3,-0.1 5,-0.3 -0.056 21.4-107.1 -42.7 144.1 1.8 -11.9 -3.6 36 36 A K H > S+ 0 0 97 1,-0.3 4,-1.1 2,-0.2 3,-0.2 0.924 125.6 44.1 -42.5 -52.9 -0.2 -9.9 -6.1 37 37 A T H > S+ 0 0 97 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.899 107.2 61.3 -62.4 -36.5 -2.4 -13.0 -6.7 38 38 A E H > S+ 0 0 35 1,-0.3 4,-2.2 -3,-0.2 3,-0.4 0.939 98.6 55.6 -56.5 -44.1 -2.5 -13.5 -2.9 39 39 A I H X S+ 0 0 0 -4,-2.4 4,-1.8 -5,-0.3 5,-0.3 0.879 100.5 61.6 -57.6 -32.6 -4.2 -10.1 -2.5 40 40 A K H X S+ 0 0 74 -4,-1.1 4,-1.8 -3,-0.5 -1,-0.2 0.943 107.8 41.7 -59.3 -45.8 -6.8 -11.4 -4.9 41 41 A N H X S+ 0 0 83 -4,-1.4 4,-1.9 -3,-0.4 5,-0.3 0.855 106.3 63.8 -71.8 -34.0 -7.8 -14.2 -2.5 42 42 A A H X S+ 0 0 0 -4,-2.2 4,-1.5 1,-0.2 5,-0.3 0.963 113.9 31.9 -57.5 -50.2 -7.6 -11.9 0.6 43 43 A V H X>S+ 0 0 0 -4,-1.8 4,-1.5 1,-0.2 5,-1.2 0.868 113.4 62.2 -76.2 -34.1 -10.5 -9.7 -0.6 44 44 A E H <5S+ 0 0 93 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.848 107.0 46.5 -60.9 -29.8 -12.3 -12.5 -2.4 45 45 A T H <5S+ 0 0 53 -4,-1.9 -1,-0.2 -5,-0.1 -2,-0.2 0.932 129.4 21.1 -78.5 -46.5 -12.7 -14.3 1.0 46 46 A A H <5S+ 0 0 48 -4,-1.5 -3,-0.2 -5,-0.3 -2,-0.2 0.934 134.2 36.9 -87.5 -55.0 -13.9 -11.3 3.0 47 47 A F T <5S- 0 0 42 -4,-1.5 -3,-0.2 -5,-0.3 43,-0.2 0.703 89.5-154.0 -71.5 -14.7 -15.2 -8.9 0.3 48 48 A K < + 0 0 166 -5,-1.2 -4,-0.2 1,-0.1 2,-0.1 0.903 50.5 125.8 42.5 47.0 -16.5 -12.0 -1.6 49 49 A V - 0 0 22 -6,-0.4 2,-0.6 38,-0.1 -1,-0.1 -0.410 68.9 -90.6-116.9-163.9 -16.2 -10.1 -4.8 50 50 A K - 0 0 106 -2,-0.1 34,-0.9 34,-0.1 2,-0.6 -0.913 30.8-149.1-118.1 110.3 -14.5 -10.6 -8.2 51 51 A V E +C 83 0A 6 -2,-0.6 32,-0.3 32,-0.2 3,-0.1 -0.634 22.1 170.6 -78.6 119.7 -11.0 -9.2 -8.5 52 52 A V E S+ 0 0 62 30,-4.3 31,-0.2 -2,-0.6 2,-0.2 0.326 72.2 0.8-110.0 7.0 -10.3 -8.2 -12.1 53 53 A K E -C 82 0A 129 29,-0.9 29,-3.6 31,-0.0 2,-0.5 -0.529 60.0-165.1 169.7 119.1 -7.0 -6.4 -11.4 54 54 A V E +C 81 0A 15 27,-0.3 2,-0.5 -2,-0.2 27,-0.3 -0.948 8.3 179.1-121.1 120.8 -4.9 -5.9 -8.3 55 55 A N E +C 80 0A 81 25,-4.1 25,-4.2 -2,-0.5 2,-0.3 -0.945 7.2 179.2-121.6 115.9 -2.0 -3.3 -8.2 56 56 A T E -C 79 0A 21 -2,-0.5 2,-0.3 23,-0.3 23,-0.3 -0.865 3.1-176.6-116.3 150.6 -0.1 -2.9 -4.9 57 57 A L E -C 78 0A 84 21,-1.7 21,-4.9 -2,-0.3 2,-0.2 -0.978 36.9 -91.2-141.5 154.9 2.8 -0.6 -4.2 58 58 A H E -C 77 0A 100 -2,-0.3 2,-0.4 19,-0.3 19,-0.3 -0.442 41.9-160.6 -67.4 134.0 5.1 0.0 -1.1 59 59 A V E -C 76 0A 18 17,-4.1 17,-0.8 -2,-0.2 2,-0.3 -0.954 6.0-168.1-120.0 133.2 3.8 2.7 1.2 60 60 A R - 0 0 62 -2,-0.4 13,-0.1 1,-0.1 4,-0.1 -0.877 37.2 -85.3-118.5 151.9 5.8 4.7 3.7 61 61 A G - 0 0 38 -2,-0.3 -1,-0.1 11,-0.2 3,-0.1 -0.032 52.7 -99.2 -46.3 156.8 4.7 7.0 6.6 62 62 A K S S+ 0 0 192 1,-0.3 -2,-0.1 2,-0.1 -1,-0.0 0.947 121.5 14.4 -45.1 -79.4 4.1 10.6 5.4 63 63 A K S S- 0 0 137 1,-0.1 -1,-0.3 9,-0.0 10,-0.2 0.451 94.8-143.3 -78.5 4.0 7.4 12.1 6.6 64 64 A K S S+ 0 0 92 1,-0.2 9,-1.6 8,-0.2 7,-0.1 0.817 91.5 48.2 38.6 32.9 8.7 8.5 7.0 65 65 A R S >S- 0 0 136 7,-0.3 5,-0.6 5,-0.1 7,-0.4 0.282 79.1-160.2-160.6 -49.5 10.5 9.9 10.1 66 66 A L T 5 - 0 0 104 5,-0.1 6,-0.1 3,-0.1 4,-0.1 0.865 66.5 -32.3 53.6 104.4 8.3 12.0 12.3 67 67 A G T 5S- 0 0 66 2,-0.1 3,-0.4 4,-0.1 4,-0.0 0.084 118.5 -22.0 44.7-169.4 10.5 14.2 14.5 68 68 A R T 5S- 0 0 229 1,-0.2 4,-0.2 2,-0.1 2,-0.1 0.199 122.3 -27.3 -51.8-173.1 13.9 12.7 15.4 69 69 A Y T 5S+ 0 0 194 1,-0.2 -1,-0.2 2,-0.1 -3,-0.1 -0.133 93.2 126.3 -42.3 102.8 14.3 8.9 15.3 70 70 A L S - 0 0 16 -34,-0.9 3,-1.0 -2,-0.3 -1,-0.2 0.066 58.6 -69.4 -57.3 178.8 -15.3 -6.4 -13.0 85 85 A P T 3 S+ 0 0 124 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.419 120.6 28.9 -72.7 145.2 -18.3 -4.4 -14.2 86 86 A G T 3 S+ 0 0 71 1,-0.4 2,-0.1 -2,-0.1 -2,-0.1 0.218 103.5 100.4 89.8 -18.4 -21.6 -4.8 -12.2 87 87 A Q < + 0 0 62 -3,-1.0 -1,-0.4 -37,-0.1 2,-0.1 -0.458 43.4 172.1 -94.6 171.6 -19.6 -5.5 -9.1 88 88 A K - 0 0 134 -2,-0.1 2,-0.3 -3,-0.1 -6,-0.0 -0.508 31.5-128.7 179.7 105.5 -18.7 -3.2 -6.2 89 89 A I >> - 0 0 4 1,-0.2 4,-1.2 -65,-0.2 3,-0.7 -0.436 15.3-161.6 -63.1 118.6 -17.1 -3.9 -2.8 90 90 A E H 3> S+ 0 0 150 -2,-0.3 4,-2.0 1,-0.2 -1,-0.2 0.674 77.3 84.9 -76.6 -14.7 -19.4 -2.4 -0.2 91 91 A A H 34 S+ 0 0 18 1,-0.2 -1,-0.2 2,-0.2 -2,-0.1 0.872 108.4 21.1 -56.2 -34.7 -16.5 -2.5 2.4 92 92 A L H <4 S+ 0 0 0 -3,-0.7 3,-0.5 2,-0.1 -1,-0.2 0.678 116.9 66.0-106.2 -23.5 -15.2 0.8 1.1 93 93 A E H < S+ 0 0 113 -4,-1.2 3,-0.4 1,-0.2 -2,-0.2 0.935 112.7 33.3 -65.7 -43.2 -18.4 2.1 -0.6 94 94 A G S < S+ 0 0 65 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.1 0.348 96.9 91.3 -93.3 8.3 -20.3 2.4 2.7 95 95 A L 0 0 78 -3,-0.5 -1,-0.2 -5,-0.2 -2,-0.1 0.125 360.0 360.0 -88.6 24.9 -17.0 3.3 4.5 96 96 A I 0 0 162 -3,-0.4 -2,-0.1 -78,-0.0 -1,-0.1 0.775 360.0 360.0-112.2 360.0 -17.7 7.1 3.9