==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 14-MAY-98 1NC8 . COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 2; . AUTHOR Y.KODERA,K.SATO,T.TSUKAHARA,H.KOMATSU,T.MAEDA,T.KOHNO . 29 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2965.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 37.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 6.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 144 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -66.2 11.4 -0.5 -13.0 2 2 A Q - 0 0 157 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.741 360.0-155.3 -81.3 -21.0 9.7 -3.8 -11.8 3 3 A Q - 0 0 150 1,-0.2 2,-0.9 2,-0.0 0, 0.0 0.950 15.8-177.3 44.6 76.2 9.4 -2.5 -8.2 4 4 A R + 0 0 177 2,-0.1 2,-0.3 1,-0.0 -1,-0.2 -0.728 26.1 133.5-106.1 86.4 9.3 -6.0 -6.5 5 5 A K - 0 0 158 -2,-0.9 11,-0.2 2,-0.0 -1,-0.0 -0.729 49.1-141.1-136.0 90.1 8.9 -5.2 -2.8 6 6 A V - 0 0 91 -2,-0.3 2,-0.4 9,-0.1 -2,-0.1 -0.223 31.7-178.7 -48.1 123.2 6.3 -7.3 -0.9 7 7 A I - 0 0 75 11,-0.0 9,-1.8 2,-0.0 2,-1.5 -0.980 32.5-134.7-135.0 130.7 4.7 -4.7 1.5 8 8 A R B -A 15 0A 188 -2,-0.4 7,-0.3 7,-0.3 10,-0.1 -0.611 35.4-129.8 -80.4 92.5 2.0 -5.2 4.1 9 9 A a > - 0 0 0 5,-1.6 4,-0.9 -2,-1.5 5,-0.3 -0.127 8.8-148.3 -42.7 126.5 -0.1 -2.0 3.3 10 10 A W T 4 S+ 0 0 134 1,-0.2 -1,-0.2 3,-0.2 8,-0.1 0.815 85.1 83.0 -71.6 -24.6 -0.6 -0.3 6.7 11 11 A N T 4 S- 0 0 17 1,-0.2 -1,-0.2 17,-0.1 15,-0.1 0.931 123.5 -13.5 -41.0 -76.9 -4.0 1.0 5.4 12 12 A C T 4 S- 0 0 64 2,-0.1 -1,-0.2 13,-0.1 -2,-0.1 0.772 100.2-103.4-101.0 -31.6 -5.9 -2.2 6.2 13 13 A G S < S+ 0 0 33 -4,-0.9 2,-0.2 1,-0.3 -3,-0.2 0.578 72.3 136.0 118.1 18.4 -3.0 -4.6 6.9 14 14 A K - 0 0 146 -5,-0.3 -5,-1.6 3,-0.1 2,-0.4 -0.608 47.3-130.9 -95.0 158.6 -2.9 -6.7 3.6 15 15 A E B S+A 8 0A 120 -7,-0.3 -7,-0.3 -2,-0.2 3,-0.1 -0.901 79.4 55.6-112.1 136.2 0.3 -7.6 1.8 16 16 A G S S+ 0 0 57 -9,-1.8 2,-0.3 -2,-0.4 -1,-0.2 0.359 98.2 59.2 127.3 -0.0 0.8 -7.1 -2.0 17 17 A H S S- 0 0 46 -10,-1.1 -8,-0.5 -3,-0.3 -1,-0.2 -0.976 74.6-123.1-157.3 140.4 0.0 -3.3 -2.3 18 18 A S >> - 0 0 35 -2,-0.3 4,-2.0 -9,-0.1 3,-1.0 -0.297 42.3 -93.6 -79.1 168.8 1.4 -0.1 -0.8 19 19 A A G >4 S+ 0 0 14 1,-0.3 3,-0.7 2,-0.2 8,-0.1 0.938 126.9 53.3 -48.0 -54.5 -0.7 2.4 1.2 20 20 A R G 34 S+ 0 0 187 1,-0.3 -1,-0.3 9,-0.2 9,-0.2 0.848 113.3 45.5 -53.5 -30.6 -1.4 4.5 -2.0 21 21 A Q G <4 S+ 0 0 137 -3,-1.0 2,-1.2 8,-0.2 -1,-0.3 0.757 91.4 90.9 -85.0 -23.4 -2.6 1.3 -3.6 22 22 A a << + 0 0 5 -4,-2.0 -1,-0.1 -3,-0.7 -5,-0.0 -0.566 51.7 177.7 -74.4 98.3 -4.6 0.2 -0.6 23 23 A R + 0 0 184 -2,-1.2 -1,-0.2 1,-0.1 6,-0.1 0.229 56.8 91.5 -87.4 18.1 -8.0 1.8 -1.4 24 24 A A S S+ 0 0 62 1,-0.1 2,-0.2 3,-0.1 -1,-0.1 0.977 86.3 34.2 -74.9 -74.7 -9.6 0.4 1.8 25 25 A P S S- 0 0 33 0, 0.0 2,-1.2 0, 0.0 -13,-0.1 -0.484 90.1-117.7 -77.8 149.2 -9.1 3.1 4.4 26 26 A R S S+ 0 0 199 -2,-0.2 -3,-0.1 2,-0.1 2,-0.0 -0.691 78.8 94.8 -91.0 95.4 -9.2 6.7 3.2 27 27 A R S S- 0 0 175 -2,-1.2 -1,-0.1 2,-0.4 -3,-0.1 -0.343 106.5 -32.2-178.8 85.7 -5.8 8.2 3.9 28 28 A Q 0 0 143 -8,-0.1 -6,-0.2 -5,-0.0 -7,-0.1 0.977 360.0 360.0 59.6 54.5 -3.1 8.1 1.1 29 29 A G 0 0 34 -9,-0.2 -2,-0.4 -8,-0.1 -8,-0.2 -0.257 360.0 360.0 172.7 360.0 -4.4 4.9 -0.4