==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION PROTEIN 23-MAR-95 1NCG . COMPND 2 MOLECULE: N-CADHERIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR L.SHAPIRO,A.M.FANNON,P.D.KWONG,A.THOMPSON,M.S.LEHMANN, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6220.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 53.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 25.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 124 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 29.4 16.8 39.0 -1.2 2 2 A W - 0 0 245 1,-0.1 2,-0.4 0, 0.0 0, 0.0 -0.522 360.0-136.3 -68.9 131.5 16.1 35.5 -2.4 3 3 A V - 0 0 121 -2,-0.2 91,-0.1 89,-0.1 -1,-0.1 -0.787 17.2-121.4 -92.8 132.6 13.4 34.0 -0.1 4 4 A I - 0 0 50 -2,-0.4 91,-0.2 89,-0.4 3,-0.1 -0.510 35.8-107.0 -71.5 137.0 14.1 30.4 0.9 5 5 A P - 0 0 98 0, 0.0 90,-0.1 0, 0.0 -1,-0.1 -0.497 40.3 -99.9 -65.0 145.5 11.2 28.2 -0.2 6 6 A P - 0 0 62 0, 0.0 2,-0.3 0, 0.0 90,-0.2 -0.201 32.9-128.7 -64.0 146.9 8.9 27.0 2.6 7 7 A I E -a 96 0A 35 88,-3.1 90,-2.5 -3,-0.1 2,-0.5 -0.665 15.6-146.0 -93.7 155.5 9.5 23.5 3.8 8 8 A N E -a 97 0A 93 -2,-0.3 90,-0.2 88,-0.2 88,-0.0 -0.994 18.2-178.2-125.8 120.9 6.5 21.2 4.0 9 9 A L E -a 98 0A 22 88,-3.5 90,-2.9 -2,-0.5 2,-0.1 -0.980 22.6-130.3-122.3 128.8 6.4 18.7 6.9 10 10 A P - 0 0 80 0, 0.0 3,-0.4 0, 0.0 56,-0.4 -0.501 27.5-116.5 -76.8 150.8 3.7 16.1 7.4 11 11 A E S S+ 0 0 43 88,-2.0 56,-0.2 1,-0.2 88,-0.0 -0.089 91.4 39.2 -68.6 175.8 2.2 15.9 10.9 12 12 A N S S+ 0 0 105 54,-2.3 -1,-0.2 1,-0.2 55,-0.1 0.718 73.2 177.9 49.0 34.1 2.5 12.7 12.9 13 13 A S - 0 0 30 -3,-0.4 -1,-0.2 1,-0.2 6,-0.0 -0.401 27.0-147.4 -65.1 139.0 6.1 11.9 11.9 14 14 A R + 0 0 243 1,-0.3 -1,-0.2 -2,-0.1 3,-0.2 0.371 40.3 173.5 -87.7 6.8 7.3 8.8 13.7 15 15 A G - 0 0 17 1,-0.2 -1,-0.3 49,-0.1 2,-0.2 -0.427 51.2-126.0 62.4-136.2 10.8 10.3 13.7 16 16 A P - 0 0 118 0, 0.0 -1,-0.2 0, 0.0 48,-0.1 0.414 63.3-102.0 -49.1 157.5 13.1 9.0 15.2 17 17 A F S S+ 0 0 65 -2,-0.2 2,-0.2 -3,-0.2 46,-0.1 -0.957 105.7 49.2-120.6 141.1 13.6 12.3 17.0 18 18 A P S S- 0 0 89 0, 0.0 2,-0.6 0, 0.0 45,-0.2 0.393 85.6-162.5 -57.4 142.6 15.6 14.7 16.6 19 19 A Q E -E 62 0B 56 43,-3.1 43,-2.2 -2,-0.2 2,-0.1 -0.930 14.4-131.8-115.1 109.6 14.6 14.4 13.0 20 20 A E E +E 61 0B 130 -2,-0.6 41,-0.3 41,-0.3 3,-0.1 -0.347 31.6 171.1 -58.1 124.3 17.0 16.1 10.6 21 21 A L E - 0 0 41 39,-3.3 2,-0.3 1,-0.3 40,-0.2 0.846 53.8 -25.4-102.4 -65.3 15.0 18.3 8.1 22 22 A V E -E 60 0B 55 38,-1.1 38,-2.5 36,-0.1 2,-0.4 -0.995 55.6-111.7-157.8 145.8 17.3 20.4 6.0 23 23 A R E -E 59 0B 122 -2,-0.3 2,-0.5 36,-0.2 36,-0.2 -0.717 27.2-168.6 -82.0 129.2 20.8 22.0 6.2 24 24 A I + 0 0 14 34,-2.7 2,-0.3 -2,-0.4 68,-0.1 -0.839 26.2 150.8-119.7 94.9 20.6 25.8 6.4 25 25 A R - 0 0 103 -2,-0.5 2,-0.6 11,-0.0 33,-0.1 -0.762 46.7-122.3-127.1 166.8 24.1 27.2 5.9 26 26 A S > - 0 0 12 -2,-0.3 3,-3.0 1,-0.1 4,-0.3 -0.938 25.2-133.6-106.1 122.8 25.9 30.2 4.5 27 27 A G G > S+ 0 0 29 -2,-0.6 3,-1.3 1,-0.3 4,-0.2 0.802 103.6 65.4 -44.4 -34.2 28.2 29.4 1.7 28 28 A R G > S+ 0 0 116 1,-0.2 3,-1.2 2,-0.2 -1,-0.3 0.608 76.1 83.8 -68.0 -12.5 30.9 31.5 3.5 29 29 A D G X S+ 0 0 29 -3,-3.0 3,-0.9 1,-0.3 5,-0.3 0.721 79.6 69.1 -64.7 -17.7 31.1 29.2 6.5 30 30 A K G < S+ 0 0 154 -3,-1.3 -1,-0.3 -4,-0.3 -2,-0.2 0.829 113.4 25.8 -68.6 -32.7 33.6 27.1 4.5 31 31 A N G < S+ 0 0 117 -3,-1.2 -1,-0.3 1,-0.2 2,-0.2 -0.138 127.7 47.9-123.0 33.4 36.2 29.8 4.7 32 32 A L S < S- 0 0 69 -3,-0.9 -1,-0.2 2,-0.0 2,-0.1 -0.690 88.6-114.4-174.5 112.9 35.0 31.5 7.9 33 33 A S - 0 0 90 -2,-0.2 50,-0.3 -3,-0.1 2,-0.3 -0.384 46.0-176.0 -54.7 116.4 34.1 29.8 11.1 34 34 A L - 0 0 15 -5,-0.3 2,-0.4 22,-0.2 48,-0.2 -0.859 20.8-148.6-118.9 157.8 30.4 30.4 11.5 35 35 A R E -B 81 0A 56 46,-1.8 46,-2.0 -2,-0.3 2,-0.4 -0.995 14.8-151.0-126.8 129.8 27.9 29.7 14.2 36 36 A Y E +B 80 0A 10 19,-2.7 2,-0.3 -2,-0.4 44,-0.2 -0.813 19.4 165.5-106.0 143.2 24.2 29.0 13.4 37 37 A S E -B 79 0A 51 42,-1.5 42,-2.3 -2,-0.4 2,-0.3 -0.882 21.2-143.7-143.3 162.2 21.2 29.6 15.6 38 38 A V E -B 78 0A 19 -2,-0.3 2,-0.3 40,-0.2 40,-0.2 -0.989 16.3-173.6-131.3 146.2 17.4 29.7 15.0 39 39 A T E +B 77 0A 34 38,-2.3 38,-1.9 -2,-0.3 -2,-0.0 -0.873 32.8 66.8-137.2 161.1 14.9 32.0 16.5 40 40 A G S >>>S- 0 0 7 -2,-0.3 3,-2.4 36,-0.2 4,-1.5 -0.409 88.3 -30.9 116.0 171.3 11.2 32.4 16.6 41 41 A P B 345S+g 45 0C 58 0, 0.0 34,-0.5 0, 0.0 7,-0.1 -0.453 131.5 30.9 -61.3 123.4 8.1 30.5 17.8 42 42 A G T 345S+ 0 0 0 3,-2.3 9,-2.6 5,-0.8 8,-1.2 0.159 127.5 46.7 106.5 -11.5 8.9 26.8 17.7 43 43 A A T <45S- 0 0 14 -3,-2.4 6,-2.4 2,-0.4 -4,-0.1 0.613 134.7 -12.7-121.4 -77.4 12.5 27.6 18.4 44 44 A D T <5S+ 0 0 87 -4,-1.5 4,-0.2 4,-0.2 -5,-0.1 0.176 127.1 56.8-117.3 14.7 13.2 30.1 21.2 45 45 A Q B S- 0 0 54 0, 0.0 -5,-0.8 0, 0.0 3,-0.7 0.399 100.2-158.2 -81.4 133.2 6.2 26.8 21.5 48 48 A T T 3 + 0 0 99 1,-0.2 -4,-0.2 -4,-0.2 -5,-0.1 -0.360 56.9 7.9 -82.5 142.9 9.8 26.3 22.5 49 49 A G T 3 S+ 0 0 29 -6,-2.4 -1,-0.2 2,-0.2 -6,-0.2 0.718 76.4 123.4 70.2 17.5 12.2 23.7 21.2 50 50 A I S < S+ 0 0 3 -8,-1.2 13,-2.6 -3,-0.7 2,-0.4 0.854 81.1 33.2 -80.6 -21.4 10.3 22.2 18.4 51 51 A F E S-F 62 0B 3 -9,-2.6 2,-0.3 11,-0.2 11,-0.2 -0.966 70.2-179.4-132.8 134.6 13.1 23.0 16.0 52 52 A I E -F 61 0B 76 9,-2.1 9,-2.5 -2,-0.4 2,-0.4 -0.888 14.5-148.6-127.2 157.7 16.8 23.1 16.8 53 53 A I E -F 60 0B 17 -2,-0.3 7,-0.2 7,-0.2 -15,-0.1 -0.999 23.0-121.5-131.0 128.3 19.8 23.9 14.5 54 54 A N > - 0 0 75 5,-2.6 4,-1.9 -2,-0.4 5,-0.2 -0.637 25.8-133.0 -67.7 126.8 23.1 22.3 15.0 55 55 A P T 4 S+ 0 0 66 0, 0.0 -19,-2.7 0, 0.0 -1,-0.1 0.744 95.8 29.2 -54.0 -36.4 25.5 25.3 15.7 56 56 A I T 4 S+ 0 0 122 -21,-0.2 -22,-0.2 3,-0.1 -2,-0.0 0.821 126.0 38.3 -99.8 -33.5 28.3 24.2 13.2 57 57 A S T 4 S- 0 0 26 2,-0.1 3,-0.1 -21,-0.1 -22,-0.0 0.805 90.5-134.3 -85.6 -31.7 26.6 22.3 10.5 58 58 A G < + 0 0 0 -4,-1.9 -34,-2.7 1,-0.3 2,-0.5 0.554 48.5 158.7 83.7 11.6 23.4 24.4 10.2 59 59 A Q E -E 23 0B 41 -36,-0.2 -5,-2.6 -5,-0.2 2,-0.4 -0.563 29.3-152.3 -73.3 116.3 21.5 21.1 10.2 60 60 A L E -EF 22 53B 0 -38,-2.5 -39,-3.3 -2,-0.5 -38,-1.1 -0.831 17.0-178.5 -94.6 135.2 18.0 22.0 11.3 61 61 A S E -EF 20 52B 15 -9,-2.5 -9,-2.1 -2,-0.4 2,-0.4 -0.866 25.8-131.1-130.8 158.7 15.9 19.2 13.0 62 62 A V E -EF 19 51B 2 -43,-2.2 -43,-3.1 -2,-0.3 -11,-0.2 -0.883 15.8-151.8-107.9 142.0 12.4 18.9 14.4 63 63 A T + 0 0 46 -13,-2.6 -12,-0.1 -2,-0.4 -13,-0.1 0.647 68.4 0.8 -97.3 -11.4 12.3 17.4 18.0 64 64 A K S S- 0 0 97 -14,-0.4 -51,-0.1 -45,-0.1 2,-0.1 -0.921 92.8 -64.0-161.0 174.2 8.9 15.7 18.1 65 65 A P - 0 0 60 0, 0.0 2,-0.1 0, 0.0 -54,-0.1 -0.398 49.2-132.5 -72.2 147.7 5.9 15.0 15.8 66 66 A L - 0 0 12 -56,-0.4 -54,-2.3 -2,-0.1 2,-0.4 -0.423 6.6-149.8 -95.9 171.8 3.8 17.9 14.6 67 67 A D >> - 0 0 63 4,-0.4 4,-2.3 -56,-0.2 3,-1.8 -0.892 2.3-163.3-144.6 109.0 0.0 18.4 14.5 68 68 A R T 34 S+ 0 0 106 -2,-0.4 -1,-0.1 1,-0.3 30,-0.1 0.877 92.6 61.7 -66.9 -25.7 -1.4 20.5 11.7 69 69 A E T 34 S+ 0 0 137 1,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.595 113.7 35.6 -72.9 -13.0 -4.6 20.9 13.6 70 70 A L T <4 S+ 0 0 133 -3,-1.8 2,-0.4 1,-0.3 -2,-0.2 0.808 136.9 5.5-105.4 -53.1 -2.7 22.7 16.4 71 71 A I < + 0 0 63 -4,-2.3 -4,-0.4 1,-0.1 -1,-0.3 -0.964 61.0 178.2-135.8 116.7 0.0 24.7 14.7 72 72 A A + 0 0 27 -2,-0.4 26,-2.5 1,-0.2 2,-0.3 0.650 67.7 28.2 -92.2 -18.2 -0.1 24.7 10.8 73 73 A R E - C 0 97A 107 24,-0.2 2,-0.4 -5,-0.1 24,-0.2 -0.997 57.6-164.5-147.6 142.8 2.8 27.0 10.1 74 74 A F E - C 0 96A 8 22,-2.4 22,-2.5 -2,-0.3 2,-0.4 -0.937 4.1-163.9-123.7 144.9 6.1 28.0 11.8 75 75 A H E + C 0 95A 110 -34,-0.5 2,-0.3 -2,-0.4 20,-0.2 -0.976 21.0 163.5-133.7 112.1 8.2 31.0 10.9 76 76 A L E - C 0 94A 2 18,-2.5 18,-3.2 -2,-0.4 2,-0.4 -0.730 27.1-140.9-120.0 169.3 11.8 30.9 12.2 77 77 A R E -BC 39 93A 96 -38,-1.9 -38,-2.3 16,-0.3 2,-0.3 -0.994 10.6-147.6-134.3 134.8 14.9 32.8 11.3 78 78 A A E -BC 38 92A 6 14,-2.2 14,-1.8 -2,-0.4 2,-0.3 -0.806 16.6-161.9-100.0 152.4 18.4 31.3 11.1 79 79 A H E -B 37 0A 32 -42,-2.3 -42,-1.5 -2,-0.3 2,-0.4 -0.896 9.1-153.6-136.2 152.2 21.4 33.4 12.0 80 80 A A E -B 36 0A 4 9,-0.5 8,-2.7 -2,-0.3 9,-0.7 -0.995 17.6-179.9-135.2 126.2 25.1 33.1 11.3 81 81 A V E -BD 35 87A 29 -46,-2.0 -46,-1.8 -2,-0.4 6,-0.2 -0.914 19.8-125.7-131.5 148.5 27.7 34.7 13.5 82 82 A D > - 0 0 39 4,-2.7 3,-2.8 -2,-0.3 -48,-0.1 -0.172 49.4 -75.1 -83.9-176.1 31.5 34.9 13.6 83 83 A I T 3 S+ 0 0 139 -50,-0.3 -49,-0.1 1,-0.3 -1,-0.0 0.699 133.8 44.3 -54.1 -23.6 34.0 33.9 16.3 84 84 A N T 3 S- 0 0 132 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.221 122.6-101.0-106.6 10.0 33.0 37.0 18.3 85 85 A G S < S+ 0 0 46 -3,-2.8 2,-0.3 1,-0.3 -2,-0.1 0.493 71.9 146.2 86.0 1.8 29.3 36.8 17.9 86 86 A N - 0 0 92 1,-0.1 -4,-2.7 -5,-0.0 2,-0.4 -0.587 55.6-117.6 -71.3 133.6 29.0 39.3 15.1 87 87 A Q B -D 81 0A 96 -2,-0.3 -6,-0.3 -6,-0.2 3,-0.1 -0.588 21.2-158.0 -72.2 126.5 26.2 38.4 12.6 88 88 A V - 0 0 30 -8,-2.7 2,-0.3 -2,-0.4 -1,-0.2 0.633 69.6 -3.6 -82.8 -10.7 28.0 37.9 9.3 89 89 A E S S- 0 0 72 -9,-0.7 -9,-0.5 3,-0.0 -1,-0.2 -0.978 91.9 -66.2-168.8 166.0 24.8 38.4 7.3 90 90 A N - 0 0 147 -2,-0.3 2,-0.1 1,-0.1 -12,-0.1 -0.255 61.6 -98.8 -58.7 148.7 21.1 39.1 7.6 91 91 A P - 0 0 21 0, 0.0 2,-0.4 0, 0.0 -12,-0.2 -0.380 32.6-126.3 -70.3 147.5 19.0 36.3 9.0 92 92 A I E - C 0 78A 63 -14,-1.8 -14,-2.2 -3,-0.1 2,-0.3 -0.793 19.2-130.5 -96.7 129.5 17.2 34.0 6.6 93 93 A D E - C 0 77A 90 -2,-0.4 2,-0.4 -16,-0.2 -89,-0.4 -0.673 21.5-160.1 -77.0 144.1 13.4 33.5 7.2 94 94 A I E - C 0 76A 2 -18,-3.2 -18,-2.5 -2,-0.3 2,-0.5 -0.990 4.5-164.2-130.0 125.5 12.3 29.9 7.3 95 95 A V E - C 0 75A 34 -2,-0.4 -88,-3.1 -20,-0.2 2,-0.5 -0.938 5.0-172.4-114.5 126.6 8.7 28.9 6.7 96 96 A I E -aC 7 74A 0 -22,-2.5 -22,-2.4 -2,-0.5 2,-0.4 -0.990 5.0-162.8-122.5 117.3 7.5 25.4 7.7 97 97 A N E -aC 8 73A 27 -90,-2.5 -88,-3.5 -2,-0.5 2,-0.6 -0.853 14.1-140.9-100.7 135.8 4.1 24.3 6.8 98 98 A V E a 9 0A 0 -26,-2.5 -90,-0.0 -2,-0.4 -2,-0.0 -0.892 360.0 360.0 -97.2 119.7 2.7 21.2 8.6 99 99 A I 0 0 90 -90,-2.9 -88,-2.0 -2,-0.6 -31,-0.2 -0.782 360.0 360.0-110.7 360.0 0.8 19.2 6.0