==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION PROTEIN 21-SEP-98 3NCM . COMPND 2 MOLECULE: PROTEIN (NEURAL CELL ADHESION MOLECULE, LARGE . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR P.H.JENSEN,V.SOROKA,N.K.THOMSEN,V.BEREZIN,E.BOCK,F.M.POULSEN . 92 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5773.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 70.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 33.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Y 0 0 163 0, 0.0 27,-0.7 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0-170.6 -18.4 1.6 3.0 2 2 A V E +A 27 0A 11 25,-0.3 2,-0.6 26,-0.1 25,-0.3 -0.858 360.0 179.4-146.8 107.6 -14.8 2.6 2.2 3 3 A M E -A 26 0A 115 23,-0.9 23,-3.2 -2,-0.3 2,-0.6 -0.932 23.5-138.7-114.3 116.8 -13.3 5.9 3.4 4 4 A F E +A 25 0A 62 -2,-0.6 21,-0.3 21,-0.3 2,-0.3 -0.605 35.6 168.2 -75.4 115.2 -9.6 6.7 2.4 5 5 A K E +A 24 0A 106 19,-2.6 19,-1.4 -2,-0.6 -2,-0.0 -0.856 45.8 8.5-127.2 163.7 -7.9 8.2 5.5 6 6 A N S S+ 0 0 111 -2,-0.3 18,-1.5 17,-0.2 -1,-0.2 0.868 74.5 140.4 32.4 77.0 -4.2 9.1 6.6 7 7 A A - 0 0 18 16,-0.2 2,-0.7 -3,-0.1 16,-0.1 -0.546 35.3-164.3-145.0 78.4 -2.4 8.5 3.3 8 8 A P - 0 0 71 0, 0.0 14,-0.2 0, 0.0 80,-0.0 -0.481 14.7-154.6 -64.4 104.4 0.4 11.0 2.5 9 9 A T S S+ 0 0 48 -2,-0.7 2,-1.3 1,-0.2 62,-0.2 0.954 80.5 51.1 -50.9 -69.7 0.9 10.2 -1.3 10 10 A P S S+ 0 0 81 0, 0.0 80,-0.2 0, 0.0 -1,-0.2 -0.544 80.1 167.0 -72.6 96.7 4.6 11.4 -1.8 11 11 A Q E -b 90 0B 13 78,-3.8 80,-1.4 -2,-1.3 2,-0.3 -0.476 20.1-155.7-101.3 177.5 6.4 9.5 1.1 12 12 A E E +b 91 0B 150 78,-0.2 80,-0.2 -2,-0.1 2,-0.2 -0.894 14.6 168.0-158.6 125.2 10.1 9.0 1.7 13 13 A F - 0 0 68 78,-2.2 2,-0.3 -2,-0.3 6,-0.1 -0.539 39.0 -85.2-123.2-170.7 12.2 6.3 3.6 14 14 A K > - 0 0 137 -2,-0.2 3,-1.8 78,-0.1 2,-0.1 -0.808 44.7-100.0-104.7 143.9 15.8 5.3 3.9 15 15 A E T 3 S+ 0 0 111 -2,-0.3 49,-0.2 1,-0.3 48,-0.2 -0.371 110.2 10.5 -60.3 125.0 17.7 2.8 1.5 16 16 A G T 3 S+ 0 0 49 46,-1.7 -1,-0.3 47,-0.5 47,-0.3 0.734 104.6 125.0 78.3 22.2 17.9 -0.6 3.2 17 17 A E E < S-E 62 0C 79 -3,-1.8 2,-1.2 45,-1.6 45,-1.0 -0.721 74.5-100.4-110.2 164.4 15.5 0.4 6.0 18 18 A D E -E 61 0C 79 43,-0.3 43,-0.2 -2,-0.2 2,-0.2 -0.685 55.4-179.4 -82.4 98.6 12.2 -1.2 7.2 19 19 A A E -E 60 0C 0 41,-2.5 41,-1.0 -2,-1.2 2,-0.3 -0.592 18.7-157.5 -99.8 165.8 9.7 1.1 5.5 20 20 A V E -E 59 0C 24 39,-0.3 2,-0.7 -2,-0.2 39,-0.3 -0.999 17.7-131.3-138.9 139.7 5.8 1.2 5.5 21 21 A I E -E 58 0C 0 37,-1.2 37,-1.4 -2,-0.3 2,-0.6 -0.831 26.2-137.4 -95.5 115.6 3.5 2.7 2.9 22 22 A V + 0 0 31 -2,-0.7 2,-0.1 -14,-0.2 35,-0.1 -0.622 46.6 138.7 -76.9 118.2 1.0 4.9 4.8 23 23 A a - 0 0 0 -2,-0.6 2,-0.3 32,-0.2 -16,-0.2 -0.583 26.4-172.2-160.1 87.1 -2.5 4.4 3.3 24 24 A D E +A 5 0A 38 -18,-1.5 -19,-2.6 -19,-1.4 2,-0.3 -0.654 8.2 174.8 -87.0 142.1 -5.4 4.1 5.8 25 25 A V E -A 4 0A 6 30,-0.3 2,-1.4 -2,-0.3 -21,-0.3 -0.968 29.3-142.8-147.7 129.3 -8.9 3.1 4.5 26 26 A V E +A 3 0A 34 -23,-3.2 -23,-0.9 -2,-0.3 -22,-0.1 -0.597 35.2 171.8 -92.7 78.3 -12.1 2.4 6.4 27 27 A S E -A 2 0A 17 -2,-1.4 -25,-0.3 -25,-0.3 6,-0.1 -0.380 49.2 -91.9 -79.4 164.6 -13.5 -0.4 4.2 28 28 A S - 0 0 54 -27,-0.7 -26,-0.1 4,-0.1 -1,-0.0 0.924 64.3 -96.8 -42.1 -80.5 -16.6 -2.4 5.5 29 29 A L S S+ 0 0 155 3,-0.0 -2,-0.1 -3,-0.0 -1,-0.1 0.124 104.9 49.9-170.7 -63.4 -14.8 -5.2 7.4 30 30 A P S S+ 0 0 109 0, 0.0 47,-0.0 0, 0.0 -3,-0.0 0.954 105.1 57.7 -60.8 -53.3 -14.2 -8.7 5.6 31 31 A P S S- 0 0 21 0, 0.0 2,-0.2 0, 0.0 46,-0.2 0.282 70.4-173.5 -61.7-162.9 -12.7 -7.3 2.3 32 32 A T E -C 76 0B 80 44,-1.6 44,-2.9 42,-0.1 2,-0.2 -0.922 26.8 -66.4-170.2-165.7 -9.5 -5.0 2.2 33 33 A I E -C 75 0B 9 42,-0.3 2,-0.4 -2,-0.2 42,-0.3 -0.628 35.6-138.8-100.8 162.8 -7.1 -2.9 0.0 34 34 A I E -C 74 0B 34 40,-0.9 40,-1.2 -2,-0.2 2,-0.8 -0.982 7.9-142.9-125.2 126.8 -4.8 -4.1 -2.8 35 35 A W E +C 73 0B 0 -2,-0.4 7,-2.3 38,-0.2 8,-0.4 -0.777 33.1 168.5 -90.4 110.6 -1.3 -2.8 -3.3 36 36 A K E +C 72 0B 83 36,-2.3 36,-1.9 -2,-0.8 34,-0.0 -0.524 32.5 48.7-112.8-178.0 -0.6 -2.5 -7.1 37 37 A H S S+ 0 0 87 34,-0.2 5,-0.1 -2,-0.2 35,-0.1 0.394 94.9 48.6 63.8 150.6 2.2 -0.8 -9.2 38 38 A K S S+ 0 0 63 1,-0.2 33,-0.1 33,-0.1 -1,-0.1 0.914 134.1 18.0 54.3 43.7 5.9 -1.4 -8.5 39 39 A G S S- 0 0 26 6,-0.0 -1,-0.2 2,-0.0 -3,-0.0 0.199 106.2-113.3 150.4 -17.9 5.3 -5.2 -8.2 40 40 A R S S- 0 0 204 4,-0.0 -4,-0.1 3,-0.0 4,-0.1 0.957 93.0 -10.8 56.8 88.4 1.9 -5.8 -10.0 41 41 A D S >> S- 0 0 46 1,-0.1 3,-1.0 2,-0.1 4,-0.5 0.970 71.0-165.5 55.1 84.6 -0.4 -6.9 -7.1 42 42 A V H >> S+ 0 0 1 -7,-2.3 4,-3.0 1,-0.2 3,-1.1 0.853 81.7 70.6 -69.2 -32.4 2.1 -7.5 -4.2 43 43 A I H 34 S+ 0 0 61 -8,-0.4 -1,-0.2 1,-0.2 -2,-0.1 0.706 98.1 51.6 -58.3 -18.8 -0.6 -9.5 -2.2 44 44 A L H <4 S+ 0 0 138 -3,-1.0 -1,-0.2 -4,-0.1 -2,-0.2 0.711 117.6 34.7 -93.2 -20.7 -0.3 -12.3 -4.8 45 45 A K H << S- 0 0 79 -3,-1.1 -2,-0.2 -4,-0.5 -3,-0.1 0.808 78.9-167.7 -99.0 -37.9 3.6 -12.7 -4.6 46 46 A K < - 0 0 104 -4,-3.0 4,-0.1 3,-0.1 -3,-0.1 0.936 18.4-157.8 48.6 55.2 4.1 -11.8 -0.9 47 47 A D > - 0 0 64 -5,-0.2 3,-1.0 1,-0.1 -2,-0.0 0.055 32.2 -96.1 -53.1 171.3 7.9 -11.4 -1.3 48 48 A V T 3 S+ 0 0 147 1,-0.3 -1,-0.1 12,-0.0 -2,-0.0 0.719 124.2 49.0 -66.9 -19.4 10.2 -11.9 1.9 49 49 A R T 3 S+ 0 0 91 1,-0.1 12,-0.8 11,-0.1 2,-0.3 -0.204 91.7 86.2-115.6 45.7 10.2 -8.0 2.3 50 50 A F E < +F 60 0C 5 -3,-1.0 2,-0.5 10,-0.2 10,-0.2 -0.854 41.4 163.6-145.3 105.3 6.4 -7.2 2.1 51 51 A I E -F 59 0C 98 8,-1.9 8,-2.0 -2,-0.3 2,-0.3 -0.892 24.4-151.5-126.0 102.4 4.1 -7.4 5.2 52 52 A V E -F 58 0C 40 -2,-0.5 6,-0.2 6,-0.2 2,-0.1 -0.561 21.6-136.1 -73.4 129.0 0.7 -5.6 4.9 53 53 A L > - 0 0 53 4,-1.7 3,-1.8 -2,-0.3 4,-0.2 -0.354 23.3-103.6 -82.7 167.6 -0.4 -4.5 8.4 54 54 A S T 3 S+ 0 0 124 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.756 121.9 60.9 -61.6 -22.0 -3.9 -4.8 9.9 55 55 A N T 3 S- 0 0 58 -31,-0.1 -30,-0.3 -29,-0.0 -1,-0.3 0.213 123.9-103.0 -91.5 18.9 -4.4 -1.0 9.2 56 56 A N S < S+ 0 0 20 -3,-1.8 2,-0.2 1,-0.2 -2,-0.1 0.818 77.4 137.3 66.9 34.4 -3.9 -1.6 5.4 57 57 A Y - 0 0 24 -4,-0.2 -4,-1.7 -35,-0.1 2,-0.6 -0.628 53.2-126.8-103.1 166.0 -0.3 -0.3 5.3 58 58 A L E -EF 21 52C 0 -37,-1.4 2,-1.3 -6,-0.2 -37,-1.2 -0.821 15.1-161.8-119.5 97.2 2.6 -1.9 3.4 59 59 A Q E -EF 20 51C 63 -8,-2.0 -8,-1.9 -2,-0.6 2,-0.6 -0.573 10.6-170.0 -76.7 95.4 5.8 -2.7 5.5 60 60 A I E -EF 19 50C 1 -2,-1.3 -41,-2.5 -41,-1.0 2,-0.6 -0.755 18.7-135.4 -87.0 119.7 8.5 -3.2 2.8 61 61 A R E S-E 18 0C 138 -12,-0.8 -43,-0.3 -2,-0.6 3,-0.2 -0.656 84.7 -3.5 -80.3 117.4 11.6 -4.6 4.6 62 62 A G E S-E 17 0C 11 -45,-1.0 -46,-1.7 -2,-0.6 -45,-1.6 -0.152 85.9-141.8 97.3 -39.6 14.7 -2.7 3.4 63 63 A I - 0 0 0 -47,-0.3 -47,-0.5 -14,-0.2 -46,-0.3 0.945 20.4-140.6 42.3 73.6 12.8 -0.6 0.8 64 64 A K > - 0 0 104 -3,-0.2 3,-1.4 -49,-0.2 4,-0.1 -0.219 16.2-116.3 -59.8 150.6 15.5 -0.6 -2.0 65 65 A K T 3 S+ 0 0 117 1,-0.3 3,-0.5 2,-0.2 27,-0.3 0.711 117.0 55.8 -62.5 -17.6 16.1 2.7 -4.0 66 66 A T T 3 S+ 0 0 111 1,-0.2 -1,-0.3 3,-0.0 -2,-0.1 0.655 96.9 62.6 -89.3 -16.0 14.8 0.7 -7.1 67 67 A D S < S+ 0 0 31 -3,-1.4 2,-0.2 2,-0.1 -1,-0.2 0.256 84.7 100.0 -92.5 15.0 11.5 -0.3 -5.5 68 68 A E + 0 0 56 -3,-0.5 2,-0.2 -4,-0.1 23,-0.2 -0.604 40.5 86.4 -96.7 161.0 10.3 3.4 -5.1 69 69 A G E S- D 0 90B 21 21,-2.0 21,-1.2 -2,-0.2 2,-0.3 -0.730 91.0 -21.9 155.0 -99.4 7.9 5.2 -7.5 70 70 A T E - D 0 89B 39 19,-0.3 2,-0.4 -2,-0.2 19,-0.3 -0.739 48.5-163.7-151.0 101.3 4.1 5.1 -7.0 71 71 A Y E - D 0 88B 0 17,-2.1 17,-3.0 -2,-0.3 2,-0.7 -0.665 20.6-139.2 -82.2 131.7 2.2 2.3 -5.1 72 72 A R E -CD 36 87B 98 -36,-1.9 -36,-2.3 -2,-0.4 2,-0.4 -0.827 7.3-148.2 -98.1 117.0 -1.5 2.3 -6.0 73 73 A a E -CD 35 86B 0 13,-2.1 13,-1.8 -2,-0.7 2,-0.4 -0.651 14.5-171.9 -79.4 129.8 -3.8 1.7 -3.0 74 74 A E E -CD 34 85B 8 -40,-1.2 -40,-0.9 -2,-0.4 2,-0.6 -0.755 8.8-160.9-128.0 88.6 -7.0 -0.2 -4.2 75 75 A G E -CD 33 84B 0 9,-0.8 9,-2.5 -2,-0.4 2,-0.4 -0.534 25.3-179.6 -67.5 111.1 -9.7 -0.5 -1.4 76 76 A R E -CD 32 83B 81 -44,-2.9 -44,-1.6 -2,-0.6 2,-0.4 -0.956 21.9-166.5-125.3 141.1 -11.9 -3.3 -2.7 77 77 A I E > - D 0 82B 6 5,-1.9 5,-1.4 -2,-0.4 -75,-0.0 -0.964 5.7-170.8-120.6 134.7 -15.0 -5.1 -1.4 78 78 A L T > 5S+ 0 0 166 -2,-0.4 3,-0.9 3,-0.2 -1,-0.1 0.820 86.4 52.3 -93.4 -36.1 -16.3 -8.4 -2.8 79 79 A A T 3 5S+ 0 0 91 1,-0.3 2,-0.6 2,-0.0 -1,-0.0 0.985 126.6 24.6 -63.8 -54.8 -19.7 -8.6 -1.1 80 80 A R T 3 5S- 0 0 205 2,-0.1 -1,-0.3 -79,-0.0 -3,-0.2 -0.555 105.2-127.6-108.0 63.6 -20.7 -5.1 -2.3 81 81 A G T < 5 + 0 0 69 -3,-0.9 2,-0.4 -2,-0.6 -3,-0.2 0.306 48.2 161.4 -13.7 80.8 -18.4 -5.1 -5.4 82 82 A E E < - D 0 77B 53 -5,-1.4 -5,-1.9 -81,-0.0 2,-0.2 -0.907 25.3-171.4-116.8 143.7 -16.6 -1.8 -4.7 83 83 A I E + D 0 76B 103 -2,-0.4 2,-0.2 -7,-0.2 -7,-0.2 -0.639 17.5 160.8-136.2 81.1 -13.3 -0.6 -6.3 84 84 A N E + D 0 75B 56 -9,-2.5 -9,-0.8 -2,-0.2 2,-0.3 -0.672 13.0 150.5 -97.3 154.0 -11.8 2.6 -4.7 85 85 A F E - D 0 74B 107 -11,-0.3 2,-0.3 -2,-0.2 -11,-0.2 -0.987 23.9-164.8-167.8 176.2 -8.1 3.6 -5.1 86 86 A K E - D 0 73B 57 -13,-1.8 -13,-2.1 -2,-0.3 2,-0.6 -0.967 32.6-102.0-168.1 156.0 -5.4 6.4 -5.3 87 87 A D E - D 0 72B 82 -2,-0.3 2,-0.6 -15,-0.2 -15,-0.2 -0.784 30.0-166.3 -93.2 120.5 -1.7 6.7 -6.3 88 88 A I E - D 0 71B 0 -17,-3.0 -17,-2.1 -2,-0.6 2,-0.4 -0.906 12.7-144.5-106.0 119.5 0.8 6.9 -3.4 89 89 A Q E - D 0 70B 90 -2,-0.6 -78,-3.8 -19,-0.3 2,-0.4 -0.689 16.2-169.1 -85.1 130.8 4.3 8.1 -4.4 90 90 A V E -bD 11 69B 0 -21,-1.2 -21,-2.0 -2,-0.4 2,-0.4 -0.975 3.8-173.8-123.2 128.8 7.2 6.4 -2.5 91 91 A I E b 12 0B 84 -80,-1.4 -78,-2.2 -2,-0.4 -26,-0.1 -0.941 360.0 360.0-121.1 142.3 10.9 7.6 -2.7 92 92 A V 0 0 25 -2,-0.4 -78,-0.1 -27,-0.3 -27,-0.1 -0.718 360.0 360.0-161.2 360.0 13.9 5.9 -1.1