==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 10-DEC-02 1NE3 . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S28E; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOCOCCUS . AUTHOR B.WU,A.PINEDA-LUCENA,A.YEE,J.R.CORT,T.A.RAMELOT,M.KENNEDY, . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6372.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 29.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 232 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -58.0 8.7 18.1 -12.9 2 2 A D - 0 0 126 1,-0.2 2,-3.6 4,-0.0 0, 0.0 0.722 360.0-169.7 -86.5 -25.3 9.5 14.6 -11.7 3 3 A D + 0 0 127 53,-0.0 54,-0.4 51,-0.0 2,-0.3 -0.341 68.5 56.1 69.3 -65.5 5.8 13.8 -11.2 4 4 A A S S- 0 0 12 -2,-3.6 52,-0.2 52,-0.1 50,-0.0 -0.735 85.3-129.2 -98.9 147.3 6.8 10.6 -9.3 5 5 A T E -A 55 0A 26 50,-1.5 50,-1.7 -2,-0.3 2,-0.3 -0.731 24.4-109.7 -97.5 145.2 9.0 10.6 -6.2 6 6 A P E +A 54 0A 57 0, 0.0 24,-1.0 0, 0.0 25,-0.7 -0.543 47.8 159.6 -75.0 133.3 12.0 8.3 -5.9 7 7 A A E -AB 53 29A 1 46,-1.3 46,-2.0 -2,-0.3 2,-0.4 -0.980 32.6-131.3-151.3 156.9 11.7 5.5 -3.3 8 8 A E E -AB 52 28A 92 20,-0.7 20,-1.1 -2,-0.3 44,-0.3 -0.951 35.1-102.9-117.4 132.2 13.2 2.2 -2.5 9 9 A V E + B 0 27A 6 42,-2.5 41,-2.1 -2,-0.4 18,-0.3 -0.215 41.1 170.3 -50.6 132.9 11.2 -1.0 -1.8 10 10 A I E + 0 0 65 16,-1.4 2,-0.4 1,-0.4 17,-0.2 0.694 64.6 23.8-114.2 -40.9 11.1 -1.6 1.9 11 11 A E E - B 0 26A 93 15,-1.4 15,-3.5 37,-0.1 -1,-0.4 -0.974 64.2-156.7-132.2 145.5 8.6 -4.4 2.2 12 12 A V E - B 0 25A 35 -2,-0.4 2,-0.7 13,-0.3 13,-0.2 -0.961 11.3-141.6-123.9 140.0 7.4 -7.0 -0.3 13 13 A L E + B 0 24A 34 11,-1.0 11,-0.6 -2,-0.4 2,-0.4 -0.889 31.1 161.8-104.3 110.0 4.1 -8.9 -0.3 14 14 A K + 0 0 112 -2,-0.7 2,-0.5 9,-0.1 3,-0.1 -0.981 9.3 174.0-132.9 119.7 4.5 -12.5 -1.4 15 15 A R - 0 0 209 -2,-0.4 -2,-0.0 1,-0.3 4,-0.0 -0.921 58.4 -36.9-130.1 105.8 1.9 -15.2 -0.7 16 16 A T S S- 0 0 116 -2,-0.5 -1,-0.3 2,-0.0 3,-0.2 0.146 82.8 -70.7 67.8 169.1 2.4 -18.6 -2.2 17 17 A G S S- 0 0 67 1,-0.2 2,-0.7 -3,-0.1 -2,-0.2 0.779 105.6 -1.7 -61.7-119.9 3.8 -19.3 -5.6 18 18 A M S S+ 0 0 196 1,-0.1 -1,-0.2 2,-0.1 -2,-0.0 -0.690 72.2 144.4 -81.6 113.1 1.7 -18.4 -8.6 19 19 A T S S- 0 0 103 -2,-0.7 2,-0.2 -3,-0.2 -1,-0.1 -0.322 73.4 -9.8-145.6 54.8 -1.6 -17.0 -7.4 20 20 A G S S- 0 0 55 1,-0.1 3,-0.1 3,-0.0 -2,-0.1 -0.732 85.0 -94.3 160.3-104.1 -2.6 -14.3 -9.8 21 21 A E S S+ 0 0 158 1,-0.5 2,-0.4 -2,-0.2 -1,-0.1 0.138 95.6 56.4-178.1 -37.3 -0.4 -12.9 -12.6 22 22 A V S S- 0 0 52 22,-0.1 -1,-0.5 -3,-0.1 2,-0.4 -0.907 72.9-130.9-117.7 144.9 1.2 -9.8 -11.2 23 23 A M E - C 0 43A 44 20,-0.9 20,-4.0 -2,-0.4 2,-0.4 -0.750 16.6-145.6 -96.6 140.8 3.4 -9.5 -8.1 24 24 A Q E -BC 13 42A 90 -11,-0.6 -11,-1.0 -2,-0.4 2,-0.3 -0.825 17.2-178.1-106.8 144.5 2.8 -6.8 -5.5 25 25 A V E -BC 12 41A 2 16,-1.5 16,-1.1 -2,-0.4 2,-0.4 -0.933 22.2-125.4-137.7 159.5 5.5 -5.1 -3.4 26 26 A K E +BC 11 40A 59 -15,-3.5 -15,-1.4 -2,-0.3 -16,-1.4 -0.905 28.7 174.6-110.5 135.1 5.6 -2.5 -0.7 27 27 A C E -BC 9 39A 2 12,-1.2 12,-1.4 -2,-0.4 2,-0.4 -0.977 18.4-143.5-138.6 149.5 7.7 0.7 -1.0 28 28 A R E -BC 8 38A 106 -20,-1.1 -20,-0.7 -2,-0.3 10,-0.3 -0.929 31.9-101.2-117.7 139.8 8.1 3.7 1.2 29 29 A I E -B 7 0A 7 8,-3.8 7,-1.4 -2,-0.4 -22,-0.2 -0.373 29.5-170.8 -58.7 123.9 8.6 7.3 0.1 30 30 A L S S- 0 0 67 -24,-1.0 2,-0.3 1,-0.3 -23,-0.2 0.725 70.6 -8.6 -87.9 -26.2 12.3 8.1 0.4 31 31 A D S S+ 0 0 80 -25,-0.7 -1,-0.3 6,-0.1 2,-0.3 -0.973 84.0 89.6-164.4 161.9 11.7 11.8 -0.3 32 32 A G S S- 0 0 28 -2,-0.3 -28,-0.0 1,-0.1 0, 0.0 -0.924 84.2 -54.8 141.1-164.4 9.0 14.2 -1.5 33 33 A R S S+ 0 0 229 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.799 135.7 37.3 -80.9 -32.0 6.3 16.4 -0.1 34 34 A D S S- 0 0 91 -3,-0.1 -2,-0.1 3,-0.0 -1,-0.1 0.934 88.4-176.8 -83.0 -54.5 4.7 13.5 1.8 35 35 A K + 0 0 134 -4,-0.2 -5,-0.1 1,-0.1 3,-0.1 0.646 65.7 37.3 59.1 132.9 7.8 11.7 2.8 36 36 A G S S+ 0 0 33 -7,-1.4 2,-0.3 1,-0.3 -1,-0.1 0.386 83.3 149.0 76.8 -4.2 7.4 8.4 4.6 37 37 A R - 0 0 120 -9,-0.1 -8,-3.8 1,-0.0 2,-0.5 -0.471 30.2-163.1 -66.4 125.6 4.4 7.8 2.4 38 38 A I E +C 28 0A 75 -10,-0.3 2,-0.3 -2,-0.3 -10,-0.2 -0.959 11.7 174.9-116.9 127.2 4.0 4.0 1.7 39 39 A L E -C 27 0A 20 -12,-1.4 -12,-1.2 -2,-0.5 2,-0.4 -0.961 19.1-143.4-131.5 148.2 1.9 2.8 -1.2 40 40 A T E +C 26 0A 66 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.938 24.2 166.6-115.6 133.6 1.3 -0.7 -2.5 41 41 A R E -C 25 0A 101 -16,-1.1 -16,-1.5 -2,-0.4 2,-0.6 -0.975 38.3-108.7-143.4 154.4 1.0 -1.6 -6.2 42 42 A N E +C 24 0A 118 -2,-0.3 2,-0.4 -18,-0.2 -18,-0.3 -0.756 40.4 175.0 -87.9 120.3 0.9 -4.7 -8.4 43 43 A V E -C 23 0A 56 -20,-4.0 -20,-0.9 -2,-0.6 2,-0.3 -0.994 27.5-127.5-130.1 132.4 4.1 -4.9 -10.5 44 44 A M + 0 0 151 -2,-0.4 -22,-0.1 -22,-0.2 -20,-0.0 -0.609 69.5 49.2 -80.3 133.6 5.0 -7.8 -12.8 45 45 A G S S- 0 0 38 -2,-0.3 2,-1.5 2,-0.1 -2,-0.1 -0.312 99.0 -61.1 120.3 156.8 8.5 -9.2 -12.3 46 46 A P + 0 0 122 0, 0.0 2,-0.5 0, 0.0 -2,-0.1 -0.576 69.7 154.0 -75.0 91.1 10.7 -10.5 -9.5 47 47 A I + 0 0 27 -2,-1.5 2,-0.3 -4,-0.2 -4,-0.1 -0.986 12.6 169.7-125.9 123.3 11.0 -7.3 -7.4 48 48 A R > - 0 0 137 -2,-0.5 3,-1.4 1,-0.2 -39,-0.2 -0.856 48.7 -54.1-128.7 163.5 11.6 -7.4 -3.7 49 49 A E T 3 S+ 0 0 113 -2,-0.3 -39,-0.2 1,-0.2 -1,-0.2 0.042 118.4 50.0 -34.6 136.2 12.5 -4.9 -1.0 50 50 A G T 3 S+ 0 0 47 -41,-2.1 -1,-0.2 1,-0.4 -40,-0.1 0.041 86.0 109.1 115.3 -22.3 15.6 -2.9 -2.0 51 51 A D < - 0 0 49 -3,-1.4 -42,-2.5 -43,-0.1 2,-0.4 -0.066 69.9-111.8 -74.7-178.6 14.4 -2.0 -5.4 52 52 A I E +A 8 0A 105 -44,-0.3 2,-0.3 -3,-0.1 -44,-0.3 -0.984 34.2 177.0-124.3 129.0 13.3 1.5 -6.5 53 53 A L E -A 7 0A 34 -46,-2.0 -46,-1.3 -2,-0.4 2,-0.4 -0.861 25.8-120.0-127.2 161.3 9.8 2.4 -7.4 54 54 A M E -A 6 0A 105 -2,-0.3 2,-0.8 -48,-0.2 -25,-0.0 -0.868 14.8-144.7-106.5 135.7 8.0 5.7 -8.4 55 55 A L E -A 5 0A 12 -50,-1.7 -50,-1.5 -2,-0.4 2,-0.4 -0.874 20.2-173.7-102.1 108.4 5.2 7.2 -6.4 56 56 A L - 0 0 74 -2,-0.8 -52,-0.1 -52,-0.2 2,-0.1 -0.861 34.9-102.5-104.8 135.6 2.7 8.9 -8.7 57 57 A D - 0 0 108 -2,-0.4 2,-0.4 -54,-0.4 -1,-0.0 -0.348 38.6-139.3 -56.6 122.4 -0.2 10.9 -7.3 58 58 A T - 0 0 112 -2,-0.1 2,-0.4 1,-0.0 -1,-0.1 -0.746 8.4-140.1 -90.9 131.5 -3.3 8.8 -7.5 59 59 A I - 0 0 139 -2,-0.4 2,-0.5 1,-0.0 -1,-0.0 -0.769 13.4-134.4 -93.4 132.9 -6.5 10.4 -8.5 60 60 A R - 0 0 215 -2,-0.4 2,-0.3 1,-0.0 -1,-0.0 -0.743 16.9-142.3 -89.8 129.6 -9.7 9.4 -6.7 61 61 A E - 0 0 162 -2,-0.5 2,-0.4 1,-0.0 -1,-0.0 -0.646 13.4-124.1 -91.5 147.7 -12.7 8.7 -8.9 62 62 A A - 0 0 89 -2,-0.3 2,-0.5 1,-0.0 -1,-0.0 -0.747 18.5-135.8 -93.3 137.1 -16.2 9.7 -7.9 63 63 A K - 0 0 195 -2,-0.4 2,-0.4 2,-0.0 -1,-0.0 -0.813 16.6-153.6 -95.7 127.5 -18.9 7.0 -7.8 64 64 A E - 0 0 164 -2,-0.5 2,-0.5 2,-0.0 0, 0.0 -0.826 7.6-137.8-103.3 139.4 -22.2 7.9 -9.3 65 65 A I - 0 0 143 -2,-0.4 2,-0.6 2,-0.0 -2,-0.0 -0.822 11.8-151.6 -98.3 131.7 -25.5 6.3 -8.2 66 66 A R - 0 0 237 -2,-0.5 -2,-0.0 2,-0.0 0, 0.0 -0.912 11.1-164.0-107.2 119.5 -28.0 5.4 -10.9 67 67 A T 0 0 113 -2,-0.6 -2,-0.0 1,-0.0 0, 0.0 -0.771 360.0 360.0-103.3 147.5 -31.7 5.4 -9.9 68 68 A P 0 0 179 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.579 360.0 360.0 -75.0 360.0 -34.5 3.7 -11.8