==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 24-AUG-95 1NER . COMPND 2 MOLECULE: DNA-BINDING PROTEIN NER; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; . AUTHOR G.M.CLORE,T.E.STRZELECKA,A.M.GRONENBORN . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5756.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 62.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 36.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A C 0 0 154 0, 0.0 2,-1.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 66.0 13.9 15.1 6.6 2 2 A S + 0 0 113 1,-0.1 2,-0.3 2,-0.1 3,-0.3 -0.260 360.0 138.2 52.2 -92.4 13.0 11.5 7.3 3 3 A N S S- 0 0 131 -2,-1.1 -1,-0.1 1,-0.2 0, 0.0 -0.372 75.4 -84.1 57.8-114.8 9.3 11.8 6.4 4 4 A E S S+ 0 0 62 -2,-0.3 4,-0.3 2,-0.1 2,-0.2 0.354 100.2 102.3-166.4 -6.4 8.6 8.6 4.4 5 5 A K + 0 0 99 -3,-0.3 5,-0.1 1,-0.1 -2,-0.1 0.117 54.3 121.2 -77.0 29.7 9.5 9.2 0.7 6 6 A A S S- 0 0 43 -2,-0.2 -1,-0.1 -4,-0.1 4,-0.1 0.863 95.4 -44.0 -57.7-105.0 12.6 7.1 1.5 7 7 A R S S+ 0 0 165 -3,-0.1 61,-0.2 2,-0.1 -1,-0.1 0.596 114.8 96.2-104.9 -17.9 12.7 4.1 -0.9 8 8 A D S S- 0 0 24 -4,-0.3 2,-0.6 1,-0.1 58,-0.2 -0.192 95.7 -79.5 -69.0 167.3 9.0 3.1 -0.6 9 9 A W - 0 0 93 56,-1.2 5,-0.2 1,-0.1 -1,-0.1 -0.541 57.9-112.5 -69.2 114.5 6.4 4.3 -3.1 10 10 A H > - 0 0 80 -2,-0.6 4,-1.7 1,-0.1 5,-0.2 0.095 33.6 -96.9 -41.1 162.6 5.6 7.9 -2.1 11 11 A R H > S+ 0 0 215 1,-0.2 4,-1.4 2,-0.2 5,-0.2 0.866 131.4 41.3 -56.1 -32.6 2.1 8.5 -0.8 12 12 A A H >>S+ 0 0 52 2,-0.2 4,-2.1 1,-0.2 5,-0.8 0.777 105.6 62.8 -86.7 -26.5 1.2 9.5 -4.4 13 13 A D H 45S+ 0 0 64 3,-0.2 4,-0.4 2,-0.2 5,-0.3 0.814 106.8 48.3 -68.2 -23.5 3.2 6.8 -6.0 14 14 A V H X5S+ 0 0 6 -4,-1.7 4,-2.5 -5,-0.2 5,-0.3 0.970 124.5 25.5 -78.9 -59.5 0.9 4.4 -4.2 15 15 A I H X5S+ 0 0 53 -4,-1.4 4,-2.8 2,-0.2 5,-0.4 0.954 124.8 49.7 -72.8 -48.4 -2.5 5.9 -5.1 16 16 A A H <5S+ 0 0 59 -4,-2.1 4,-0.4 -5,-0.2 -3,-0.2 0.958 117.7 42.4 -55.5 -47.1 -1.4 7.7 -8.4 17 17 A G H 4< S+ 0 0 7 -4,-2.5 3,-2.8 -5,-0.3 5,-0.4 0.997 117.7 49.9 -64.0 -61.6 -2.7 2.2 -8.4 19 19 A K T 3< S+ 0 0 115 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.2 0.680 86.1 92.9 -53.1 -10.6 -5.5 4.7 -9.2 20 20 A K T 3 S+ 0 0 150 -4,-0.4 -1,-0.3 -5,-0.4 -2,-0.2 0.866 100.6 27.6 -54.4 -27.1 -3.7 4.8 -12.6 21 21 A R S < S- 0 0 140 -3,-2.8 -2,-0.2 -4,-0.3 -3,-0.1 0.726 137.3 -64.2 -95.4 -94.5 -6.2 2.2 -13.4 22 22 A K S S+ 0 0 194 -4,-0.3 2,-0.3 2,-0.0 -3,-0.2 -0.188 88.9 123.1-154.8 50.9 -9.3 2.6 -11.3 23 23 A L + 0 0 33 -5,-0.4 2,-0.3 -8,-0.2 3,-0.1 -0.879 28.2 176.4-117.9 151.2 -8.3 2.1 -7.7 24 24 A S >> - 0 0 39 -2,-0.3 3,-2.3 1,-0.1 4,-2.0 -0.972 39.1-123.7-150.9 131.7 -8.7 4.3 -4.6 25 25 A L H 3> S+ 0 0 40 -2,-0.3 4,-1.9 1,-0.3 5,-0.2 0.858 115.1 60.2 -46.8 -32.7 -7.8 3.4 -1.0 26 26 A S H 3> S+ 0 0 82 2,-0.2 4,-1.5 1,-0.2 -1,-0.3 0.855 108.1 43.8 -66.2 -29.9 -11.4 4.3 -0.2 27 27 A A H <> S+ 0 0 14 -3,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.934 113.1 47.9 -80.8 -47.2 -12.6 1.6 -2.5 28 28 A L H X S+ 0 0 3 -4,-2.0 4,-0.8 2,-0.2 5,-0.2 0.856 112.2 54.5 -62.2 -30.4 -10.1 -1.1 -1.4 29 29 A S H >X S+ 0 0 3 -4,-1.9 4,-1.9 -5,-0.4 3,-0.9 0.990 115.5 33.3 -67.8 -60.4 -11.0 -0.3 2.2 30 30 A R H 3< S+ 0 0 195 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.715 105.9 74.5 -70.5 -17.7 -14.8 -0.7 2.0 31 31 A Q H 3< S+ 0 0 119 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.857 113.2 24.1 -65.1 -30.0 -14.4 -3.5 -0.6 32 32 A F H << S- 0 0 112 -3,-0.9 -2,-0.2 -4,-0.8 -1,-0.2 0.705 115.2-109.9-105.0 -26.5 -13.3 -5.9 2.2 33 33 A G S < S+ 0 0 55 -4,-1.9 -3,-0.1 1,-0.4 -4,-0.1 -0.229 73.7 127.9 126.8 -46.7 -15.0 -4.1 5.2 34 34 A Y - 0 0 113 -6,-0.1 -1,-0.4 2,-0.1 -2,-0.2 -0.159 68.8-109.4 -45.4 126.5 -12.1 -2.5 7.2 35 35 A A > - 0 0 51 1,-0.1 4,-1.3 -3,-0.1 3,-0.3 -0.084 31.1-101.5 -53.2 164.2 -13.0 1.1 7.6 36 36 A P H > S+ 0 0 80 0, 0.0 4,-3.1 0, 0.0 5,-0.2 0.854 120.5 64.0 -59.3 -36.2 -10.8 3.6 5.6 37 37 A T H > S+ 0 0 100 2,-0.2 4,-2.2 3,-0.2 5,-0.3 0.947 101.2 50.2 -56.3 -47.1 -8.8 4.4 8.7 38 38 A T H > S+ 0 0 55 -3,-0.3 4,-0.8 1,-0.2 -1,-0.2 0.990 115.1 40.6 -54.9 -66.2 -7.5 0.8 8.9 39 39 A L H >< S+ 0 0 3 -4,-1.3 3,-0.7 2,-0.2 -1,-0.2 0.914 117.3 52.4 -50.0 -45.2 -6.3 0.7 5.3 40 40 A A H >< S+ 0 0 49 -4,-3.1 3,-1.6 1,-0.3 -2,-0.2 0.990 113.0 39.0 -55.8 -74.1 -5.0 4.2 5.6 41 41 A N H >X S+ 0 0 55 -4,-2.2 4,-1.8 1,-0.3 3,-1.5 0.547 93.5 93.3 -56.3 -1.0 -2.9 3.9 8.7 42 42 A A T << + 0 0 7 -4,-0.8 -1,-0.3 -3,-0.7 5,-0.2 0.535 69.0 74.4 -72.0 -0.8 -1.9 0.5 7.2 43 43 A L T <4 S+ 0 0 57 -3,-1.6 -1,-0.3 -4,-0.1 -2,-0.1 0.610 111.5 19.3 -85.8 -12.5 1.1 2.3 5.6 44 44 A E T <4 S+ 0 0 144 -3,-1.5 2,-0.3 -4,-0.1 -2,-0.2 0.628 102.0 87.2-126.9 -33.8 3.0 2.5 9.0 45 45 A R S < S- 0 0 172 -4,-1.8 2,-0.9 1,-0.1 -1,-0.1 -0.554 91.4-105.4 -74.4 132.1 1.5 -0.0 11.4 46 46 A H S S+ 0 0 177 -2,-0.3 -1,-0.1 1,-0.1 -3,-0.1 -0.330 77.1 124.7 -56.2 99.1 3.2 -3.5 11.1 47 47 A W >> + 0 0 81 -2,-0.9 3,-1.8 -5,-0.2 4,-0.8 -0.381 29.3 174.9-160.7 70.5 0.3 -5.3 9.3 48 48 A P H 3> S+ 0 0 68 0, 0.0 4,-1.5 0, 0.0 -2,-0.1 0.649 75.8 72.9 -57.2 -15.7 1.5 -6.8 6.0 49 49 A K H 3> S+ 0 0 135 1,-0.2 4,-1.1 2,-0.2 -2,-0.0 0.869 95.1 51.4 -71.1 -29.5 -2.0 -8.4 5.6 50 50 A G H <> S+ 0 0 0 -3,-1.8 4,-1.4 1,-0.2 -1,-0.2 0.837 105.2 56.1 -74.1 -28.8 -3.4 -5.0 4.8 51 51 A E H X S+ 0 0 24 -4,-0.8 4,-3.0 1,-0.2 5,-0.4 0.870 99.1 60.7 -70.6 -31.6 -0.7 -4.6 2.2 52 52 A Q H X S+ 0 0 83 -4,-1.5 4,-3.0 1,-0.2 -1,-0.2 0.911 98.9 58.1 -61.6 -36.8 -1.9 -7.8 0.6 53 53 A I H X S+ 0 0 16 -4,-1.1 4,-1.0 2,-0.2 -1,-0.2 0.968 112.7 38.2 -57.2 -52.1 -5.2 -6.0 0.0 54 54 A I H >X S+ 0 0 3 -4,-1.4 3,-1.1 2,-0.2 4,-0.9 0.973 119.7 45.3 -65.5 -53.2 -3.6 -3.3 -2.0 55 55 A A H ><>S+ 0 0 0 -4,-3.0 5,-1.6 1,-0.3 3,-0.6 0.892 103.8 66.1 -59.4 -35.0 -1.1 -5.5 -3.8 56 56 A N H ><5S+ 0 0 99 -4,-3.0 3,-1.1 -5,-0.4 -1,-0.3 0.877 94.5 59.9 -54.9 -34.8 -3.9 -8.0 -4.4 57 57 A A H <<5S+ 0 0 34 -3,-1.1 -1,-0.2 -4,-1.0 -2,-0.2 0.925 109.4 40.1 -62.3 -41.7 -5.4 -5.3 -6.7 58 58 A L T <<5S- 0 0 43 -4,-0.9 -1,-0.3 -3,-0.6 -2,-0.2 0.377 108.2-126.3 -87.7 7.5 -2.4 -5.3 -9.0 59 59 A E T < 5S+ 0 0 179 -3,-1.1 -3,-0.2 -4,-0.5 2,-0.1 0.778 77.2 113.0 55.1 21.7 -2.2 -9.1 -8.7 60 60 A T S > - 0 0 121 -2,-0.1 3,-2.3 1,-0.1 4,-0.5 -0.814 24.5-123.9-105.6 148.8 3.2 -9.0 -4.3 62 62 A P H >> S+ 0 0 4 0, 0.0 4,-1.9 0, 0.0 3,-0.9 0.779 108.1 76.9 -59.4 -23.7 3.6 -6.3 -1.5 63 63 A E H 34 S+ 0 0 38 1,-0.2 7,-0.2 2,-0.2 6,-0.1 0.638 89.3 58.4 -62.2 -9.7 7.3 -6.9 -1.9 64 64 A V H <4 S+ 0 0 61 -3,-2.3 -1,-0.2 1,-0.1 0, 0.0 0.792 108.0 41.2 -91.1 -30.3 7.0 -4.7 -5.1 65 65 A I H << S+ 0 0 3 -3,-0.9 -56,-1.2 -4,-0.5 -2,-0.2 0.730 126.4 35.8 -88.8 -20.8 5.6 -1.6 -3.3 66 66 A W S X S+ 0 0 15 -4,-1.9 4,-0.6 -58,-0.2 3,-0.3 -0.632 71.4 148.2-131.0 74.5 8.0 -2.0 -0.4 67 67 A P T >4 + 0 0 64 0, 0.0 3,-1.8 0, 0.0 -1,-0.1 0.981 70.0 50.9 -73.1 -64.2 11.3 -3.3 -1.8 68 68 A S T 34 S+ 0 0 67 1,-0.3 -60,-0.1 -61,-0.2 -5,-0.0 0.481 107.4 61.9 -58.1 5.8 14.0 -1.7 0.5 69 69 A R T 34 S+ 0 0 147 -3,-0.3 -1,-0.3 -6,-0.1 2,-0.1 0.736 106.2 40.0-102.0 -29.1 11.9 -3.1 3.4 70 70 A Y << - 0 0 87 -3,-1.8 2,-0.2 -4,-0.6 4,-0.0 -0.377 69.8-144.0-106.0-171.2 12.2 -6.9 2.5 71 71 A Q S S- 0 0 169 -2,-0.1 3,-0.1 -3,-0.0 -3,-0.1 -0.632 71.5 -47.3-159.7 93.8 15.1 -8.9 1.2 72 72 A A S S+ 0 0 105 -2,-0.2 -9,-0.0 1,-0.1 -2,-0.0 0.598 95.4 151.9 55.6 3.1 14.6 -11.8 -1.3 73 73 A G 0 0 41 1,-0.1 -1,-0.1 -10,-0.0 -3,-0.1 -0.071 360.0 360.0 -57.4 167.1 11.8 -12.7 1.1 74 74 A E 0 0 224 -3,-0.1 -1,-0.1 -13,-0.0 -2,-0.0 -0.818 360.0 360.0 -92.7 360.0 8.8 -14.6 -0.3