==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 17-NOV-94 1NHM . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; . AUTHOR C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6241.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 62.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A N 0 0 152 0, 0.0 66,-0.1 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0 169.4 6.8 -8.8 4.8 2 4 A A - 0 0 63 68,-0.2 65,-0.1 65,-0.1 61,-0.0 0.529 360.0-130.2 3.3 77.3 6.3 -7.3 1.2 3 5 A P - 0 0 28 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.237 8.6-127.1 -32.3 159.3 7.2 -3.6 1.9 4 6 A K - 0 0 180 0, 0.0 59,-0.1 0, 0.0 -2,-0.0 -0.734 37.4 -97.3-127.6 85.2 5.0 -0.7 0.8 5 7 A R - 0 0 193 -2,-0.4 55,-0.1 55,-0.1 3,-0.1 0.521 47.6-145.9 2.7 83.9 6.7 2.0 -1.4 6 8 A P - 0 0 35 0, 0.0 5,-0.1 0, 0.0 54,-0.0 0.127 45.3 -31.8 -53.1 176.6 7.6 4.7 1.2 7 9 A P - 0 0 19 0, 0.0 53,-0.4 0, 0.0 3,-0.0 0.226 43.1-159.9 -36.0 150.4 7.6 8.6 0.5 8 10 A S - 0 0 90 51,-0.1 2,-0.7 -3,-0.1 45,-0.1 0.154 52.1 -93.2-123.7 16.7 8.4 10.0 -2.9 9 11 A A S >> S+ 0 0 8 43,-0.2 4,-1.1 1,-0.1 3,-1.1 -0.675 125.2 59.8 106.9 -68.1 9.3 13.6 -2.0 10 12 A F H 3> S+ 0 0 61 -2,-0.7 4,-2.8 1,-0.2 5,-0.2 0.921 91.9 73.1 -52.2 -47.3 5.9 15.2 -2.6 11 13 A F H 3> S+ 0 0 111 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.797 97.4 46.4 -36.0 -46.4 4.7 12.8 0.1 12 14 A L H <> S+ 0 0 27 -3,-1.1 4,-2.2 2,-0.2 -1,-0.2 0.987 112.4 47.9 -62.7 -61.4 6.4 14.9 2.9 13 15 A F H X S+ 0 0 9 -4,-1.1 4,-1.9 1,-0.2 5,-0.3 0.862 107.7 59.1 -46.1 -44.6 5.2 18.2 1.7 14 16 A C H X S+ 0 0 26 -4,-2.8 4,-3.1 1,-0.2 3,-0.4 0.959 107.0 44.6 -51.4 -59.4 1.8 16.8 1.4 15 17 A S H < S+ 0 0 62 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.928 109.1 56.6 -50.0 -57.1 1.6 15.9 5.0 16 18 A E H < S+ 0 0 77 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.809 121.1 26.4 -45.8 -43.8 3.0 19.2 6.2 17 19 A Y H >X S+ 0 0 109 -4,-1.9 4,-2.3 -3,-0.4 3,-1.8 0.809 97.5 83.8 -96.8 -35.9 0.4 21.3 4.5 18 20 A R H 3X S+ 0 0 85 -4,-3.1 4,-2.8 -5,-0.3 5,-0.3 0.853 97.9 42.1 -33.9 -66.1 -2.8 19.1 4.1 19 21 A P H 34 S+ 0 0 48 0, 0.0 4,-0.3 0, 0.0 -1,-0.3 0.655 116.2 52.7 -61.5 -17.9 -4.1 19.9 7.7 20 22 A K H <> S+ 0 0 125 -3,-1.8 4,-1.0 2,-0.2 -2,-0.2 0.941 114.3 36.4 -83.7 -55.1 -3.2 23.5 7.3 21 23 A I H >X S+ 0 0 20 -4,-2.3 4,-2.0 1,-0.2 3,-1.3 0.951 119.6 51.4 -62.2 -47.0 -5.0 24.3 4.0 22 24 A K H 3< S+ 0 0 60 -4,-2.8 -1,-0.2 -5,-0.4 -2,-0.2 0.801 99.9 65.2 -56.8 -31.9 -7.8 21.9 5.2 23 25 A G H 34 S+ 0 0 47 -4,-0.3 -1,-0.3 -5,-0.3 -2,-0.2 0.856 114.9 29.5 -58.0 -36.6 -7.8 24.0 8.3 24 26 A E H << S+ 0 0 155 -3,-1.3 -2,-0.3 -4,-1.0 -1,-0.2 0.609 123.6 55.9 -93.9 -23.4 -8.9 26.9 6.1 25 27 A H >< + 0 0 70 -4,-2.0 3,-1.6 -5,-0.2 2,-0.2 -0.590 52.2 151.7-113.9 62.6 -10.7 24.4 3.8 26 28 A P T 3 S+ 0 0 118 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.103 75.0 68.2 -79.3 36.5 -13.1 22.4 6.0 27 29 A G T 3 S+ 0 0 75 -2,-0.2 2,-0.2 -5,-0.1 -5,-0.1 0.323 92.2 71.2-129.4 -10.8 -15.0 22.1 2.7 28 30 A L < - 0 0 57 -3,-1.6 2,-0.2 -6,-0.2 -3,-0.0 -0.471 69.3-135.3-105.2 177.0 -12.4 19.9 1.0 29 31 A S >>> - 0 0 82 -2,-0.2 4,-2.5 -3,-0.0 3,-1.0 -0.664 39.6 -93.5-122.3 176.9 -11.3 16.3 1.3 30 32 A I T 345S+ 0 0 107 1,-0.2 -12,-0.0 -2,-0.2 -2,-0.0 0.121 126.5 59.6 -83.6 22.2 -7.9 14.7 1.4 31 33 A G T 345S+ 0 0 53 3,-0.1 -1,-0.2 4,-0.0 4,-0.2 0.535 116.2 26.4-118.7 -27.7 -8.4 14.3 -2.4 32 34 A D T <>5S+ 0 0 71 -3,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.774 123.5 47.0-107.4 -46.6 -8.8 18.0 -3.2 33 35 A V H X5S+ 0 0 0 -4,-2.5 4,-1.3 1,-0.2 -3,-0.2 0.856 120.8 45.6 -62.2 -28.7 -6.9 19.8 -0.4 34 36 A A H > S+ 0 0 124 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.930 103.8 52.9 -49.5 -48.8 -5.0 17.8 -5.2 36 38 A K H >X S+ 0 0 85 -4,-2.6 4,-2.8 1,-0.2 3,-1.3 0.938 108.5 48.0 -52.4 -55.4 -3.8 21.4 -4.5 37 39 A L H 3X S+ 0 0 2 -4,-1.3 4,-2.8 1,-0.3 5,-0.3 0.946 102.5 64.7 -49.7 -53.4 -0.6 20.0 -2.9 38 40 A G H 3< S+ 0 0 28 -4,-2.8 -1,-0.3 1,-0.2 -2,-0.2 0.752 114.7 31.5 -37.2 -37.7 -0.2 17.8 -6.0 39 41 A E H XX S+ 0 0 100 -3,-1.3 3,-2.5 -4,-1.1 4,-1.5 0.918 112.7 58.5 -90.0 -60.6 0.2 21.0 -7.9 40 42 A M H 3< S+ 0 0 51 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.791 97.3 66.0 -39.3 -40.6 1.9 23.3 -5.4 41 43 A W T >< S+ 0 0 19 -4,-2.8 3,-0.6 1,-0.3 5,-0.3 0.787 105.3 41.4 -54.7 -33.6 4.8 20.8 -5.1 42 44 A N T <4 S+ 0 0 106 -3,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.753 115.6 53.4 -84.6 -29.4 5.8 21.4 -8.7 43 45 A N T 3< S+ 0 0 122 -4,-1.5 -1,-0.2 2,-0.1 -2,-0.2 -0.027 91.8 93.9 -94.1 26.8 5.2 25.1 -8.0 44 46 A T S < S- 0 0 52 -3,-0.6 -3,-0.1 -5,-0.2 -2,-0.0 0.019 96.4 -85.4 -97.7-150.1 7.5 25.2 -4.9 45 47 A A - 0 0 54 -2,-0.1 -3,-0.1 -4,-0.0 -2,-0.1 0.219 35.4-135.0-111.0 20.3 11.2 26.2 -5.2 46 48 A A S S+ 0 0 59 -5,-0.3 -4,-0.0 1,-0.2 -5,-0.0 0.643 105.7 69.0 32.2 25.2 12.9 23.0 -6.1 47 49 A D S S+ 0 0 115 2,-0.0 -1,-0.2 3,-0.0 0, 0.0 0.364 97.5 48.5-127.7 -35.4 15.4 24.1 -3.4 48 50 A D S > S+ 0 0 82 2,-0.2 4,-0.5 1,-0.1 -2,-0.1 0.476 105.8 58.2 -88.3 -9.3 12.7 23.5 -0.8 49 51 A K H > S+ 0 0 43 2,-0.1 4,-2.5 1,-0.1 3,-0.5 0.888 86.2 80.2 -85.4 -44.8 12.0 20.0 -2.3 50 52 A Q H > S+ 0 0 77 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.729 91.8 48.1 -27.3 -56.6 15.6 19.0 -1.7 51 53 A P H > S+ 0 0 51 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.971 113.9 45.9 -53.8 -58.9 15.0 18.2 2.0 52 54 A Y H X S+ 0 0 35 -4,-0.5 4,-3.0 -3,-0.5 -43,-0.2 0.903 112.2 53.7 -51.4 -47.1 11.8 16.1 1.4 53 55 A E H X S+ 0 0 61 -4,-2.5 4,-3.1 1,-0.2 5,-0.2 0.963 103.5 52.8 -55.9 -60.0 13.6 14.3 -1.4 54 56 A K H X S+ 0 0 133 -4,-2.6 4,-2.2 1,-0.2 -1,-0.2 0.865 115.2 44.8 -44.1 -40.7 16.6 13.2 0.6 55 57 A K H X S+ 0 0 113 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.996 112.2 49.0 -67.0 -64.3 14.1 11.8 3.1 56 58 A A H X S+ 0 0 3 -4,-3.0 4,-2.9 1,-0.2 5,-0.3 0.845 112.7 50.9 -40.5 -45.9 11.8 10.1 0.5 57 59 A A H X S+ 0 0 40 -4,-3.1 4,-3.0 2,-0.2 5,-0.2 0.987 108.8 48.4 -59.3 -64.6 15.0 8.6 -1.1 58 60 A K H X S+ 0 0 152 -4,-2.2 4,-2.2 -5,-0.2 -2,-0.2 0.900 116.0 47.3 -41.1 -51.7 16.3 7.1 2.2 59 61 A L H X S+ 0 0 65 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.970 114.2 41.7 -58.8 -61.8 12.9 5.7 2.8 60 62 A K H X S+ 0 0 104 -4,-2.9 4,-2.8 -53,-0.4 5,-0.2 0.869 111.3 60.1 -58.1 -34.4 12.1 4.1 -0.6 61 63 A E H X S+ 0 0 110 -4,-3.0 4,-1.3 -5,-0.3 -1,-0.2 0.979 103.1 49.6 -55.2 -58.6 15.7 2.9 -0.7 62 64 A K H >X S+ 0 0 162 -4,-2.2 4,-2.3 -5,-0.2 3,-1.0 0.921 112.1 50.7 -43.3 -54.4 15.1 0.9 2.5 63 65 A Y H 3X S+ 0 0 28 -4,-1.9 4,-2.9 1,-0.2 5,-0.5 0.962 102.9 56.4 -49.0 -68.2 12.0 -0.6 0.8 64 66 A E H 3X S+ 0 0 98 -4,-2.8 4,-0.9 1,-0.2 -1,-0.2 0.696 113.2 44.1 -39.4 -27.4 13.8 -1.6 -2.4 65 67 A K H X S+ 0 0 20 -4,-2.9 4,-1.3 -5,-0.3 3,-0.7 0.896 111.6 46.6 -82.2 -44.3 11.4 -5.9 -0.8 68 70 A A H 3X S+ 0 0 50 -4,-0.9 4,-1.7 -5,-0.5 -2,-0.2 0.791 113.1 52.5 -65.4 -26.1 14.2 -7.4 -2.9 69 71 A A H 3< S+ 0 0 58 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.668 115.1 39.6 -82.6 -18.7 15.0 -9.4 0.3 70 72 A Y H <4 S+ 0 0 90 -3,-0.7 -2,-0.2 -4,-0.5 3,-0.2 0.458 118.4 48.5-105.9 -7.6 11.3 -10.6 0.5 71 73 A R H < S+ 0 0 188 -4,-1.3 -2,-0.2 1,-0.1 -3,-0.2 0.774 112.6 45.6 -99.4 -37.9 11.0 -11.1 -3.3 72 74 A A S < S+ 0 0 65 -4,-1.7 2,-0.3 -5,-0.2 3,-0.2 -0.162 98.7 102.0 -98.8 37.9 14.2 -13.1 -3.8 73 75 A K + 0 0 126 -3,-0.2 -3,-0.1 1,-0.2 -4,-0.0 -0.765 56.2 47.5-117.6 163.7 13.5 -15.3 -0.7 74 76 A G S S+ 0 0 58 -2,-0.3 -1,-0.2 5,-0.1 -4,-0.0 0.844 88.6 99.5 72.4 35.2 12.1 -18.8 -0.4 75 77 A K + 0 0 146 -3,-0.2 -2,-0.1 0, 0.0 -3,-0.0 0.684 65.2 59.9-120.3 -40.9 14.6 -19.8 -3.1 76 78 A P S S- 0 0 116 0, 0.0 -3,-0.0 0, 0.0 3,-0.0 0.926 121.4-102.3 -48.4 -47.8 17.6 -21.4 -1.2 77 79 A D - 0 0 150 2,-0.0 2,-0.1 0, 0.0 -4,-0.0 0.920 62.5-128.4 85.4 61.6 15.0 -23.9 0.0 78 80 A A 0 0 65 1,-0.1 -5,-0.0 0, 0.0 0, 0.0 -0.541 360.0 360.0 152.3 58.6 15.0 -22.3 2.7 79 81 A A 0 0 174 -2,-0.1 -1,-0.1 -5,-0.0 -5,-0.1 -0.657 360.0 360.0-118.0 360.0 15.3 -22.7 6.5