==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING 17-NOV-94 1NHN . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; . AUTHOR C.M.READ,P.D.CARY,C.CRANE-ROBINSON,P.C.DRISCOLL, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6261.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A N 0 0 154 0, 0.0 66,-0.0 0, 0.0 69,-0.0 0.000 360.0 360.0 360.0 161.4 8.0 -8.8 5.3 2 4 A A - 0 0 49 68,-0.1 65,-0.1 65,-0.1 64,-0.0 0.572 360.0-122.5 6.0 85.2 7.1 -7.3 1.8 3 5 A P - 0 0 24 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.126 17.4-137.0 -35.4 153.6 8.1 -3.6 2.2 4 6 A K - 0 0 169 0, 0.0 59,-0.0 0, 0.0 -2,-0.0 -0.804 34.8 -91.7-133.2 94.4 5.4 -0.9 1.7 5 7 A R - 0 0 196 -2,-0.4 55,-0.1 55,-0.1 3,-0.1 0.506 44.6-153.6 1.8 93.2 6.2 2.2 -0.3 6 8 A P - 0 0 38 0, 0.0 5,-0.1 0, 0.0 50,-0.0 0.001 42.6 -41.2 -63.0 179.4 7.4 5.0 2.1 7 9 A P - 0 0 30 0, 0.0 53,-0.2 0, 0.0 0, 0.0 0.231 40.5-150.0 -36.0 161.6 7.1 8.9 1.4 8 10 A S - 0 0 62 -3,-0.1 2,-0.9 51,-0.1 45,-0.1 0.166 46.5 -99.1-130.4 18.6 7.8 10.6 -1.9 9 11 A A S > S+ 0 0 1 43,-0.3 4,-1.3 1,-0.1 44,-0.1 -0.393 128.5 58.6 93.1 -49.3 9.1 14.1 -1.1 10 12 A F H > S+ 0 0 49 -2,-0.9 4,-2.7 1,-0.2 -1,-0.1 0.773 94.6 64.7 -77.2 -28.3 5.6 15.3 -1.8 11 13 A F H > S+ 0 0 112 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.917 101.6 48.0 -63.0 -43.6 4.3 13.0 0.9 12 14 A L H > S+ 0 0 20 1,-0.2 4,-2.1 2,-0.2 3,-0.3 0.988 114.5 47.0 -56.9 -58.4 6.1 14.9 3.7 13 15 A F H X S+ 0 0 2 -4,-1.3 4,-2.4 1,-0.2 5,-0.3 0.865 106.3 59.2 -47.9 -46.1 4.8 18.2 2.3 14 16 A C H X S+ 0 0 31 -4,-2.7 4,-2.6 1,-0.2 -1,-0.2 0.938 107.4 45.5 -52.3 -53.1 1.3 16.7 2.1 15 17 A S H < S+ 0 0 55 -4,-2.0 -2,-0.2 -3,-0.3 -1,-0.2 0.960 112.2 50.4 -55.4 -58.6 1.2 16.0 5.7 16 18 A E H < S+ 0 0 120 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.819 119.9 34.2 -51.2 -42.0 2.6 19.4 6.8 17 19 A Y H >X S+ 0 0 81 -4,-2.4 3,-2.9 -5,-0.2 4,-1.8 0.782 90.9 87.2 -92.2 -29.3 0.2 21.5 4.7 18 20 A R H 3X S+ 0 0 93 -4,-2.6 4,-3.1 -5,-0.3 5,-0.3 0.851 95.9 44.3 -34.2 -58.4 -3.1 19.5 4.7 19 21 A P H 34 S+ 0 0 65 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.430 111.4 54.5 -71.9 -1.2 -4.2 21.2 8.1 20 22 A K H <> S+ 0 0 140 -3,-2.9 4,-1.1 2,-0.2 -2,-0.2 0.855 117.2 33.0 -95.3 -50.8 -3.2 24.7 6.9 21 23 A I H >X S+ 0 0 12 -4,-1.8 4,-2.2 2,-0.2 3,-1.1 0.959 124.7 46.0 -68.9 -50.4 -5.1 24.7 3.7 22 24 A K H 3< S+ 0 0 95 -4,-3.1 -1,-0.2 -5,-0.4 -2,-0.2 0.879 101.1 71.7 -56.5 -37.3 -7.8 22.6 5.4 23 25 A G H 34 S+ 0 0 55 -5,-0.3 -1,-0.3 1,-0.3 -2,-0.2 0.868 116.4 20.1 -42.0 -46.5 -7.3 25.2 8.2 24 26 A E H << S+ 0 0 134 -3,-1.1 -1,-0.3 -4,-1.1 -2,-0.2 0.558 126.1 60.6 -99.2 -17.7 -9.1 27.7 6.0 25 27 A H >< + 0 0 49 -4,-2.2 3,-1.5 -5,-0.2 -1,-0.2 -0.537 52.4 147.6-110.1 57.2 -10.7 24.9 3.9 26 28 A P T 3 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 -0.038 75.6 62.7 -80.5 34.0 -12.8 23.0 6.6 27 29 A G T 3 S+ 0 0 72 -5,-0.1 2,-0.1 2,-0.1 -2,-0.1 0.386 89.5 83.3-130.5 -16.7 -15.1 22.4 3.6 28 30 A L < - 0 0 63 -3,-1.5 2,-0.2 -6,-0.1 -3,-0.0 -0.257 66.9-133.1 -88.5 178.6 -12.6 20.4 1.4 29 31 A S >>> - 0 0 84 -2,-0.1 4,-2.4 -3,-0.0 5,-0.5 -0.630 35.0 -98.1-119.9 178.0 -11.7 16.7 1.4 30 32 A I T 345S+ 0 0 127 1,-0.2 -12,-0.0 -2,-0.2 -2,-0.0 0.047 125.1 60.1 -89.4 22.9 -8.4 14.9 1.3 31 33 A G T 3>5S+ 0 0 42 3,-0.1 4,-0.5 4,-0.0 -1,-0.2 0.529 114.8 28.9-119.5 -30.9 -9.2 14.6 -2.4 32 34 A D H <>5S+ 0 0 73 -3,-0.5 4,-2.7 2,-0.2 -2,-0.2 0.844 123.2 45.1-101.3 -50.2 -9.3 18.4 -3.1 33 35 A V H X5S+ 0 0 4 -4,-2.4 4,-2.5 1,-0.3 -3,-0.2 0.864 116.5 53.5 -59.6 -31.0 -7.0 19.8 -0.4 34 36 A A H >X S+ 0 0 89 -4,-2.7 4,-2.9 2,-0.2 3,-1.6 0.977 113.3 40.5 -56.0 -60.9 -4.1 21.6 -4.1 37 39 A L H 3X S+ 0 0 4 -4,-2.5 4,-2.7 1,-0.3 5,-0.3 0.940 105.3 69.0 -50.1 -51.1 -1.0 20.1 -2.5 38 40 A G H 3< S+ 0 0 30 -4,-3.3 -1,-0.3 1,-0.2 -2,-0.2 0.724 114.8 26.2 -35.0 -36.6 -0.7 17.9 -5.6 39 41 A E H XX S+ 0 0 115 -3,-1.6 4,-1.8 -4,-1.1 3,-1.4 0.839 113.0 62.9 -98.8 -52.4 0.1 21.1 -7.5 40 42 A M H 3< S+ 0 0 43 -4,-2.9 -2,-0.2 1,-0.3 -3,-0.2 0.809 98.9 61.0 -46.0 -35.8 1.6 23.4 -4.8 41 43 A W T >< S+ 0 0 21 -4,-2.7 3,-1.0 -5,-0.2 -1,-0.3 0.855 104.4 46.1 -60.6 -40.4 4.5 20.9 -4.4 42 44 A N T <4 S+ 0 0 119 -3,-1.4 2,-0.3 -5,-0.3 -1,-0.2 0.953 123.5 35.6 -63.9 -51.6 5.6 21.2 -8.0 43 45 A N T 3< S+ 0 0 130 -4,-1.8 -1,-0.3 2,-0.1 -2,-0.2 -0.381 99.9 115.3 -97.7 45.4 5.4 24.9 -7.7 44 46 A T S < S- 0 0 37 -3,-1.0 2,-1.0 -2,-0.3 -3,-0.1 -0.007 88.2 -57.4 -96.1-153.9 6.6 24.9 -4.0 45 47 A A >> - 0 0 53 1,-0.1 3,-3.1 -2,-0.1 4,-0.9 -0.842 49.3-148.7 -96.4 102.0 9.8 26.4 -2.7 46 48 A A H 3> S+ 0 0 76 -2,-1.0 4,-0.6 1,-0.3 -1,-0.1 0.628 96.5 54.7 -45.6 -20.6 12.3 24.5 -4.8 47 49 A D H 34 S+ 0 0 131 2,-0.2 -1,-0.3 1,-0.2 -2,-0.0 0.471 102.0 57.4 -95.1 -5.3 14.8 24.8 -1.9 48 50 A D H <> S+ 0 0 61 -3,-3.1 4,-1.3 2,-0.2 -2,-0.2 0.561 93.4 68.3 -95.9 -19.4 12.3 23.2 0.5 49 51 A K H X S+ 0 0 49 -4,-0.9 4,-3.3 1,-0.2 5,-0.2 0.964 87.8 69.4 -66.7 -49.7 12.1 20.2 -1.8 50 52 A Q H X S+ 0 0 79 -4,-0.6 4,-2.5 1,-0.2 5,-0.2 0.805 102.2 39.5 -34.8 -60.0 15.7 19.4 -0.8 51 53 A P H > S+ 0 0 69 0, 0.0 4,-1.6 0, 0.0 -1,-0.2 0.971 118.0 48.6 -57.6 -56.3 15.0 18.3 2.8 52 54 A Y H X S+ 0 0 18 -4,-1.3 4,-2.6 1,-0.2 5,-0.3 0.914 113.3 50.0 -48.3 -49.5 11.8 16.5 1.9 53 55 A E H X S+ 0 0 72 -4,-3.3 4,-3.2 1,-0.2 5,-0.4 0.969 105.4 52.3 -56.1 -65.0 13.7 14.7 -0.9 54 56 A K H X S+ 0 0 149 -4,-2.5 4,-1.1 -5,-0.2 -1,-0.2 0.763 116.1 44.5 -46.3 -28.7 16.6 13.5 1.2 55 57 A K H X S+ 0 0 117 -4,-1.6 4,-2.1 -3,-0.3 5,-0.2 0.972 117.2 39.0 -82.0 -65.5 14.1 12.0 3.6 56 58 A A H X S+ 0 0 1 -4,-2.6 4,-2.8 1,-0.2 5,-0.3 0.894 116.9 54.9 -49.2 -43.4 11.6 10.3 1.2 57 59 A A H X S+ 0 0 46 -4,-3.2 4,-2.7 -5,-0.3 -1,-0.2 0.943 106.6 48.6 -55.7 -54.3 14.5 9.3 -1.0 58 60 A K H X S+ 0 0 125 -4,-1.1 4,-2.1 -5,-0.4 -1,-0.2 0.931 115.1 44.9 -53.9 -50.1 16.4 7.5 1.9 59 61 A L H X S+ 0 0 61 -4,-2.1 4,-1.8 2,-0.2 -2,-0.2 0.925 117.0 42.4 -63.1 -47.9 13.3 5.6 3.0 60 62 A K H X S+ 0 0 76 -4,-2.8 4,-2.5 -5,-0.2 5,-0.2 0.860 110.4 59.1 -69.0 -34.6 12.1 4.5 -0.5 61 63 A E H X S+ 0 0 73 -4,-2.7 4,-1.4 -5,-0.3 -2,-0.2 0.981 105.3 47.4 -57.3 -59.1 15.6 3.7 -1.5 62 64 A K H >X S+ 0 0 129 -4,-2.1 4,-2.6 -5,-0.2 3,-0.8 0.936 112.0 54.3 -46.3 -54.2 15.9 1.1 1.3 63 65 A Y H 3X S+ 0 0 63 -4,-1.8 4,-2.9 1,-0.2 5,-0.4 0.936 102.0 52.6 -44.8 -70.2 12.6 -0.3 0.2 64 66 A E H 3X S+ 0 0 105 -4,-2.5 4,-1.4 1,-0.2 -1,-0.2 0.755 115.6 44.5 -41.2 -32.0 13.4 -1.0 -3.4 65 67 A K H X S+ 0 0 51 -4,-2.9 3,-1.2 -5,-0.3 4,-1.0 0.933 108.2 49.3 -76.3 -47.4 12.0 -5.6 -1.7 68 70 A A H 3X S+ 0 0 57 -4,-1.4 4,-2.4 -5,-0.4 3,-0.3 0.857 112.8 51.3 -57.2 -34.5 14.2 -6.8 -4.5 69 71 A A H 3< S+ 0 0 60 -4,-2.2 4,-0.3 1,-0.2 -1,-0.3 0.636 108.8 48.9 -78.9 -16.0 15.8 -8.9 -1.8 70 72 A Y H << S+ 0 0 119 -3,-1.2 -1,-0.2 -4,-0.5 -2,-0.2 0.479 116.3 43.5 -99.8 -7.0 12.5 -10.4 -0.7 71 73 A R H < S+ 0 0 208 -4,-1.0 4,-0.3 -3,-0.3 -2,-0.2 0.828 98.4 68.7-100.6 -51.7 11.5 -11.2 -4.3 72 74 A A S < S+ 0 0 64 -4,-2.4 2,-0.2 -5,-0.2 -3,-0.1 0.759 115.1 23.2 -36.2 -36.8 14.8 -12.7 -5.5 73 75 A K S S+ 0 0 96 -4,-0.3 0, 0.0 -5,-0.1 0, 0.0 -0.588 73.7 92.5-123.1-176.6 14.1 -15.6 -3.1 74 76 A G S S+ 0 0 68 -2,-0.2 -1,-0.1 1,-0.0 -2,-0.1 -0.369 101.4 32.3 122.0 -48.6 11.2 -17.3 -1.4 75 77 A K S S+ 0 0 192 -4,-0.3 -2,-0.1 -3,-0.0 -3,-0.1 0.857 117.5 43.1-105.2 -51.2 10.4 -20.0 -4.0 76 78 A P S S+ 0 0 76 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 0.855 72.7 174.8 -66.1 -33.7 13.6 -21.2 -5.9 77 79 A D + 0 0 115 1,-0.2 -4,-0.1 2,-0.1 0, 0.0 0.682 51.8 93.6 28.4 41.2 15.4 -21.2 -2.5 78 80 A A 0 0 82 0, 0.0 -1,-0.2 0, 0.0 -5,-0.0 -0.212 360.0 360.0-145.4 41.4 18.5 -22.7 -4.2 79 81 A A 0 0 142 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.411 360.0 360.0 77.7 360.0 20.4 -19.4 -4.9