==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 14-JUN-10 3NHC . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.I.APOSTOL,D.EISENBERG . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1414.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 41.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 41.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 103 0, 0.0 2,-0.3 0, 0.0 12,-0.2 0.000 360.0 360.0 360.0 174.7 4.8 5.3 -7.2 2 2 A Y E -A 12 0A 156 10,-2.3 10,-2.0 2,-0.0 2,-0.3 -0.980 360.0-167.3-146.0 152.0 3.4 6.1 -3.7 3 3 A M E -A 11 0A 164 -2,-0.3 2,-0.4 8,-0.2 8,-0.2 -0.998 5.6-176.8-144.1 141.0 4.5 5.7 -0.0 4 4 A L E -A 10 0A 92 6,-2.5 6,-2.1 -2,-0.3 2,-0.4 -0.996 8.3-178.0-135.4 128.9 2.8 6.0 3.4 5 5 A G E A 9 0A 66 -2,-0.4 4,-0.2 4,-0.2 -2,-0.0 -0.997 360.0 360.0-132.4 142.1 4.7 5.6 6.8 6 6 A S 0 0 144 2,-2.3 -2,-0.0 -2,-0.4 0, 0.0 -0.969 360.0 360.0-148.6 360.0 3.2 5.7 10.3 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B G 0 0 74 0, 0.0 -2,-2.3 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 160.0 4.3 0.7 9.7 9 2 B Y E -A 5 0A 191 -4,-0.2 2,-0.3 2,-0.0 -4,-0.2 -0.995 360.0-173.6-152.5 151.9 4.6 1.2 5.9 10 3 B M E +A 4 0A 116 -6,-2.1 -6,-2.5 -2,-0.3 2,-0.3 -0.962 19.3 158.8-145.8 134.7 2.8 0.8 2.7 11 4 B L E +A 3 0A 104 -2,-0.3 2,-0.3 -8,-0.2 -8,-0.2 -0.968 11.5 178.5-151.2 163.9 4.1 1.4 -0.8 12 5 B G E A 2 0A 23 -10,-2.0 -10,-2.3 -2,-0.3 -2,-0.0 -0.980 360.0 360.0-164.0 153.9 3.7 0.6 -4.5 13 6 B S 0 0 181 -2,-0.3 -2,-0.0 -12,-0.2 0, 0.0 -0.992 360.0 360.0-140.6 360.0 5.1 1.3 -8.0