==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 14-JUN-10 3NHD . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.I.APOSTOL,D.EISENBERG . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1274.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 97 0, 0.0 2,-0.3 0, 0.0 12,-0.2 0.000 360.0 360.0 360.0 163.2 -16.2 8.3 1.1 2 2 A Y E -A 12 0A 147 10,-2.6 10,-2.5 2,-0.0 2,-0.3 -0.978 360.0-158.2-143.9 162.6 -13.0 6.5 1.9 3 3 A V E -A 11 0A 105 -2,-0.3 2,-0.5 8,-0.2 8,-0.2 -0.995 3.4-166.4-142.2 131.5 -9.2 6.7 1.4 4 4 A L E -A 10 0A 83 6,-2.4 6,-2.0 -2,-0.3 -2,-0.0 -0.987 12.0-155.2-113.4 122.5 -6.5 4.1 1.6 5 5 A G 0 0 66 -2,-0.5 4,-0.2 4,-0.2 -1,-0.1 0.885 360.0 360.0 -68.6 -36.0 -3.0 5.8 1.8 6 6 A S 0 0 138 2,-0.1 3,-0.1 3,-0.1 4,-0.1 -0.882 360.0 360.0-131.8 360.0 -1.2 2.8 0.2 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B G 0 0 92 0, 0.0 -2,-0.1 0, 0.0 -4,-0.0 0.000 360.0 360.0 360.0 162.6 -1.0 3.0 -4.8 9 2 B Y - 0 0 171 -4,-0.2 2,-0.4 -3,-0.1 -4,-0.2 -0.255 360.0-145.9 -59.3 158.4 -3.5 5.0 -2.8 10 3 B V E -A 4 0A 63 -6,-2.0 -6,-2.4 -4,-0.1 2,-0.4 -0.991 11.5-170.0-133.8 120.0 -7.2 4.4 -3.3 11 4 B L E -A 3 0A 117 -2,-0.4 2,-0.4 -8,-0.2 -8,-0.2 -0.949 6.8-178.1-109.1 135.7 -10.0 7.1 -3.2 12 5 B G E A 2 0A 13 -10,-2.5 -10,-2.6 -2,-0.4 -2,-0.0 -0.989 360.0 360.0-135.3 132.3 -13.7 6.2 -3.1 13 6 B S 0 0 182 -2,-0.4 -2,-0.0 -12,-0.2 -10,-0.0 -0.903 360.0 360.0-138.4 360.0 -16.7 8.5 -3.1