==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 16-JUN-10 3NIH . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR W.S.CHOI,B.-C.JEONG,M.-R.LEE,H.K.SONG . 82 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5147.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 51.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 17.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 115 A V 0 0 153 0, 0.0 76,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 159.6 10.1 23.9 -4.8 2 116 A H + 0 0 81 34,-0.1 75,-0.2 75,-0.1 76,-0.1 0.327 360.0 128.8 -86.4 6.2 12.6 21.1 -5.8 3 117 A K + 0 0 99 74,-0.3 34,-0.0 1,-0.1 75,-0.0 -0.324 29.3 176.0 -55.8 141.0 11.4 20.9 -9.4 4 118 A H > - 0 0 26 3,-0.1 3,-1.8 71,-0.0 -1,-0.1 -0.193 16.6-173.8-140.8 42.0 14.3 21.1 -11.9 5 119 A T T 3 + 0 0 109 1,-0.2 3,-0.1 70,-0.0 -2,-0.0 -0.107 66.7 11.2 -49.7 121.3 12.3 20.6 -15.0 6 120 A G T 3 S+ 0 0 87 1,-0.3 2,-0.3 0, 0.0 -1,-0.2 0.543 121.4 59.6 89.4 8.6 14.4 20.3 -18.2 7 121 A R S < S- 0 0 152 -3,-1.8 -1,-0.3 56,-0.0 -3,-0.1 -0.925 92.5 -76.2-151.4 174.5 17.8 20.0 -16.5 8 122 A N - 0 0 67 -2,-0.3 56,-0.3 1,-0.1 54,-0.1 -0.382 32.3-132.9 -71.8 155.6 19.6 17.8 -14.0 9 123 A C + 0 0 15 54,-3.0 53,-0.2 52,-0.1 3,-0.1 0.989 29.5 175.5 -69.0 -65.8 18.9 18.0 -10.3 10 124 A G + 0 0 23 51,-1.8 2,-0.1 1,-0.2 52,-0.1 0.589 13.1 168.3 68.6 9.7 22.5 18.2 -9.1 11 125 A R - 0 0 84 49,-0.1 50,-1.9 -9,-0.1 2,-0.4 -0.384 34.6-127.2 -55.7 123.2 21.3 18.8 -5.5 12 126 A K B -A 60 0A 136 48,-0.2 48,-0.2 -2,-0.1 2,-0.1 -0.631 20.9-125.5 -78.0 128.5 24.3 18.3 -3.2 13 127 A F - 0 0 12 46,-2.7 2,-0.3 -2,-0.4 46,-0.2 -0.456 18.1-148.7 -72.1 142.7 23.8 15.9 -0.4 14 128 A K > - 0 0 136 -2,-0.1 3,-2.0 4,-0.1 39,-0.2 -0.786 36.7 -84.5-104.2 153.2 24.4 16.9 3.2 15 129 A I T 3 S+ 0 0 122 -2,-0.3 39,-0.2 1,-0.2 40,-0.1 -0.386 117.4 24.0 -57.3 128.2 25.7 14.5 5.9 16 130 A G T 3 S+ 0 0 46 37,-2.4 -1,-0.2 1,-0.4 38,-0.1 0.294 93.6 123.8 98.4 -8.6 22.8 12.7 7.4 17 131 A E < - 0 0 43 -3,-2.0 36,-3.2 37,-0.1 -1,-0.4 -0.494 66.8-103.3 -81.1 154.0 20.5 13.1 4.4 18 132 A P E -B 52 0B 34 0, 0.0 17,-0.5 0, 0.0 2,-0.4 -0.548 33.3-167.1 -77.8 139.5 18.9 10.1 2.6 19 133 A L E -B 51 0B 3 32,-2.6 32,-2.3 -2,-0.2 2,-0.5 -0.985 6.3-150.7-125.9 143.6 20.3 8.9 -0.7 20 134 A Y E +BC 50 33B 39 13,-2.5 13,-2.5 -2,-0.4 2,-0.3 -0.950 16.0 173.3-120.9 127.1 18.6 6.5 -3.1 21 135 A R E -B 49 0B 54 28,-2.1 28,-2.6 -2,-0.5 2,-0.4 -0.919 15.2-153.3-122.9 156.7 20.2 4.0 -5.5 22 136 A C E > -B 48 0B 7 9,-0.4 4,-2.7 -2,-0.3 26,-0.2 -0.980 10.6-151.1-134.5 121.5 18.6 1.4 -7.7 23 137 A H T 4 S+ 0 0 143 24,-2.2 -1,-0.1 -2,-0.4 25,-0.1 0.896 100.3 37.2 -53.8 -46.6 20.4 -1.8 -8.8 24 138 A E T 4 S+ 0 0 67 1,-0.1 -1,-0.2 23,-0.1 46,-0.1 0.940 123.2 38.9 -71.7 -50.5 18.2 -2.0 -12.0 25 139 A C T 4 S+ 0 0 1 45,-0.1 45,-3.1 44,-0.1 46,-0.5 0.815 99.0 83.8 -77.6 -34.2 17.8 1.7 -12.9 26 140 A G B < -D 69 0C 6 -4,-2.7 43,-0.2 43,-0.2 3,-0.1 -0.507 68.5-144.7 -74.8 137.4 21.3 2.9 -12.0 27 141 A C S S- 0 0 64 41,-1.8 2,-0.3 -2,-0.2 -1,-0.1 0.885 84.3 -11.5 -63.1 -43.3 24.1 2.6 -14.6 28 142 A D S > S- 0 0 87 40,-0.3 3,-1.6 -6,-0.0 -6,-0.2 -0.881 85.4 -82.7-146.2-178.8 26.5 2.0 -11.7 29 143 A D T 3 S+ 0 0 120 -2,-0.3 -6,-0.0 1,-0.3 53,-0.0 0.433 119.6 62.5 -69.5 -2.8 26.7 2.2 -7.9 30 144 A T T 3 S+ 0 0 52 51,-0.1 52,-1.8 2,-0.0 2,-0.5 0.498 76.6 103.7-100.8 -5.8 27.5 6.0 -8.0 31 145 A C < + 0 0 1 -3,-1.6 -9,-0.4 50,-0.2 2,-0.3 -0.685 53.4 167.5 -81.3 120.4 24.2 6.9 -9.6 32 146 A V - 0 0 0 -2,-0.5 30,-3.4 28,-0.3 2,-0.4 -0.904 29.6-148.7-140.9 157.2 21.9 8.3 -6.9 33 147 A L B -C 20 0B 4 -13,-2.5 -13,-2.5 -2,-0.3 2,-0.1 -0.963 20.0-129.3-125.5 142.3 18.6 10.2 -6.3 34 148 A C >> - 0 0 4 -2,-0.4 4,-2.7 -15,-0.2 3,-0.8 -0.368 34.1-102.2 -79.7 172.8 17.7 12.6 -3.5 35 149 A I T 34 S+ 0 0 77 -17,-0.5 -1,-0.1 1,-0.2 -16,-0.1 0.769 121.8 54.3 -68.6 -27.1 14.6 12.3 -1.4 36 150 A H T 34 S+ 0 0 53 1,-0.1 41,-1.0 40,-0.1 -1,-0.2 0.705 117.2 36.9 -76.7 -19.4 12.8 15.1 -3.4 37 151 A C T <4 S+ 0 0 3 -3,-0.8 39,-2.1 39,-0.2 -2,-0.2 0.792 89.6 99.8-104.4 -38.4 13.5 13.3 -6.7 38 152 A F < - 0 0 22 -4,-2.7 3,-0.1 37,-0.2 37,-0.0 -0.328 53.0-165.3 -59.6 122.9 13.1 9.6 -5.8 39 153 A N > - 0 0 4 -2,-0.1 3,-1.9 1,-0.1 4,-0.5 -0.956 16.3-154.3-114.3 114.7 9.7 8.3 -6.9 40 154 A P G > S+ 0 0 75 0, 0.0 3,-1.4 0, 0.0 -1,-0.1 0.809 94.3 68.5 -55.5 -29.3 8.6 4.9 -5.5 41 155 A K G 3 S+ 0 0 145 1,-0.3 3,-0.4 2,-0.2 -3,-0.0 0.718 95.4 53.9 -63.0 -25.3 6.4 4.5 -8.6 42 156 A D G < S+ 0 0 31 -3,-1.9 -1,-0.3 1,-0.2 -4,-0.0 0.662 113.5 43.0 -77.6 -18.5 9.5 4.2 -10.7 43 157 A H X + 0 0 9 -3,-1.4 3,-1.6 -4,-0.5 2,-0.2 -0.140 66.9 161.9-131.3 37.7 10.9 1.3 -8.6 44 158 A V T 3 S- 0 0 104 -3,-0.4 3,-0.1 1,-0.3 -3,-0.1 -0.451 85.3 -9.1 -64.5 124.1 8.2 -1.2 -7.7 45 159 A N T 3 S+ 0 0 156 -2,-0.2 -1,-0.3 1,-0.2 2,-0.1 0.609 104.8 136.2 55.8 15.1 9.9 -4.4 -6.6 46 160 A H S < S- 0 0 66 -3,-1.6 2,-1.2 1,-0.1 -1,-0.2 -0.351 70.6-100.8 -73.5 165.8 13.2 -3.0 -7.8 47 161 A H - 0 0 130 -2,-0.1 -24,-2.2 -3,-0.1 2,-0.4 -0.705 50.4-176.5 -98.1 86.0 16.2 -3.4 -5.6 48 162 A V E -B 22 0B 49 -2,-1.2 2,-0.7 -26,-0.2 -26,-0.2 -0.690 15.0-159.8 -91.1 128.3 16.4 -0.0 -3.9 49 163 A C E -B 21 0B 52 -28,-2.6 -28,-2.1 -2,-0.4 2,-0.6 -0.922 7.1-170.8-106.1 108.0 19.2 0.9 -1.6 50 164 A T E +B 20 0B 80 -2,-0.7 2,-0.2 -30,-0.2 -30,-0.2 -0.907 14.1 175.8-103.2 117.2 18.4 3.8 0.7 51 165 A D E -B 19 0B 68 -32,-2.3 -32,-2.6 -2,-0.6 2,-0.6 -0.679 33.0-119.2-112.4 163.9 21.4 5.0 2.6 52 166 A I E -B 18 0B 107 -2,-0.2 -35,-0.1 -34,-0.2 -37,-0.1 -0.949 38.8-118.2-103.8 120.5 22.2 7.8 5.1 53 167 A C - 0 0 4 -36,-3.2 -37,-2.4 -2,-0.6 2,-0.2 -0.267 34.1-167.7 -57.4 139.1 24.9 10.1 3.7 54 168 A T - 0 0 57 -39,-0.2 -37,-0.1 -38,-0.1 -1,-0.1 -0.462 40.0 -95.2-114.0-172.5 28.1 10.3 5.8 55 169 A E S S+ 0 0 139 -2,-0.2 -1,-0.0 1,-0.1 -2,-0.0 0.872 125.3 50.2 -68.9 -38.5 31.2 12.6 5.8 56 170 A F S S+ 0 0 164 -3,-0.0 2,-0.2 2,-0.0 -1,-0.1 0.980 104.0 59.4 -65.6 -61.8 33.0 10.0 3.6 57 171 A T S S+ 0 0 45 25,-0.1 2,-0.3 2,-0.0 -3,-0.1 -0.490 71.0 159.9 -67.7 138.9 30.3 9.6 1.0 58 172 A S + 0 0 54 25,-0.8 25,-2.2 -2,-0.2 2,-0.3 -0.916 11.2 90.9-164.8 132.8 29.6 12.9 -0.7 59 173 A G B -E 82 0D 10 -2,-0.3 -46,-2.7 23,-0.2 2,-0.3 -0.969 54.4 -58.5 172.4-154.1 28.0 14.1 -4.0 60 174 A I B -A 12 0A 65 21,-2.0 -28,-0.3 -2,-0.3 -48,-0.2 -0.893 42.9-101.6-131.3 151.0 25.0 15.1 -6.1 61 175 A C - 0 0 1 -50,-1.9 -51,-1.8 -2,-0.3 -28,-0.2 -0.500 23.0-154.3 -73.4 136.3 21.6 13.8 -7.2 62 176 A D > + 0 0 2 -30,-3.4 3,-2.6 -2,-0.2 6,-0.2 0.323 44.4 136.7 -97.4 4.8 21.6 12.4 -10.8 63 177 A C T 3 S+ 0 0 6 -31,-0.3 -54,-3.0 1,-0.3 -53,-0.2 -0.313 76.3 18.6 -54.7 129.2 17.9 12.9 -11.5 64 178 A G T 3 S+ 0 0 37 -56,-0.3 2,-1.0 1,-0.2 -1,-0.3 0.360 95.0 111.6 84.8 -5.4 17.5 14.3 -15.0 65 179 A D X - 0 0 45 -3,-2.6 3,-2.1 1,-0.1 4,-0.2 -0.834 48.4-172.7 -96.4 93.8 21.0 13.1 -15.9 66 180 A E G > S+ 0 0 109 -2,-1.0 3,-1.2 1,-0.3 -1,-0.1 0.706 77.7 71.3 -65.2 -21.3 19.9 10.4 -18.4 67 181 A E G 3 S+ 0 0 159 1,-0.2 -1,-0.3 -3,-0.1 3,-0.0 0.511 97.8 53.0 -66.0 -7.9 23.6 9.3 -18.7 68 182 A A G < S+ 0 0 0 -3,-2.1 -41,-1.8 -6,-0.2 -40,-0.3 0.428 104.0 63.3-107.6 -2.4 23.1 7.9 -15.1 69 183 A W B < -D 26 0C 12 -3,-1.2 -43,-0.2 -43,-0.2 -44,-0.1 -0.940 54.1-158.0-133.9 146.9 20.0 5.8 -15.7 70 184 A N S S+ 0 0 108 -45,-3.1 -44,-0.1 -2,-0.3 -45,-0.1 0.624 87.5 41.5 -92.0 -20.6 18.9 2.8 -17.7 71 185 A S S S- 0 0 53 -46,-0.5 2,-0.3 -29,-0.0 -29,-0.0 -0.899 95.6 -97.9-123.4 154.0 15.2 3.7 -17.5 72 186 A P - 0 0 93 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.608 44.2-150.9 -69.0 129.0 13.3 7.0 -17.9 73 187 A L - 0 0 24 -2,-0.3 2,-0.4 -48,-0.0 -35,-0.1 -0.566 9.1-142.2 -96.3 164.7 12.6 8.4 -14.4 74 188 A H - 0 0 112 -2,-0.2 -32,-0.1 -37,-0.1 -33,-0.1 -0.821 27.1-125.3-131.7 93.5 9.7 10.6 -13.3 75 189 A C > - 0 0 15 -2,-0.4 3,-0.8 1,-0.1 4,-0.2 0.006 6.3-143.9 -39.2 125.5 10.9 13.2 -10.7 76 190 A K G > S+ 0 0 107 -39,-2.1 3,-1.9 1,-0.2 -39,-0.2 0.886 102.4 59.6 -58.5 -40.0 8.8 13.0 -7.5 77 191 A A G 3 S+ 0 0 16 -41,-1.0 -74,-0.3 1,-0.3 -1,-0.2 0.737 95.3 63.5 -60.6 -24.3 9.1 16.9 -7.2 78 192 A E G < 0 0 89 -3,-0.8 -1,-0.3 -41,-0.1 -2,-0.2 0.498 360.0 360.0 -79.8 -5.1 7.4 17.1 -10.6 79 193 A E < 0 0 127 -3,-1.9 -3,-0.1 -4,-0.2 -76,-0.1 0.056 360.0 360.0-100.7 360.0 4.2 15.6 -9.1 80 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 81 1 B R 0 0 82 0, 0.0 -21,-2.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 159.4 27.1 10.8 -8.5 82 2 B I B E 59 0D 13 -52,-1.8 -23,-0.2 -23,-0.2 -25,-0.1 -0.861 360.0 360.0-101.3 137.1 28.1 9.9 -5.0 83 3 B A 0 0 91 -25,-2.2 -25,-0.8 -2,-0.4 -24,-0.0 -0.750 360.0 360.0 -96.4 360.0 31.8 9.8 -4.2