==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 16-JUN-10 3NII . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR W.S.CHOI,B.-C.JEONG,M.-R.LEE,H.K.SONG . 82 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5130.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 17.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 115 A V 0 0 148 0, 0.0 76,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 154.0 9.8 23.9 -4.9 2 116 A H + 0 0 83 75,-0.1 75,-0.2 34,-0.1 76,-0.1 0.348 360.0 127.8 -80.6 6.8 12.5 21.2 -5.6 3 117 A K + 0 0 109 74,-0.3 34,-0.0 1,-0.1 33,-0.0 -0.312 33.0 177.6 -60.4 145.1 11.1 20.9 -9.2 4 118 A H > - 0 0 26 3,-0.1 3,-1.9 -2,-0.0 -1,-0.1 -0.129 11.9-173.1-146.1 40.2 13.8 21.2 -11.9 5 119 A T T 3 + 0 0 102 1,-0.2 3,-0.1 70,-0.0 -2,-0.0 -0.052 69.6 12.9 -41.9 126.3 11.8 20.7 -15.1 6 120 A G T 3 S+ 0 0 87 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.452 121.2 55.4 86.7 2.3 14.0 20.4 -18.2 7 121 A R S < S- 0 0 146 -3,-1.9 -1,-0.2 58,-0.0 -3,-0.1 -0.916 91.4 -74.1-150.6 176.3 17.4 20.0 -16.5 8 122 A N - 0 0 66 -2,-0.3 56,-0.2 1,-0.1 54,-0.1 -0.353 33.2-131.1 -71.8 156.5 19.3 17.9 -14.0 9 123 A C + 0 0 16 54,-2.9 53,-0.1 1,-0.1 3,-0.1 0.990 29.9 176.6 -68.9 -64.9 18.5 18.1 -10.2 10 124 A G + 0 0 24 51,-1.7 2,-0.2 1,-0.2 52,-0.1 0.546 13.2 165.1 71.1 6.2 22.2 18.4 -9.1 11 125 A R - 0 0 92 49,-0.1 50,-2.0 -9,-0.1 2,-0.3 -0.405 35.7-129.4 -56.6 120.3 21.0 18.9 -5.4 12 126 A K B -A 60 0A 121 48,-0.2 48,-0.3 -2,-0.2 2,-0.2 -0.591 19.7-124.3 -77.1 132.4 24.1 18.4 -3.3 13 127 A F - 0 0 7 46,-2.8 2,-0.3 -2,-0.3 46,-0.1 -0.507 20.5-151.8 -77.2 144.1 23.8 15.9 -0.4 14 128 A K > - 0 0 139 -2,-0.2 3,-1.9 4,-0.1 39,-0.3 -0.753 36.7 -78.2-109.1 160.1 24.5 16.9 3.2 15 129 A I T 3 S+ 0 0 111 -2,-0.3 39,-0.2 1,-0.2 -1,-0.1 -0.369 118.7 19.8 -57.8 128.7 25.7 14.7 6.0 16 130 A G T 3 S+ 0 0 47 37,-3.0 -1,-0.2 1,-0.3 38,-0.1 0.262 94.2 125.5 94.9 -10.2 22.8 12.7 7.5 17 131 A E < - 0 0 53 -3,-1.9 36,-3.0 36,-0.1 -1,-0.3 -0.470 65.2-106.6 -79.7 151.2 20.5 13.1 4.4 18 132 A P E -B 52 0B 37 0, 0.0 17,-0.5 0, 0.0 2,-0.4 -0.600 31.3-165.4 -79.9 138.5 19.0 10.1 2.7 19 133 A L E -B 51 0B 1 32,-2.3 32,-2.1 -2,-0.3 2,-0.5 -0.982 7.4-147.4-123.7 139.7 20.4 9.0 -0.7 20 134 A Y E +BC 50 33B 41 13,-2.7 13,-2.3 -2,-0.4 2,-0.3 -0.917 16.5 176.4-114.8 125.5 18.6 6.5 -3.1 21 135 A R E -B 49 0B 71 28,-2.2 28,-2.8 -2,-0.5 2,-0.4 -0.929 12.3-157.4-121.0 147.6 20.3 4.1 -5.4 22 136 A C E > -B 48 0B 8 9,-0.4 4,-2.4 -2,-0.3 26,-0.2 -0.991 11.5-149.2-129.5 125.2 18.6 1.5 -7.7 23 137 A H T 4 S+ 0 0 148 24,-2.0 -1,-0.1 -2,-0.4 25,-0.1 0.910 98.7 31.6 -55.9 -49.1 20.5 -1.6 -8.9 24 138 A E T 4 S+ 0 0 65 1,-0.1 -1,-0.2 23,-0.1 46,-0.1 0.848 123.2 44.7 -81.5 -36.2 18.5 -1.9 -12.2 25 139 A C T 4 S+ 0 0 1 45,-0.1 45,-2.8 44,-0.1 46,-0.4 0.858 94.2 89.7 -78.6 -36.2 17.8 1.8 -12.9 26 140 A G B < -D 69 0C 8 -4,-2.4 43,-0.2 43,-0.2 3,-0.1 -0.480 67.0-148.9 -69.3 122.9 21.3 3.1 -12.1 27 141 A C S S- 0 0 73 41,-2.7 2,-0.2 -2,-0.3 -1,-0.1 0.931 86.8 -10.0 -50.1 -53.2 23.8 3.2 -15.0 28 142 A D S > S- 0 0 72 40,-0.4 3,-1.2 -3,-0.0 -1,-0.1 -0.805 85.5 -90.8-135.3-176.3 26.5 2.6 -12.4 29 143 A D T 3 S+ 0 0 125 1,-0.3 -6,-0.0 -2,-0.2 -2,-0.0 0.394 118.2 65.3 -83.8 4.3 26.6 2.5 -8.5 30 144 A T T 3 S+ 0 0 44 51,-0.1 52,-1.5 2,-0.0 2,-0.5 0.507 77.3 107.1 -93.9 -8.5 27.5 6.2 -8.2 31 145 A C < + 0 0 1 -3,-1.2 -9,-0.4 50,-0.2 2,-0.3 -0.605 51.4 170.8 -78.4 120.7 24.1 7.1 -9.7 32 146 A V - 0 0 0 -2,-0.5 30,-3.2 28,-0.3 2,-0.3 -0.880 27.9-150.5-136.1 158.3 21.9 8.5 -7.0 33 147 A L B -C 20 0B 3 -13,-2.3 -13,-2.7 -2,-0.3 2,-0.1 -0.964 19.3-130.7-127.3 145.1 18.6 10.3 -6.3 34 148 A C >> - 0 0 4 -2,-0.3 4,-2.8 -15,-0.2 3,-0.9 -0.409 33.9-102.1 -84.1 170.6 17.6 12.7 -3.5 35 149 A I T 34 S+ 0 0 76 -17,-0.5 -1,-0.1 1,-0.2 -16,-0.1 0.809 121.8 54.6 -64.5 -31.0 14.5 12.3 -1.3 36 150 A H T 34 S+ 0 0 52 1,-0.1 41,-0.8 40,-0.1 -1,-0.2 0.724 117.8 35.2 -74.2 -21.1 12.7 15.0 -3.3 37 151 A C T <4 S+ 0 0 3 -3,-0.9 39,-2.0 39,-0.2 -2,-0.2 0.804 88.7 100.6-103.1 -41.0 13.3 13.3 -6.6 38 152 A F < - 0 0 22 -4,-2.8 3,-0.1 37,-0.2 37,-0.0 -0.294 53.1-164.2 -55.0 120.7 13.1 9.5 -5.8 39 153 A N > - 0 0 4 1,-0.1 3,-2.2 -2,-0.1 4,-0.4 -0.940 14.5-157.0-111.4 111.4 9.7 8.2 -6.9 40 154 A P G > S+ 0 0 77 0, 0.0 3,-1.4 0, 0.0 -1,-0.1 0.784 92.9 68.9 -54.7 -28.1 8.8 4.7 -5.4 41 155 A K G 3 S+ 0 0 135 1,-0.3 3,-0.4 2,-0.2 -3,-0.0 0.696 95.7 54.8 -62.8 -22.3 6.4 4.3 -8.4 42 156 A D G < S+ 0 0 30 -3,-2.2 -1,-0.3 1,-0.2 -4,-0.0 0.628 113.2 41.0 -81.4 -17.8 9.5 4.1 -10.6 43 157 A H X + 0 0 9 -3,-1.4 3,-2.1 -4,-0.4 2,-0.2 -0.092 67.4 163.1-132.8 34.2 11.0 1.2 -8.6 44 158 A V T 3 S- 0 0 103 -3,-0.4 3,-0.1 1,-0.3 -3,-0.1 -0.409 85.2 -6.6 -60.2 119.6 8.3 -1.3 -7.6 45 159 A N T 3 S+ 0 0 155 -2,-0.2 -1,-0.3 1,-0.2 2,-0.1 0.601 103.4 137.1 63.5 14.0 10.1 -4.5 -6.5 46 160 A H S < S- 0 0 66 -3,-2.1 2,-1.5 1,-0.1 -1,-0.2 -0.416 70.4-101.3 -75.7 162.4 13.5 -3.0 -7.7 47 161 A H - 0 0 134 -2,-0.1 -24,-2.0 -3,-0.1 2,-0.4 -0.658 51.9-177.6 -89.8 82.5 16.5 -3.5 -5.6 48 162 A V E -B 22 0B 50 -2,-1.5 2,-0.6 -26,-0.2 -26,-0.2 -0.698 14.3-161.1 -90.0 129.0 16.6 -0.0 -4.0 49 163 A C E -B 21 0B 47 -28,-2.8 -28,-2.2 -2,-0.4 2,-0.7 -0.933 5.0-170.8-109.2 109.1 19.4 0.9 -1.6 50 164 A T E +B 20 0B 79 -2,-0.6 -30,-0.2 -30,-0.2 2,-0.2 -0.902 14.8 175.6-104.2 114.0 18.7 3.8 0.7 51 165 A D E -B 19 0B 64 -32,-2.1 -32,-2.3 -2,-0.7 2,-0.5 -0.556 32.8-113.8-106.4 169.3 21.8 5.0 2.6 52 166 A I E -B 18 0B 105 -34,-0.2 2,-0.1 -2,-0.2 -35,-0.1 -0.943 37.5-118.1-104.9 125.6 22.6 7.8 5.0 53 167 A C - 0 0 1 -36,-3.0 -37,-3.0 -2,-0.5 2,-0.2 -0.399 37.4-175.3 -65.1 134.4 25.1 10.3 3.5 54 168 A T - 0 0 59 -39,-0.2 -37,-0.1 3,-0.2 -1,-0.1 -0.530 45.0 -82.6-117.7-174.8 28.4 10.6 5.5 55 169 A E S S+ 0 0 144 -2,-0.2 3,-0.2 1,-0.1 -2,-0.0 0.868 126.7 43.4 -54.6 -39.1 31.6 12.7 5.4 56 170 A F S S+ 0 0 163 1,-0.2 2,-2.6 27,-0.0 -1,-0.1 0.982 101.0 61.8 -76.0 -61.8 32.9 10.4 2.7 57 171 A T S S+ 0 0 45 25,-0.1 2,-0.5 2,-0.0 -1,-0.2 -0.361 70.8 158.9 -74.8 68.1 30.1 9.8 0.2 58 172 A S + 0 0 38 -2,-2.6 25,-1.7 -3,-0.2 2,-0.3 -0.801 16.2 104.1 -96.7 129.7 29.6 13.4 -0.9 59 173 A G B -E 82 0D 8 -2,-0.5 -46,-2.8 23,-0.2 2,-0.3 -0.899 54.4 -77.1-171.8-156.6 27.9 14.1 -4.2 60 174 A I B -A 12 0A 58 21,-2.3 -28,-0.3 -48,-0.3 -48,-0.2 -0.882 40.5 -93.9-132.8 156.0 24.8 15.3 -6.1 61 175 A C - 0 0 1 -50,-2.0 -51,-1.7 -2,-0.3 -28,-0.2 -0.454 24.0-158.0 -70.3 137.1 21.4 14.0 -7.2 62 176 A D > + 0 0 4 -30,-3.2 3,-2.4 -2,-0.2 6,-0.3 0.327 43.6 135.1-100.2 4.2 21.3 12.6 -10.8 63 177 A C T 3 S+ 0 0 5 -31,-0.3 -54,-2.9 1,-0.3 -53,-0.2 -0.319 75.6 19.4 -56.2 130.8 17.6 13.0 -11.4 64 178 A G T 3 S+ 0 0 30 -56,-0.2 2,-1.1 1,-0.2 -1,-0.3 0.320 92.3 113.0 86.4 -9.1 17.1 14.4 -14.9 65 179 A D X - 0 0 56 -3,-2.4 3,-2.0 1,-0.2 4,-0.3 -0.822 50.3-169.6 -90.7 94.8 20.5 13.4 -16.0 66 180 A E G > S+ 0 0 109 -2,-1.1 3,-1.1 1,-0.3 -1,-0.2 0.740 78.8 65.8 -62.8 -25.2 19.3 10.8 -18.6 67 181 A E G 3 S+ 0 0 165 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 0.657 97.0 57.1 -68.1 -18.2 22.9 9.4 -19.0 68 182 A A G < S+ 0 0 0 -3,-2.0 -41,-2.7 -6,-0.3 -40,-0.4 0.521 103.2 63.2 -89.7 -7.2 22.8 8.2 -15.4 69 183 A W B < -D 26 0C 14 -3,-1.1 -43,-0.2 -4,-0.3 -44,-0.1 -0.927 56.6-157.5-129.8 145.2 19.7 6.0 -15.8 70 184 A N S S+ 0 0 108 -45,-2.8 -44,-0.1 -2,-0.3 -45,-0.1 0.637 87.0 42.8 -88.8 -19.9 18.6 3.0 -17.8 71 185 A S S S- 0 0 56 -46,-0.4 2,-0.3 -5,-0.0 -1,-0.0 -0.923 96.4 -97.1-124.0 151.5 14.9 3.8 -17.5 72 186 A P - 0 0 94 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.552 45.0-147.7 -64.9 125.5 12.9 7.1 -17.9 73 187 A L - 0 0 27 -2,-0.3 2,-0.5 -4,-0.0 -35,-0.1 -0.597 8.9-144.6 -94.2 157.5 12.4 8.5 -14.4 74 188 A H - 0 0 116 -2,-0.2 -32,-0.1 -35,-0.1 -33,-0.1 -0.849 27.1-127.9-125.1 94.0 9.4 10.5 -13.2 75 189 A C - 0 0 18 -2,-0.5 3,-0.3 1,-0.1 -37,-0.2 -0.041 5.7-146.8 -43.0 128.2 10.6 13.1 -10.6 76 190 A K S > S+ 0 0 94 -39,-2.0 3,-1.8 1,-0.2 -39,-0.2 0.840 99.5 60.7 -67.5 -34.9 8.6 13.0 -7.3 77 191 A A T 3 S+ 0 0 11 -41,-0.8 -74,-0.3 1,-0.3 -1,-0.2 0.817 94.5 64.8 -59.2 -31.0 9.1 16.8 -6.9 78 192 A E T 3 0 0 87 -3,-0.3 -1,-0.3 -76,-0.1 -2,-0.2 0.486 360.0 360.0 -71.9 -4.2 7.2 17.1 -10.2 79 193 A E < 0 0 125 -3,-1.8 -3,-0.1 -5,-0.1 -76,-0.1 0.167 360.0 360.0-104.7 360.0 4.1 15.6 -8.5 80 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 81 1 B K 0 0 83 0, 0.0 -21,-2.3 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 166.8 26.9 11.3 -8.8 82 2 B I B E 59 0D 19 -52,-1.5 -23,-0.2 -23,-0.2 -25,-0.1 -0.882 360.0 360.0-102.5 129.0 28.4 10.1 -5.5 83 3 B A 0 0 102 -25,-1.7 -24,-0.1 -2,-0.5 -1,-0.1 0.068 360.0 360.0-108.4 360.0 32.1 10.7 -4.9