==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 16-JUN-10 3NIJ . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR W.S.CHOI,B.-C.JEONG,M.-R.LEE,H.K.SONG . 82 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5203.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 14.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 115 A V 0 0 152 0, 0.0 76,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 158.2 10.6 24.1 -5.0 2 116 A H + 0 0 78 75,-0.1 75,-0.2 34,-0.1 76,-0.1 0.399 360.0 121.0 -96.4 -0.5 12.8 21.1 -5.8 3 117 A K + 0 0 105 74,-0.3 34,-0.0 1,-0.1 73,-0.0 -0.339 34.5 176.8 -61.3 144.0 11.4 20.9 -9.3 4 118 A H > - 0 0 25 3,-0.1 3,-1.9 -2,-0.0 -1,-0.1 -0.179 12.9-166.7-148.7 44.8 14.1 21.2 -12.1 5 119 A T T 3 S+ 0 0 105 1,-0.2 3,-0.1 4,-0.0 -2,-0.0 -0.002 71.1 5.0 -39.6 128.2 12.2 20.7 -15.4 6 120 A G T 3 S+ 0 0 93 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.552 121.0 68.4 74.2 8.4 14.5 20.1 -18.4 7 121 A R S < S- 0 0 150 -3,-1.9 -1,-0.2 56,-0.0 -3,-0.1 -0.937 89.7 -84.1-145.4 169.9 17.8 20.0 -16.5 8 122 A N - 0 0 65 -2,-0.3 56,-0.2 1,-0.1 54,-0.1 -0.352 31.2-129.6 -69.8 155.9 19.5 17.8 -14.0 9 123 A C + 0 0 15 54,-2.9 53,-0.2 1,-0.1 3,-0.1 0.991 31.2 176.5 -67.5 -65.5 18.8 18.1 -10.3 10 124 A G + 0 0 23 51,-1.7 2,-0.2 1,-0.2 52,-0.1 0.557 13.2 164.6 71.8 6.6 22.4 18.4 -9.1 11 125 A R - 0 0 90 49,-0.1 50,-2.3 -9,-0.1 2,-0.3 -0.409 36.8-127.1 -57.2 122.4 21.3 18.9 -5.4 12 126 A K B -A 60 0A 130 48,-0.2 48,-0.2 -2,-0.2 2,-0.2 -0.578 20.1-125.8 -74.4 133.0 24.3 18.4 -3.2 13 127 A F - 0 0 8 46,-2.8 2,-0.3 -2,-0.3 46,-0.1 -0.532 19.7-148.8 -76.5 145.4 23.8 15.9 -0.4 14 128 A K > - 0 0 132 -2,-0.2 3,-2.1 4,-0.1 39,-0.3 -0.817 35.8 -81.3-108.9 154.7 24.6 16.9 3.2 15 129 A I T 3 S+ 0 0 123 -2,-0.3 39,-0.2 1,-0.3 40,-0.1 -0.324 118.6 22.1 -53.7 128.0 25.9 14.6 6.0 16 130 A G T 3 S+ 0 0 48 37,-2.9 -1,-0.3 1,-0.3 38,-0.1 0.365 94.1 125.9 93.3 -3.5 23.0 12.7 7.5 17 131 A E < - 0 0 42 -3,-2.1 36,-3.2 37,-0.1 -1,-0.3 -0.542 64.5-106.9 -84.9 151.8 20.7 13.1 4.5 18 132 A P E -B 52 0B 33 0, 0.0 17,-0.5 0, 0.0 2,-0.4 -0.602 32.6-167.6 -78.8 138.8 19.0 10.1 2.7 19 133 A L E -B 51 0B 2 32,-2.3 32,-2.2 -2,-0.3 2,-0.5 -0.983 7.6-147.0-127.3 142.4 20.3 8.9 -0.7 20 134 A Y E +BC 50 33B 40 13,-2.7 13,-2.4 -2,-0.4 2,-0.3 -0.923 16.4 175.6-117.1 126.8 18.6 6.5 -3.1 21 135 A R E -B 49 0B 41 28,-2.2 28,-2.6 -2,-0.5 2,-0.4 -0.928 13.2-156.1-121.2 152.5 20.3 4.0 -5.5 22 136 A C E > -B 48 0B 7 9,-0.4 4,-2.7 -2,-0.3 26,-0.2 -0.977 10.8-151.8-132.7 121.5 18.6 1.4 -7.7 23 137 A H T 4 S+ 0 0 142 24,-2.1 -1,-0.1 -2,-0.4 25,-0.1 0.902 99.3 36.2 -54.6 -47.3 20.5 -1.7 -8.9 24 138 A E T 4 S+ 0 0 70 1,-0.1 -1,-0.2 23,-0.1 46,-0.1 0.921 123.4 39.4 -72.1 -49.1 18.3 -1.9 -12.1 25 139 A C T 4 S+ 0 0 1 45,-0.1 45,-2.7 44,-0.1 46,-0.4 0.823 98.1 87.1 -78.3 -33.8 17.8 1.8 -12.9 26 140 A G B < -D 69 0C 7 -4,-2.7 43,-0.2 43,-0.2 3,-0.1 -0.502 67.0-147.8 -72.2 131.9 21.3 3.0 -12.0 27 141 A C S S- 0 0 59 41,-2.0 2,-0.2 -2,-0.2 -1,-0.1 0.945 83.7 -8.2 -59.7 -53.0 24.0 2.9 -14.7 28 142 A D S > S- 0 0 87 40,-0.3 3,-1.5 -3,-0.0 -1,-0.1 -0.796 85.9 -87.7-134.2-175.5 26.6 2.3 -12.1 29 143 A D T 3 S+ 0 0 114 1,-0.3 -6,-0.0 -2,-0.2 -3,-0.0 0.412 119.1 64.3 -78.5 2.1 26.8 2.3 -8.3 30 144 A T T 3 S+ 0 0 44 53,-0.1 52,-1.8 51,-0.1 2,-0.6 0.429 75.8 107.2 -99.1 -2.6 27.6 6.0 -8.1 31 145 A C < + 0 0 1 -3,-1.5 -9,-0.4 50,-0.2 2,-0.3 -0.694 51.0 171.0 -86.6 118.4 24.2 7.0 -9.6 32 146 A V - 0 0 0 -2,-0.6 30,-3.4 28,-0.3 2,-0.3 -0.880 28.0-152.1-136.0 155.9 21.9 8.5 -7.0 33 147 A L B -C 20 0B 3 -13,-2.4 -13,-2.7 -2,-0.3 2,-0.1 -0.961 20.1-130.3-125.9 142.3 18.6 10.3 -6.2 34 148 A C >> - 0 0 4 -2,-0.3 4,-2.9 -15,-0.2 3,-1.0 -0.365 32.9-102.5 -82.5 172.6 17.7 12.7 -3.4 35 149 A I T 34 S+ 0 0 82 -17,-0.5 -1,-0.1 1,-0.3 -16,-0.1 0.785 122.2 53.8 -67.0 -28.6 14.6 12.3 -1.3 36 150 A H T 34 S+ 0 0 61 1,-0.1 41,-0.8 40,-0.1 -1,-0.3 0.653 118.1 35.4 -78.0 -15.7 12.8 15.1 -3.2 37 151 A C T <4 S+ 0 0 2 -3,-1.0 39,-2.0 39,-0.2 -2,-0.2 0.758 89.1 100.5-109.3 -38.1 13.4 13.3 -6.5 38 152 A F < - 0 0 24 -4,-2.9 3,-0.1 37,-0.2 37,-0.0 -0.344 52.8-165.6 -58.9 121.3 13.1 9.6 -5.7 39 153 A N > - 0 0 6 -2,-0.2 3,-1.9 1,-0.1 4,-0.4 -0.953 16.9-155.9-113.8 115.1 9.7 8.3 -6.8 40 154 A P G > S+ 0 0 77 0, 0.0 3,-1.5 0, 0.0 -1,-0.1 0.800 93.5 70.8 -56.8 -29.2 8.7 4.9 -5.4 41 155 A K G 3 S+ 0 0 164 1,-0.3 3,-0.4 2,-0.2 -3,-0.0 0.750 95.4 53.6 -56.7 -28.8 6.3 4.6 -8.4 42 156 A D G < S+ 0 0 32 -3,-1.9 -1,-0.3 1,-0.2 -4,-0.0 0.662 112.1 42.4 -78.8 -19.1 9.5 4.2 -10.6 43 157 A H X + 0 0 9 -3,-1.5 3,-1.9 -4,-0.4 -1,-0.2 -0.107 65.2 163.5-132.1 35.9 10.9 1.3 -8.6 44 158 A V T 3 S- 0 0 104 -3,-0.4 3,-0.1 1,-0.3 -3,-0.0 -0.399 85.5 -8.1 -60.2 123.1 8.2 -1.2 -7.6 45 159 A N T 3 S+ 0 0 158 1,-0.2 -1,-0.3 -2,-0.2 2,-0.1 0.578 104.7 136.2 58.3 12.7 10.0 -4.5 -6.6 46 160 A H S < S- 0 0 69 -3,-1.9 2,-1.3 1,-0.1 -1,-0.2 -0.336 70.7-100.1 -73.9 166.7 13.3 -3.0 -7.8 47 161 A H - 0 0 131 -3,-0.1 -24,-2.1 -2,-0.1 2,-0.4 -0.674 51.5-178.3 -96.2 82.7 16.4 -3.4 -5.7 48 162 A V E -B 22 0B 49 -2,-1.3 2,-0.6 -26,-0.2 -26,-0.2 -0.695 14.1-162.4 -91.4 128.4 16.5 -0.0 -4.0 49 163 A C E -B 21 0B 51 -28,-2.6 -28,-2.2 -2,-0.4 2,-0.6 -0.936 4.4-169.9-109.9 109.0 19.3 0.9 -1.6 50 164 A T E +B 20 0B 79 -2,-0.6 -30,-0.2 -30,-0.2 2,-0.2 -0.909 14.1 176.3-103.6 118.0 18.6 3.8 0.7 51 165 A D E -B 19 0B 65 -32,-2.2 -32,-2.3 -2,-0.6 2,-0.5 -0.604 32.4-116.3-109.3 167.8 21.7 5.0 2.6 52 166 A I E -B 18 0B 110 -34,-0.2 2,-0.1 -2,-0.2 -37,-0.1 -0.951 38.7-118.1-105.7 126.0 22.5 7.8 5.0 53 167 A C - 0 0 3 -36,-3.2 -37,-2.9 -2,-0.5 2,-0.2 -0.362 34.9-172.2 -67.1 137.8 25.1 10.2 3.6 54 168 A T - 0 0 62 -39,-0.2 -37,-0.1 3,-0.2 -1,-0.1 -0.453 43.2 -84.4-114.6-170.5 28.4 10.5 5.5 55 169 A E S S+ 0 0 132 -2,-0.2 3,-0.2 1,-0.1 -40,-0.1 0.889 126.8 41.2 -60.1 -40.9 31.5 12.7 5.4 56 170 A F S S+ 0 0 157 1,-0.2 2,-2.6 27,-0.0 -1,-0.1 0.946 102.4 63.5 -78.8 -52.6 33.0 10.4 2.7 57 171 A T S S+ 0 0 48 26,-0.1 2,-0.5 25,-0.1 -1,-0.2 -0.339 72.5 154.1 -76.9 62.0 30.1 9.6 0.4 58 172 A S + 0 0 64 -2,-2.6 2,-0.2 -3,-0.2 -44,-0.1 -0.814 15.7 105.9 -98.8 125.7 29.6 13.3 -0.7 59 173 A G - 0 0 9 -2,-0.5 -46,-2.8 23,-0.1 2,-0.3 -0.845 55.1 -73.7-166.7-156.4 28.0 14.1 -4.0 60 174 A I B -A 12 0A 61 21,-1.9 -28,-0.3 -48,-0.2 -48,-0.2 -0.886 40.8 -97.7-129.0 153.2 25.0 15.2 -6.1 61 175 A C - 0 0 1 -50,-2.3 -51,-1.7 -2,-0.3 -28,-0.2 -0.453 24.2-156.8 -68.5 138.0 21.6 14.0 -7.1 62 176 A D > + 0 0 3 -30,-3.4 3,-2.6 -53,-0.2 6,-0.2 0.351 42.9 136.3-100.6 2.6 21.5 12.5 -10.7 63 177 A C T 3 S+ 0 0 5 -31,-0.3 -54,-2.9 1,-0.3 -53,-0.2 -0.302 76.8 18.5 -53.0 126.1 17.8 13.0 -11.4 64 178 A G T 3 S+ 0 0 36 -56,-0.2 2,-0.9 1,-0.2 -1,-0.3 0.371 92.1 112.6 88.2 -5.8 17.4 14.3 -14.9 65 179 A D X - 0 0 53 -3,-2.6 3,-1.9 1,-0.1 -1,-0.2 -0.866 51.3-167.6 -92.2 98.5 20.9 13.3 -16.0 66 180 A E G > S+ 0 0 113 -2,-0.9 3,-1.1 1,-0.3 -1,-0.1 0.721 79.4 65.4 -65.7 -23.8 19.8 10.6 -18.5 67 181 A E G 3 S+ 0 0 179 1,-0.2 -1,-0.3 -3,-0.1 3,-0.0 0.433 97.4 57.9 -76.2 -0.0 23.3 9.1 -18.9 68 182 A A G < S+ 0 0 0 -3,-1.9 -41,-2.0 -6,-0.2 2,-0.3 0.432 104.7 59.3-102.4 -3.0 23.0 8.1 -15.2 69 183 A W B < -D 26 0C 12 -3,-1.1 -43,-0.2 -43,-0.2 -44,-0.1 -0.958 55.7-158.8-135.8 145.0 19.9 6.0 -15.7 70 184 A N S S+ 0 0 107 -45,-2.7 -44,-0.1 -2,-0.3 -45,-0.1 0.681 86.4 43.1 -90.7 -24.1 18.7 3.0 -17.8 71 185 A S S S- 0 0 54 -46,-0.4 2,-0.3 -29,-0.0 -1,-0.0 -0.889 96.5 -97.5-119.5 152.6 15.0 3.8 -17.5 72 186 A P - 0 0 94 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.558 44.1-147.4 -67.9 128.0 13.1 7.1 -17.8 73 187 A L - 0 0 28 -2,-0.3 2,-0.5 -48,-0.0 -35,-0.1 -0.583 8.3-143.6 -95.4 160.6 12.5 8.5 -14.3 74 188 A H - 0 0 114 -2,-0.2 -32,-0.1 -35,-0.1 -33,-0.1 -0.846 26.9-127.5-127.9 93.1 9.6 10.6 -13.1 75 189 A C > - 0 0 17 -2,-0.5 3,-0.7 1,-0.1 4,-0.5 -0.052 5.7-144.0 -42.9 125.8 10.8 13.2 -10.6 76 190 A K G > S+ 0 0 105 -39,-2.0 3,-1.0 1,-0.2 -39,-0.2 0.841 101.8 57.4 -62.3 -35.8 8.7 13.1 -7.3 77 191 A A G 3 S+ 0 0 19 -41,-0.8 -74,-0.3 1,-0.2 -1,-0.2 0.785 97.9 63.7 -63.2 -27.2 9.0 16.9 -7.0 78 192 A E G < 0 0 86 -3,-0.7 -1,-0.2 -76,-0.1 -2,-0.2 0.647 360.0 360.0 -75.5 -18.1 7.4 17.2 -10.5 79 193 A E < 0 0 146 -3,-1.0 -3,-0.1 -4,-0.5 -4,-0.0 0.312 360.0 360.0-102.7 360.0 4.1 15.6 -9.3 80 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 81 1 B H 0 0 74 0, 0.0 -21,-1.9 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 161.0 27.0 11.1 -8.6 82 2 B I 0 0 15 -52,-1.8 -23,-0.1 -23,-0.2 -25,-0.1 -0.665 360.0 360.0-110.5 165.9 28.3 9.9 -5.3 83 3 B A 0 0 94 -2,-0.2 -26,-0.1 -27,-0.1 -1,-0.1 0.951 360.0 360.0 -57.0 360.0 31.9 9.1 -4.0