==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 16-JUN-10 3NIT . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR W.S.CHOI,B.-C.JEONG,M.-R.LEE,H.K.SONG . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6406.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 47.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 13.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 16.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 105 A G 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 161.7 24.8 -3.0 -5.1 2 106 A S + 0 0 128 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.931 360.0 178.4-144.1 119.5 23.3 -0.2 -7.2 3 107 A I - 0 0 162 -2,-0.3 2,-0.6 4,-0.0 0, 0.0 -0.835 26.9-129.8-110.0 151.4 19.7 1.1 -7.2 4 108 A D > - 0 0 93 -2,-0.3 3,-1.1 1,-0.1 5,-0.1 -0.921 11.2-160.8-104.4 116.0 18.3 4.0 -9.3 5 109 A E T 3 S+ 0 0 194 -2,-0.6 -1,-0.1 1,-0.3 0, 0.0 0.689 86.8 65.3 -70.3 -20.8 16.4 6.4 -7.2 6 110 A S T 3 S+ 0 0 111 3,-0.0 -1,-0.3 2,-0.0 -2,-0.0 0.724 83.7 98.8 -71.1 -25.1 14.6 7.9 -10.2 7 111 A R S < S- 0 0 190 -3,-1.1 3,-0.2 1,-0.1 -4,-0.0 -0.237 88.0-116.9 -64.6 152.9 12.8 4.6 -10.8 8 112 A I > + 0 0 126 1,-0.2 3,-1.4 2,-0.1 2,-0.4 0.776 55.3 175.0 -59.5 -28.0 9.2 4.0 -9.6 9 113 A G T 3 - 0 0 49 1,-0.2 -1,-0.2 -5,-0.1 3,-0.1 -0.401 55.7 -34.2 67.4-113.5 10.8 1.3 -7.5 10 114 A D T 3 S+ 0 0 109 -2,-0.4 3,-0.5 -3,-0.2 -1,-0.2 0.086 92.4 118.8-136.3 20.7 8.4 -0.5 -5.1 11 115 A V S < S+ 0 0 114 -3,-1.4 -2,-0.1 1,-0.2 -1,-0.1 0.689 87.6 39.9 -64.2 -18.6 5.9 2.3 -4.1 12 116 A H S S+ 0 0 44 -4,-0.1 -1,-0.2 75,-0.1 75,-0.2 0.530 88.3 110.4-109.0 -11.8 3.1 0.3 -5.6 13 117 A K + 0 0 70 -3,-0.5 -3,-0.1 74,-0.2 34,-0.0 -0.385 36.3 174.8 -61.2 141.6 4.2 -3.2 -4.5 14 118 A H > - 0 0 23 3,-0.1 3,-2.0 -2,-0.1 -1,-0.1 -0.165 9.6-175.9-144.7 44.0 1.8 -4.7 -1.8 15 119 A T T 3 S+ 0 0 114 1,-0.3 3,-0.1 4,-0.0 -2,-0.0 -0.176 71.6 7.0 -54.1 124.7 3.1 -8.2 -1.2 16 120 A G T 3 S+ 0 0 92 1,-0.2 2,-0.3 58,-0.0 -1,-0.3 0.188 121.3 68.5 90.7 -16.6 0.9 -10.2 1.2 17 121 A R S < S- 0 0 148 -3,-2.0 -1,-0.2 1,-0.1 -3,-0.1 -0.803 89.1 -91.2-125.0 169.0 -1.9 -7.6 1.5 18 122 A N - 0 0 63 -2,-0.3 56,-0.2 1,-0.1 54,-0.1 -0.394 29.9-128.2 -73.6 159.6 -4.5 -6.1 -0.8 19 123 A C + 0 0 21 54,-2.4 53,-0.2 -2,-0.1 -1,-0.1 0.972 30.7 176.9 -73.2 -59.8 -3.8 -3.0 -2.9 20 124 A G + 0 0 25 51,-1.9 2,-0.2 1,-0.2 52,-0.1 0.639 12.8 167.9 63.8 18.7 -6.8 -0.9 -1.9 21 125 A R - 0 0 74 49,-0.1 50,-2.1 1,-0.1 2,-0.4 -0.457 34.6-125.7 -65.7 131.8 -5.6 2.1 -4.0 22 126 A K B -A 70 0A 110 48,-0.2 2,-0.3 -2,-0.2 48,-0.2 -0.681 21.8-123.9 -84.5 126.5 -8.4 4.7 -4.3 23 127 A F - 0 0 6 46,-1.9 2,-0.4 -2,-0.4 46,-0.3 -0.512 21.1-154.4 -72.7 129.4 -9.2 5.7 -7.9 24 128 A K > - 0 0 116 -2,-0.3 3,-2.3 1,-0.1 39,-0.2 -0.855 39.0 -79.5-101.8 143.8 -9.0 9.4 -8.7 25 129 A I T 3 S+ 0 0 123 -2,-0.4 39,-0.2 1,-0.2 -1,-0.1 -0.041 117.1 24.9 -41.0 129.8 -11.1 10.9 -11.5 26 130 A G T 3 S+ 0 0 41 37,-3.5 -1,-0.2 1,-0.4 38,-0.1 -0.031 91.5 120.6 102.8 -28.6 -9.5 10.3 -15.0 27 131 A E < - 0 0 48 -3,-2.3 36,-2.8 35,-0.1 -1,-0.4 -0.343 68.0-105.9 -70.1 146.0 -7.6 7.1 -14.0 28 132 A P E -B 62 0B 31 0, 0.0 17,-0.5 0, 0.0 2,-0.4 -0.551 26.3-158.2 -72.9 137.6 -8.3 3.8 -15.8 29 133 A L E -B 61 0B 15 32,-2.9 32,-2.5 -2,-0.2 2,-0.4 -0.978 9.7-153.7-111.9 130.1 -10.3 1.0 -14.0 30 134 A Y E +BC 60 43B 39 13,-2.5 13,-2.3 -2,-0.4 2,-0.3 -0.867 14.8 176.5-109.3 136.4 -9.8 -2.5 -15.3 31 135 A R E -B 59 0B 80 28,-1.9 28,-3.6 -2,-0.4 2,-0.4 -0.988 14.2-154.1-134.1 142.5 -12.4 -5.3 -15.0 32 136 A C E > -B 58 0B 8 9,-0.4 4,-2.3 -2,-0.3 26,-0.2 -0.981 8.6-152.7-121.2 126.1 -12.2 -8.9 -16.4 33 137 A H T 4 S+ 0 0 151 24,-2.3 -1,-0.1 -2,-0.4 25,-0.1 0.865 97.6 41.9 -62.9 -39.0 -15.3 -10.9 -17.2 34 138 A E T 4 S+ 0 0 71 23,-0.1 -1,-0.2 1,-0.1 46,-0.1 0.905 121.9 37.3 -74.4 -43.4 -13.7 -14.3 -16.6 35 139 A C T 4 S+ 0 0 3 45,-0.1 45,-3.2 44,-0.1 46,-0.4 0.812 96.8 83.9 -84.4 -34.6 -11.6 -13.4 -13.5 36 140 A G B < -D 79 0C 12 -4,-2.3 43,-0.2 43,-0.2 3,-0.1 -0.511 63.6-146.6 -80.5 140.2 -13.9 -11.1 -11.5 37 141 A C S S+ 0 0 69 41,-1.9 2,-0.2 -2,-0.2 -1,-0.1 0.983 81.3 1.4 -66.2 -62.5 -16.6 -12.4 -9.1 38 142 A D S > S- 0 0 89 40,-0.2 3,-1.9 0, 0.0 -1,-0.1 -0.742 90.5 -89.5-118.4 174.0 -19.2 -9.7 -9.6 39 143 A D T 3 S+ 0 0 123 1,-0.3 -6,-0.0 -2,-0.2 -2,-0.0 0.280 119.2 67.2 -69.9 15.4 -19.2 -6.5 -11.8 40 144 A T T 3 + 0 0 88 38,-0.1 2,-0.7 2,-0.0 -1,-0.3 0.396 68.1 109.2-112.2 -0.5 -17.5 -4.6 -8.9 41 145 A C < + 0 0 7 -3,-1.9 -9,-0.4 37,-0.1 2,-0.3 -0.708 51.0 174.3 -84.5 115.7 -14.1 -6.4 -8.9 42 146 A V - 0 0 13 -2,-0.7 30,-2.6 28,-0.3 2,-0.4 -0.837 26.4-151.1-129.5 155.7 -11.6 -3.9 -10.2 43 147 A L B -C 30 0B 3 -13,-2.3 -13,-2.5 -2,-0.3 2,-0.1 -0.973 18.3-130.8-127.5 142.8 -7.9 -3.4 -10.9 44 148 A C >> - 0 0 1 -2,-0.4 4,-2.9 -15,-0.2 3,-1.0 -0.417 32.5-103.0 -84.5 164.7 -5.8 -0.2 -11.0 45 149 A I T 34 S+ 0 0 68 -17,-0.5 -1,-0.1 1,-0.2 -16,-0.1 0.824 121.3 51.5 -55.1 -35.5 -3.3 0.7 -13.7 46 150 A H T 34 S+ 0 0 61 1,-0.1 41,-0.4 3,-0.0 -1,-0.2 0.694 118.4 36.0 -78.0 -20.5 -0.3 -0.3 -11.5 47 151 A C T <4 S+ 0 0 5 -3,-1.0 39,-1.5 39,-0.2 -2,-0.2 0.816 86.3 103.1-100.6 -44.0 -1.7 -3.7 -10.7 48 152 A F < - 0 0 25 -4,-2.9 3,-0.1 37,-0.1 37,-0.0 -0.223 53.3-163.9 -50.9 122.9 -3.5 -4.9 -13.9 49 153 A N > - 0 0 6 1,-0.1 3,-1.5 37,-0.0 4,-0.4 -0.939 15.0-156.6-117.4 109.8 -1.3 -7.4 -15.7 50 154 A P G > S+ 0 0 75 0, 0.0 3,-1.9 0, 0.0 4,-0.2 0.832 92.0 67.2 -55.5 -34.4 -2.2 -8.1 -19.3 51 155 A K G > S+ 0 0 141 1,-0.3 3,-1.0 2,-0.2 -3,-0.0 0.856 95.3 55.5 -51.8 -41.4 -0.4 -11.5 -19.0 52 156 A D G < S+ 0 0 30 -3,-1.5 -1,-0.3 1,-0.2 -4,-0.0 0.625 111.2 44.9 -66.3 -13.5 -3.1 -12.7 -16.6 53 157 A H G X + 0 0 8 -3,-1.9 3,-2.6 -4,-0.4 -1,-0.2 0.148 68.4 146.9-129.1 17.8 -5.9 -11.9 -19.0 54 158 A V T < S+ 0 0 106 -3,-1.0 3,-0.1 1,-0.3 -3,-0.0 -0.370 83.9 10.2 -53.6 127.4 -4.8 -13.2 -22.4 55 159 A N T 3 S+ 0 0 154 1,-0.3 -1,-0.3 -2,-0.1 2,-0.2 0.431 106.9 119.5 76.9 1.6 -7.9 -14.4 -24.2 56 160 A H S < S- 0 0 65 -3,-2.6 2,-1.1 -23,-0.0 -1,-0.3 -0.574 73.9-110.0 -92.4 159.6 -10.1 -12.8 -21.5 57 161 A H - 0 0 133 -2,-0.2 -24,-2.3 -3,-0.1 2,-0.4 -0.758 40.6-170.9 -89.6 93.1 -12.7 -10.1 -22.0 58 162 A V E -B 32 0B 55 -2,-1.1 2,-0.5 -26,-0.2 -26,-0.2 -0.712 6.6-159.9 -88.6 134.0 -11.2 -7.1 -20.3 59 163 A C E -B 31 0B 56 -28,-3.6 -28,-1.9 -2,-0.4 2,-0.4 -0.965 4.5-159.5-116.9 120.9 -13.3 -4.0 -19.9 60 164 A T E -B 30 0B 79 -2,-0.5 2,-0.3 -30,-0.2 -30,-0.2 -0.792 9.5-173.9-100.5 140.0 -11.6 -0.6 -19.3 61 165 A D E -B 29 0B 57 -32,-2.5 -32,-2.9 -2,-0.4 2,-0.5 -0.983 25.2-124.5-133.0 145.7 -13.3 2.4 -17.7 62 166 A I E -B 28 0B 120 -2,-0.3 2,-0.2 -34,-0.2 -35,-0.1 -0.757 35.2-120.5 -84.7 125.9 -12.4 6.0 -17.1 63 167 A C - 0 0 0 -36,-2.8 -37,-3.5 -2,-0.5 2,-0.2 -0.500 37.1-175.1 -67.0 131.6 -12.8 6.9 -13.4 64 168 A T > - 0 0 57 -39,-0.2 3,-0.7 -2,-0.2 -39,-0.1 -0.454 43.5 -91.0-113.7-170.3 -15.3 9.8 -12.8 65 169 A E T 3 S+ 0 0 156 1,-0.2 -2,-0.0 -2,-0.2 -40,-0.0 0.728 126.4 54.7 -74.5 -22.3 -16.5 11.8 -9.8 66 170 A F T 3 S+ 0 0 172 2,-0.0 2,-0.9 1,-0.0 -1,-0.2 0.421 84.3 106.5 -88.5 -1.9 -19.3 9.3 -9.3 67 171 A T < - 0 0 43 -3,-0.7 2,-0.8 2,-0.0 -42,-0.1 -0.719 45.7-177.8 -86.6 105.2 -16.7 6.4 -9.1 68 172 A S + 0 0 118 -2,-0.9 2,-0.4 -46,-0.0 -44,-0.1 -0.876 31.5 145.3 -99.4 100.4 -16.2 5.2 -5.5 69 173 A G - 0 0 13 -2,-0.8 -46,-1.9 -46,-0.3 2,-0.3 -0.992 37.3-172.3-146.3 143.9 -13.5 2.6 -5.9 70 174 A I B -A 22 0A 80 -2,-0.4 -28,-0.3 -48,-0.2 -48,-0.2 -0.982 43.5 -97.6-126.6 147.6 -10.5 0.9 -4.4 71 175 A C - 0 0 0 -50,-2.1 -51,-1.9 -2,-0.3 -28,-0.2 -0.367 23.2-157.6 -64.9 136.0 -8.3 -1.6 -6.2 72 176 A D > + 0 0 27 -30,-2.6 3,-2.2 -53,-0.2 6,-0.2 0.292 43.5 136.1 -98.0 5.3 -9.0 -5.3 -5.5 73 177 A C T 3 S+ 0 0 4 1,-0.3 -54,-2.4 -31,-0.2 -53,-0.2 -0.382 76.1 16.0 -57.8 122.1 -5.6 -6.7 -6.4 74 178 A G T 3 S+ 0 0 42 -56,-0.2 2,-0.8 1,-0.2 -1,-0.3 0.418 91.1 116.9 92.2 -1.8 -4.6 -9.2 -3.8 75 179 A D X - 0 0 48 -3,-2.2 3,-1.9 1,-0.1 4,-0.3 -0.872 50.4-163.8 -95.5 101.8 -8.0 -9.7 -2.3 76 180 A E T 3 S+ 0 0 153 -2,-0.8 3,-0.2 1,-0.3 -1,-0.1 0.538 80.4 65.1 -73.9 -7.8 -8.6 -13.3 -3.1 77 181 A E T 3 S+ 0 0 162 1,-0.2 -1,-0.3 -3,-0.0 3,-0.1 0.466 99.1 56.1 -88.9 -0.7 -12.3 -13.3 -2.5 78 182 A A S < S+ 0 0 7 -3,-1.9 -41,-1.9 -6,-0.2 2,-0.4 0.530 102.6 62.1-102.1 -11.6 -12.7 -10.9 -5.5 79 183 A W B -D 36 0C 19 -4,-0.3 -43,-0.2 -3,-0.2 -1,-0.1 -0.959 57.0-158.3-128.9 134.4 -11.0 -13.1 -8.1 80 184 A N S S+ 0 0 113 -45,-3.2 -44,-0.1 -2,-0.4 -1,-0.1 0.767 88.8 39.4 -74.8 -28.7 -11.7 -16.6 -9.5 81 185 A S S S- 0 0 53 -46,-0.4 2,-0.2 -29,-0.0 -1,-0.0 -0.900 97.1 -99.7-120.1 148.3 -8.1 -17.1 -10.6 82 186 A P - 0 0 85 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.502 42.7-144.8 -64.1 135.7 -4.9 -16.1 -8.8 83 187 A L - 0 0 37 -2,-0.2 2,-0.5 -4,-0.1 -35,-0.0 -0.603 7.5-138.1-101.2 163.4 -3.5 -12.8 -10.2 84 188 A H - 0 0 113 -2,-0.2 -32,-0.2 -35,-0.1 -33,-0.1 -0.897 26.5-131.5-125.0 97.3 0.1 -11.7 -10.7 85 189 A C > - 0 0 15 -2,-0.5 3,-0.6 1,-0.1 4,-0.3 -0.161 4.5-142.0 -52.4 137.8 0.4 -8.1 -9.7 86 190 A K G > S+ 0 0 92 -39,-1.5 3,-1.7 1,-0.2 -39,-0.2 0.820 98.6 66.9 -72.7 -32.5 2.3 -6.0 -12.3 87 191 A A G 3 S+ 0 0 17 -41,-0.4 -1,-0.2 1,-0.3 -74,-0.2 0.724 92.4 63.0 -61.7 -21.6 4.1 -4.0 -9.6 88 192 A E G < 0 0 78 -3,-0.6 -1,-0.3 -41,-0.1 -2,-0.2 0.719 360.0 360.0 -73.6 -23.4 5.9 -7.3 -8.8 89 193 A E < 0 0 127 -3,-1.7 -3,-0.0 -4,-0.3 -4,-0.0 -0.193 360.0 360.0 -79.6 360.0 7.4 -7.2 -12.3