==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 06-MAY-98 1NK2 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.M.GRUSCHUS,D.H.H.TSAO,L.-H.WANG,M.NIRENBERG,J.A.FERRETTI . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7364.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 50.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 101 P A 0 0 150 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 159.8 -20.8 -1.5 -25.9 2 102 P S + 0 0 116 1,-0.0 3,-0.1 0, 0.0 0, 0.0 -0.863 360.0 99.2-178.3 136.9 -18.2 0.2 -23.6 3 103 P D S S- 0 0 147 -2,-0.2 2,-0.5 1,-0.0 -1,-0.0 0.067 79.8-106.9 170.0 -38.3 -18.2 1.5 -20.0 4 104 P G - 0 0 67 2,-0.0 -1,-0.0 0, 0.0 0, 0.0 -0.836 63.5 -68.3 116.9 -90.3 -16.4 -1.3 -18.0 5 105 P L - 0 0 108 -2,-0.5 2,-1.3 2,-0.1 0, 0.0 -0.909 56.3 -65.4 170.9 149.4 -19.1 -3.0 -16.0 6 106 P P S S+ 0 0 118 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.585 75.2 142.8 -50.3 92.5 -21.6 -2.6 -13.1 7 107 P N + 0 0 127 -2,-1.3 -2,-0.1 2,-0.1 0, 0.0 -0.987 22.5 160.6-141.6 146.5 -19.0 -2.2 -10.3 8 108 P K - 0 0 184 -2,-0.3 -1,-0.0 2,-0.0 0, 0.0 -0.398 31.2-171.3-157.6 54.9 -19.2 0.1 -7.2 9 109 P K - 0 0 164 1,-0.1 2,-0.4 2,-0.0 -2,-0.1 -0.032 13.7-141.0 -84.9 168.4 -16.7 -1.5 -4.9 10 110 P R - 0 0 186 2,-0.0 2,-0.8 0, 0.0 -1,-0.1 -0.922 16.1-179.4-144.2 101.0 -15.9 -0.8 -1.2 11 111 P K - 0 0 185 -2,-0.4 2,-0.3 3,-0.0 3,-0.0 -0.875 12.3-178.6-105.0 95.9 -12.5 -0.8 0.6 12 112 P R - 0 0 213 -2,-0.8 -2,-0.0 1,-0.1 2,-0.0 -0.699 59.2 -71.5 -81.2 146.6 -13.2 0.0 4.2 13 113 P R - 0 0 217 -2,-0.3 2,-1.2 1,-0.2 -1,-0.1 -0.232 53.5-155.8 -59.7 117.9 -9.9 0.2 6.1 14 114 P V - 0 0 90 -2,-0.0 -1,-0.2 -3,-0.0 2,-0.0 -0.465 19.8-168.9-107.1 58.8 -9.1 -3.5 6.1 15 115 P L - 0 0 112 -2,-1.2 2,-0.3 1,-0.1 3,-0.0 -0.224 15.7-142.7 -77.1 136.1 -6.8 -3.5 9.1 16 116 P F - 0 0 33 1,-0.1 -1,-0.1 36,-0.1 5,-0.1 -0.659 36.1 -95.5 -90.3 145.8 -4.6 -6.5 10.2 17 117 P T > - 0 0 81 -2,-0.3 4,-4.3 29,-0.2 5,-0.3 -0.289 33.5-110.6 -68.1 147.5 -4.2 -7.2 14.0 18 118 P K H > S+ 0 0 181 1,-0.3 4,-4.1 2,-0.2 -1,-0.1 0.826 125.6 54.5 -44.0 -37.2 -1.1 -5.7 15.7 19 119 P A H > S+ 0 0 48 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.990 111.4 41.2 -53.5 -65.3 -0.0 -9.3 15.9 20 120 P Q H > S+ 0 0 33 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.894 117.5 49.8 -48.2 -49.6 -0.5 -9.8 12.1 21 121 P T H X S+ 0 0 36 -4,-4.3 4,-4.6 2,-0.2 -1,-0.2 0.959 108.0 53.9 -49.1 -55.8 1.1 -6.3 11.8 22 122 P Y H X S+ 0 0 98 -4,-4.1 4,-4.5 1,-0.3 -2,-0.2 0.886 110.9 44.0 -53.2 -46.1 4.0 -7.4 14.1 23 123 P E H X S+ 0 0 43 -4,-2.6 4,-3.2 2,-0.2 -1,-0.3 0.858 116.1 48.8 -66.2 -40.1 4.7 -10.5 11.8 24 124 P L H X S+ 0 0 0 -4,-2.4 4,-2.4 -5,-0.3 -2,-0.2 0.936 115.4 43.6 -61.0 -48.7 4.3 -8.1 8.8 25 125 P E H X S+ 0 0 90 -4,-4.6 4,-5.3 2,-0.2 5,-0.3 0.982 114.4 52.1 -53.2 -56.1 6.7 -5.6 10.5 26 126 P R H X S+ 0 0 109 -4,-4.5 4,-1.1 1,-0.3 5,-0.3 0.919 111.3 44.3 -39.5 -62.0 8.9 -8.6 11.4 27 127 P R H X S+ 0 0 56 -4,-3.2 4,-1.6 1,-0.2 -1,-0.3 0.826 121.3 41.5 -66.8 -30.5 9.0 -9.9 7.8 28 128 P F H < S+ 0 0 12 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.934 109.9 55.6 -69.7 -50.8 9.7 -6.2 6.6 29 129 P R H < S+ 0 0 169 -4,-5.3 -2,-0.2 1,-0.3 -3,-0.2 0.619 122.0 32.2 -62.3 -12.0 12.1 -5.3 9.5 30 130 P Q H < S+ 0 0 117 -4,-1.1 2,-0.3 -5,-0.3 -1,-0.3 0.729 128.9 25.3-102.7 -43.3 14.1 -8.4 8.3 31 131 P Q < - 0 0 81 -4,-1.6 -1,-0.3 -5,-0.3 3,-0.1 -0.995 46.1-164.1-151.7 128.7 13.4 -8.4 4.6 32 132 P R S S+ 0 0 121 -2,-0.3 2,-0.3 1,-0.2 29,-0.1 0.701 85.1 32.7 -79.3 -27.9 12.5 -5.9 1.8 33 133 P Y - 0 0 147 -5,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.984 68.0-168.3-158.7 114.5 11.4 -8.4 -0.8 34 134 P L - 0 0 17 -2,-0.3 2,-0.2 -3,-0.1 23,-0.0 -0.888 20.1-133.2-122.9 136.1 9.7 -11.9 -0.4 35 135 P S >> - 0 0 90 -2,-0.3 4,-2.1 1,-0.1 3,-0.9 -0.595 41.8-106.8 -81.1 155.8 8.9 -14.9 -2.8 36 136 P A H 3> S+ 0 0 46 1,-0.2 4,-4.7 2,-0.2 5,-0.5 0.901 115.3 56.5 -59.3 -49.9 5.3 -16.0 -2.3 37 137 P P H 3> S+ 0 0 98 0, 0.0 4,-0.5 0, 0.0 -1,-0.2 0.792 113.3 44.5 -57.9 -28.9 6.0 -19.4 -0.3 38 138 P E H X> S+ 0 0 80 -3,-0.9 4,-0.9 2,-0.1 3,-0.8 0.980 122.1 36.8 -53.9 -71.4 7.9 -17.3 2.3 39 139 P R H >X S+ 0 0 42 -4,-2.1 4,-2.8 1,-0.3 3,-0.5 0.799 111.3 56.2 -69.0 -38.7 5.2 -14.6 2.4 40 140 P E H 3X S+ 0 0 102 -4,-4.7 4,-2.2 1,-0.2 -1,-0.3 0.894 103.9 59.2 -52.8 -39.6 2.0 -16.7 2.0 41 141 P H H S+ 0 0 3 -4,-2.8 5,-1.2 1,-0.2 4,-0.4 0.828 113.6 46.6 -57.3 -32.4 -0.2 -14.8 5.3 44 144 P S H <5S+ 0 0 75 -4,-2.2 -2,-0.2 3,-0.2 -1,-0.2 0.895 111.4 48.1 -73.7 -44.9 -0.8 -18.3 6.7 45 145 P L H <5S+ 0 0 126 -4,-2.1 -2,-0.2 1,-0.2 -3,-0.1 0.896 122.7 32.5 -67.3 -42.8 0.5 -17.6 10.3 46 146 P I T <5S- 0 0 11 -4,-2.2 -1,-0.2 -26,-0.1 -29,-0.2 0.505 112.7-123.9-101.8 -13.0 -1.4 -14.4 10.8 47 147 P R T 5 + 0 0 212 -4,-0.4 -3,-0.2 -5,-0.4 2,-0.2 0.767 63.0 132.6 82.1 34.7 -4.2 -15.8 8.6 48 148 P L < - 0 0 20 -5,-1.2 -1,-0.3 -6,-0.3 -2,-0.1 -0.555 65.8 -94.1 -96.3 170.0 -4.4 -13.0 6.0 49 149 P T >> - 0 0 85 -2,-0.2 3,-2.8 1,-0.1 4,-1.0 -0.757 41.1-113.6 -91.2 139.7 -4.5 -13.5 2.1 50 150 P P H 3> S+ 0 0 37 0, 0.0 4,-3.4 0, 0.0 5,-0.1 0.758 118.2 53.7 -56.0 -33.9 -0.9 -13.2 0.6 51 151 P T H 3> S+ 0 0 83 2,-0.2 4,-3.8 1,-0.2 5,-0.4 0.898 103.4 57.9 -57.3 -37.6 -1.7 -9.9 -1.3 52 152 P Q H <> S+ 0 0 58 -3,-2.8 4,-0.9 2,-0.2 -1,-0.2 0.862 113.4 40.6 -68.5 -28.5 -2.9 -8.6 2.2 53 153 P V H >X S+ 0 0 0 -4,-1.0 4,-2.4 2,-0.2 3,-0.9 0.981 117.9 45.9 -64.5 -70.3 0.8 -9.5 3.3 54 154 P K H 3X S+ 0 0 58 -4,-3.4 4,-4.0 1,-0.3 -2,-0.2 0.853 112.4 50.7 -33.9 -58.6 2.4 -8.2 -0.0 55 155 P I H 3X S+ 0 0 68 -4,-3.8 4,-3.0 2,-0.3 -1,-0.3 0.831 110.1 48.7 -60.2 -39.3 0.4 -4.9 0.0 56 156 P W H X S+ 0 0 91 -4,-4.0 4,-1.2 1,-0.2 3,-0.5 0.987 108.4 55.2 -52.4 -58.1 4.5 -2.7 -0.7 59 159 P N H 3X S+ 0 0 109 -4,-3.0 4,-1.0 1,-0.3 -1,-0.2 0.774 108.4 50.2 -55.8 -25.6 3.2 0.1 1.7 60 160 P H H 3X S+ 0 0 45 -4,-0.9 4,-2.3 -3,-0.3 -1,-0.3 0.910 100.6 57.1 -79.8 -42.9 6.4 -0.1 3.8 61 161 P R H X S+ 0 0 155 -4,-1.7 4,-1.2 1,-0.2 3,-0.6 0.867 104.6 56.8 -55.4 -47.5 9.5 9.4 2.5 67 167 P A H 3X S+ 0 0 55 -4,-1.6 4,-0.7 -3,-0.3 3,-0.3 0.876 106.6 51.7 -49.9 -37.7 10.2 9.4 6.3 68 168 P Q H 3< S+ 0 0 128 -4,-1.3 5,-0.3 1,-0.3 -1,-0.2 0.691 97.0 64.3 -80.6 -23.2 13.8 10.0 5.3 69 169 P N H