==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 06-MAY-98 1NK3 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.M.GRUSCHUS,D.H.H.TSAO,L.-H.WANG,M.NIRENBERG,J.A.FERRETTI . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5916.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 68.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 100 P K 0 0 249 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 91.7 -19.5 -4.9 -14.8 2 101 P K - 0 0 148 1,-0.1 2,-0.7 3,-0.0 0, 0.0 -0.541 360.0-127.7 -77.5 146.7 -17.8 -4.7 -11.4 3 102 P R - 0 0 223 -2,-0.2 -1,-0.1 1,-0.1 3,-0.1 -0.290 41.4-105.9 -92.4 51.2 -17.2 -1.0 -10.5 4 103 P K - 0 0 176 -2,-0.7 -1,-0.1 1,-0.1 3,-0.1 0.851 44.6-160.8 31.8 66.8 -13.4 -1.5 -9.6 5 104 P R - 0 0 189 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 -0.479 30.6 -99.8 -69.0 155.4 -14.1 -1.2 -5.9 6 105 P R - 0 0 197 -3,-0.1 2,-0.4 1,-0.0 -1,-0.1 -0.329 41.7-153.3 -66.5 167.4 -10.8 -0.4 -4.4 7 106 P V - 0 0 91 -3,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.984 11.2-170.4-144.1 132.3 -9.2 -3.5 -2.9 8 107 P L - 0 0 121 -2,-0.4 2,-0.3 0, 0.0 3,-0.1 -0.790 18.1-132.0-120.5 164.6 -6.7 -3.6 -0.0 9 108 P F - 0 0 41 -2,-0.3 -2,-0.0 1,-0.1 32,-0.0 -0.746 36.4 -93.2-110.2 156.9 -4.8 -6.6 1.2 10 109 P T > - 0 0 84 -2,-0.3 4,-2.3 1,-0.2 5,-0.2 -0.305 39.9-112.2 -63.2 158.8 -4.6 -7.6 4.9 11 110 P K H > S+ 0 0 183 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.767 123.1 54.4 -62.7 -23.0 -1.5 -6.0 6.4 12 111 P A H > S+ 0 0 52 2,-0.2 4,-1.2 3,-0.1 -1,-0.2 0.865 107.4 47.9 -74.4 -35.9 -0.2 -9.6 6.7 13 112 P Q H >> S+ 0 0 37 1,-0.2 4,-1.3 2,-0.2 3,-1.2 0.988 113.9 48.4 -60.6 -57.3 -0.8 -10.1 2.9 14 113 P T H 3X S+ 0 0 36 -4,-2.3 4,-2.6 1,-0.3 -1,-0.2 0.708 105.7 59.6 -50.0 -35.4 1.1 -6.7 2.3 15 114 P Y H 3X S+ 0 0 110 -4,-1.2 4,-0.6 1,-0.2 -1,-0.3 0.850 105.7 45.8 -68.2 -36.9 3.9 -7.8 4.6 16 115 P E H - 0 0 56 -2,-0.4 4,-2.1 1,-0.1 5,-0.2 -0.356 32.2 -99.6 -85.7 173.7 9.1 -14.9 -12.3 29 128 P A H > S+ 0 0 62 1,-0.2 4,-1.5 2,-0.2 -1,-0.1 0.881 122.2 41.3 -64.3 -33.0 5.7 -16.5 -13.1 30 129 P P H 4 S+ 0 0 101 0, 0.0 4,-0.4 0, 0.0 -1,-0.2 0.911 116.5 47.7 -78.9 -41.0 6.2 -19.5 -10.7 31 130 P E H >> S+ 0 0 67 1,-0.2 4,-1.1 2,-0.2 3,-0.8 0.914 115.3 45.5 -55.5 -53.8 7.7 -17.4 -7.8 32 131 P R H 3X S+ 0 0 54 -4,-2.1 4,-1.5 1,-0.2 -1,-0.2 0.825 107.2 54.5 -70.2 -31.2 5.0 -14.8 -8.0 33 132 P E H 3X S+ 0 0 115 -4,-1.5 4,-1.0 1,-0.2 -1,-0.2 0.561 105.2 59.9 -82.0 2.2 1.9 -17.1 -8.3 34 133 P H H <> S+ 0 0 124 -3,-0.8 4,-1.5 -4,-0.4 -2,-0.2 0.845 103.9 45.5 -89.4 -38.6 3.3 -18.8 -5.0 35 134 P L H X S+ 0 0 13 -4,-1.1 4,-1.7 1,-0.2 6,-0.4 0.894 113.3 53.8 -66.4 -35.6 3.1 -15.6 -2.9 36 135 P A H X>S+ 0 0 2 -4,-1.5 4,-1.2 1,-0.2 5,-0.9 0.934 112.2 43.3 -63.7 -40.1 -0.3 -15.2 -4.5 37 136 P S H <5S+ 0 0 84 -4,-1.0 -1,-0.2 3,-0.2 -2,-0.2 0.704 109.5 55.4 -84.0 -9.7 -1.2 -18.8 -3.3 38 137 P L H <5S+ 0 0 124 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.931 121.0 28.4 -78.5 -46.3 0.2 -18.5 0.3 39 138 P I H <5S- 0 0 26 -4,-1.7 -2,-0.2 -5,-0.1 -3,-0.1 0.606 111.7-119.1 -88.3 -16.9 -1.8 -15.4 1.3 40 139 P R T <5 + 0 0 221 -4,-1.2 -3,-0.2 -5,-0.3 -4,-0.1 0.640 67.8 132.7 85.5 22.9 -4.7 -16.3 -1.1 41 140 P L < - 0 0 18 -5,-0.9 -1,-0.3 -6,-0.4 -2,-0.1 -0.478 63.6-104.5 -90.0 173.7 -4.6 -13.2 -3.3 42 141 P T > - 0 0 82 -2,-0.1 4,-1.2 1,-0.1 3,-0.2 -0.454 31.5-104.9 -91.8 173.4 -4.7 -14.1 -7.1 43 142 P P H > S+ 0 0 35 0, 0.0 4,-2.0 0, 0.0 3,-0.3 0.902 119.7 50.7 -68.7 -45.7 -1.5 -13.8 -9.2 44 143 P T H > S+ 0 0 89 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.791 104.7 59.3 -67.5 -16.2 -2.4 -10.6 -11.1 45 144 P Q H > S+ 0 0 60 -3,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.934 112.4 40.2 -74.8 -31.2 -3.1 -9.0 -7.6 46 145 P V H >X S+ 0 0 0 -4,-1.2 4,-1.6 -3,-0.3 3,-0.6 0.993 112.5 53.0 -71.7 -62.1 0.6 -9.8 -6.6 47 146 P K H 3X S+ 0 0 70 -4,-2.0 4,-1.9 1,-0.2 -1,-0.2 0.794 110.3 51.4 -38.9 -42.6 2.3 -8.8 -10.1 48 147 P I H 3X S+ 0 0 70 -4,-1.6 4,-2.1 1,-0.2 -1,-0.2 0.902 104.9 50.8 -72.4 -42.9 0.5 -5.4 -9.8 49 148 P W H X S+ 0 0 111 -4,-1.4 4,-1.2 -5,-0.3 3,-0.7 0.887 114.2 53.9 -75.4 -41.5 13.0 5.2 -7.9 59 158 P R H 3X S+ 0 0 143 -4,-1.5 4,-1.0 -5,-0.3 -1,-0.2 0.744 99.6 65.7 -65.1 -20.8 10.7 8.2 -8.3 60 159 P A H 3< S+ 0 0 53 -4,-0.5 -1,-0.2 1,-0.2 -2,-0.2 0.889 105.6 41.8 -69.9 -33.0 11.2 8.9 -4.5 61 160 P Q H << S+ 0 0 169 -4,-0.7 -1,-0.2 -3,-0.7 -2,-0.2 0.726 105.1 61.3 -85.3 -22.1 14.9 9.7 -5.1 62 161 P N H < 0 0 151 -4,-1.2 -1,-0.2 1,-0.1 -2,-0.2 0.817 360.0 360.0 -68.5 -25.4 14.3 11.7 -8.3 63 162 P E < 0 0 192 -4,-1.0 -2,-0.2 -5,-0.2 -3,-0.1 0.990 360.0 360.0 -68.5 360.0 12.3 13.9 -5.8