==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE 24-FEB-98 3NLA . COMPND 2 MOLECULE: ANTIFREEZE PROTEIN RD3 TYPE III; . SOURCE 2 ORGANISM_SCIENTIFIC: LYCODICHTHYS DEARBORNI; . AUTHOR K.MIURA,S.OHGIYA,T.HOSHINO,N.NEMOTO,K.HIKICHI,S.TSUDA . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4936.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 52.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 175 0, 0.0 2,-0.5 0, 0.0 26,-0.0 0.000 360.0 360.0 360.0 52.4 -9.9 11.4 -8.0 2 2 A K - 0 0 170 1,-0.1 25,-0.2 24,-0.1 2,-0.1 -0.487 360.0-135.8 -66.6 115.6 -6.6 9.5 -8.2 3 3 A A - 0 0 34 -2,-0.5 2,-0.3 23,-0.2 23,-0.3 -0.419 18.6-153.9 -71.6 147.3 -7.0 6.5 -5.9 4 4 A S E -A 25 0A 2 21,-4.7 21,-2.9 29,-0.1 2,-0.4 -0.927 27.7 -95.9-123.9 148.8 -4.0 5.7 -3.7 5 5 A V E -A 24 0A 6 27,-1.7 50,-2.2 -2,-0.3 2,-0.6 -0.431 44.9-176.2 -62.5 116.6 -2.8 2.4 -2.2 6 6 A V E -B 54 0B 4 17,-2.1 48,-0.3 -2,-0.4 17,-0.2 -0.894 32.0-120.4-121.0 105.9 -4.3 2.4 1.4 7 7 A A E -B 53 0B 10 46,-2.1 46,-3.0 -2,-0.6 15,-0.1 -0.140 36.3-179.0 -42.6 104.5 -3.3 -0.6 3.6 8 8 A N + 0 0 62 44,-0.3 44,-1.8 13,-0.3 -1,-0.1 0.983 60.9 53.1 -75.7 -70.8 -6.8 -2.0 4.3 9 9 A Q S S- 0 0 141 42,-0.2 2,-0.5 1,-0.1 44,-0.2 -0.362 103.3 -99.0 -65.0 143.3 -6.2 -5.0 6.5 10 10 A L + 0 0 104 41,-0.1 41,-0.2 42,-0.1 -1,-0.1 -0.476 53.1 174.4 -65.8 114.1 -4.1 -4.2 9.6 11 11 A I B -C 49 0C 11 38,-1.9 38,-1.8 -2,-0.5 4,-0.1 -0.981 19.7-149.1-128.8 128.3 -0.6 -5.3 8.8 12 12 A P - 0 0 69 0, 0.0 3,-0.3 0, 0.0 33,-0.3 0.235 37.4 -81.1 -71.8-158.4 2.6 -4.8 10.9 13 13 A I S S+ 0 0 53 1,-0.2 33,-0.2 33,-0.1 3,-0.1 -0.280 105.9 46.3 -99.0-170.4 6.0 -4.3 9.4 14 14 A N S S+ 0 0 115 31,-1.9 2,-0.6 1,-0.2 -1,-0.2 0.746 86.2 119.7 49.4 20.3 8.5 -6.9 8.1 15 15 A T - 0 0 46 -3,-0.3 30,-0.4 30,-0.2 -1,-0.2 -0.868 65.2-135.7-118.7 102.1 5.5 -8.4 6.3 16 16 A A - 0 0 49 -2,-0.6 28,-0.2 28,-0.1 2,-0.2 -0.304 25.0-148.9 -54.7 124.1 5.8 -8.6 2.5 17 17 A L - 0 0 28 26,-1.6 25,-2.8 23,-0.2 26,-0.5 -0.545 13.9-168.3 -94.1 163.4 2.5 -7.4 1.1 18 18 A T - 0 0 51 23,-0.2 -1,-0.1 -2,-0.2 3,-0.0 -0.489 44.7 -72.5-130.5-157.8 0.9 -8.5 -2.2 19 19 A L S > S+ 0 0 99 1,-0.2 3,-2.4 2,-0.2 -2,-0.0 0.927 127.2 57.1 -72.0 -42.6 -2.0 -7.5 -4.5 20 20 A I T 3 S+ 0 0 127 1,-0.3 -1,-0.2 3,-0.0 -3,-0.0 0.822 107.1 51.2 -58.6 -26.8 -4.7 -8.8 -2.1 21 21 A M T 3 S+ 0 0 65 -13,-0.1 2,-0.5 1,-0.1 -1,-0.3 0.235 97.5 83.0 -94.5 16.0 -3.2 -6.4 0.5 22 22 A M < + 0 0 27 -3,-2.4 2,-0.6 -15,-0.1 -15,-0.1 -0.925 52.3 174.1-123.6 111.6 -3.3 -3.5 -1.9 23 23 A K - 0 0 100 -2,-0.5 -17,-2.1 -17,-0.2 2,-1.0 -0.930 27.6-138.2-119.4 114.5 -6.6 -1.5 -2.3 24 24 A A E +A 5 0A 70 -2,-0.6 2,-0.3 -19,-0.2 -19,-0.2 -0.530 35.1 174.0 -70.7 103.6 -6.6 1.7 -4.4 25 25 A E E -A 4 0A 89 -21,-2.9 -21,-4.7 -2,-1.0 2,-1.3 -0.825 36.4-124.6-112.2 152.5 -8.7 4.1 -2.4 26 26 A V + 0 0 89 -2,-0.3 2,-0.3 -23,-0.3 -23,-0.2 -0.641 62.2 124.3 -95.3 82.8 -9.4 7.8 -3.1 27 27 A V - 0 0 57 -2,-1.3 -2,-0.1 2,-0.2 -23,-0.0 -0.951 54.8 -64.2-137.1 158.0 -8.3 9.4 0.2 28 28 A T S S+ 0 0 120 -2,-0.3 2,-0.2 2,-0.1 26,-0.1 -0.704 102.2 36.1 -95.8 148.9 -5.8 12.2 1.2 29 29 A P S S- 0 0 48 0, 0.0 -2,-0.2 0, 0.0 -25,-0.1 0.606 80.6-128.6 -75.9-165.2 -3.0 12.5 1.1 30 30 A M + 0 0 150 -2,-0.2 -25,-0.2 1,-0.1 25,-0.1 0.729 42.2 174.1 -78.9 -19.5 -2.2 10.8 -2.2 31 31 A G - 0 0 20 -27,-0.1 25,-0.2 23,-0.1 -1,-0.1 -0.114 57.9 -17.7 46.0-143.2 0.5 8.7 -0.5 32 32 A I S S- 0 0 5 23,-1.2 -27,-1.7 -27,-0.3 23,-0.2 -0.825 71.3-150.4 -97.5 125.3 2.0 6.1 -3.0 33 33 A P - 0 0 29 0, 0.0 3,-0.3 0, 0.0 -29,-0.1 0.192 34.5 -92.9 -73.0-161.5 -0.2 5.4 -6.1 34 34 A A S > S+ 0 0 43 -31,-0.3 3,-2.0 1,-0.2 6,-0.1 0.190 89.5 113.1-103.9 17.8 -0.2 2.1 -7.9 35 35 A E T 3 S+ 0 0 119 1,-0.3 -1,-0.2 2,-0.1 -3,-0.0 0.893 87.0 38.5 -56.8 -36.6 2.5 3.1 -10.4 36 36 A E T >> S+ 0 0 1 -3,-0.3 4,-3.2 1,-0.2 3,-0.9 -0.082 78.4 127.0-104.6 36.0 4.8 0.5 -8.8 37 37 A I H <> S+ 0 0 48 -3,-2.0 4,-1.8 1,-0.3 -1,-0.2 0.969 80.1 41.8 -55.6 -55.0 2.1 -2.1 -8.3 38 38 A P H 34 S+ 0 0 105 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.535 121.4 46.1 -70.5 -4.2 4.0 -4.8 -10.1 39 39 A N H <4 S+ 0 0 74 -3,-0.9 -2,-0.2 26,-0.0 -3,-0.1 0.672 110.2 49.1-109.4 -25.2 7.1 -3.5 -8.3 40 40 A L H >< S+ 0 0 15 -4,-3.2 3,-1.0 -3,-0.2 -23,-0.2 0.807 76.2 115.1 -84.8 -29.3 5.7 -3.2 -4.7 41 41 A V T 3< S+ 0 0 62 -4,-1.8 -23,-0.2 -5,-0.4 -25,-0.1 -0.141 88.1 21.6 -42.9 104.1 4.2 -6.7 -4.7 42 42 A G T 3 S+ 0 0 41 -25,-2.8 2,-0.4 1,-0.3 -1,-0.3 0.729 89.9 149.2 103.9 29.5 6.4 -8.2 -1.9 43 43 A M < - 0 0 8 -3,-1.0 -26,-1.6 -26,-0.5 2,-0.6 -0.768 37.5-144.0 -97.8 140.8 7.5 -5.0 -0.2 44 44 A Q - 0 0 97 -2,-0.4 17,-1.3 -28,-0.2 18,-0.3 -0.886 13.3-147.9-106.0 121.7 8.2 -4.9 3.6 45 45 A V - 0 0 11 -2,-0.6 -31,-1.9 -30,-0.4 15,-0.2 -0.356 7.5-147.1 -80.7 166.1 7.3 -1.7 5.4 46 46 A N S S+ 0 0 87 -33,-0.2 2,-0.4 1,-0.1 -33,-0.1 0.465 79.1 62.3-111.6 -4.7 9.3 -0.4 8.4 47 47 A R S S- 0 0 137 12,-0.1 -1,-0.1 -35,-0.1 -2,-0.1 -0.973 95.0-100.7-125.2 132.8 6.4 1.2 10.4 48 48 A A - 0 0 56 -2,-0.4 -2,-0.1 1,-0.1 -35,-0.1 -0.149 37.2-147.6 -46.8 135.8 3.3 -0.7 11.7 49 49 A V B -C 11 0C 4 -38,-1.8 -38,-1.9 -4,-0.1 3,-0.1 -0.925 9.7-159.2-116.9 113.9 0.4 -0.1 9.4 50 50 A P > - 0 0 68 0, 0.0 3,-0.7 0, 0.0 -39,-0.4 0.084 45.2 -56.8 -72.7-169.5 -3.1 -0.0 10.9 51 51 A L T 3 S+ 0 0 109 1,-0.3 -43,-0.2 -41,-0.2 -42,-0.2 -0.411 123.4 5.4 -71.8 148.8 -6.3 -0.7 8.9 52 52 A G T 3 S+ 0 0 36 -44,-1.8 2,-0.6 -46,-0.2 -44,-0.3 0.933 89.4 173.2 43.8 53.5 -7.0 1.5 5.9 53 53 A T E < -B 7 0B 19 -46,-3.0 -46,-2.1 -3,-0.7 -1,-0.2 -0.814 34.9-121.3 -96.5 121.0 -3.5 3.1 6.4 54 54 A T E -B 6 0B 31 -2,-0.6 2,-0.4 -48,-0.3 -48,-0.2 -0.355 33.5-110.1 -58.9 128.0 -2.4 5.5 3.6 55 55 A L - 0 0 16 -50,-2.2 -23,-1.2 -23,-0.2 -1,-0.1 -0.431 44.8-170.5 -62.5 115.8 0.8 4.2 2.1 56 56 A M > - 0 0 83 -2,-0.4 3,-1.4 -25,-0.2 -3,-0.0 -0.768 35.3-121.9-110.2 158.0 3.5 6.7 3.1 57 57 A P G > S+ 0 0 82 0, 0.0 3,-0.5 0, 0.0 6,-0.1 0.509 108.9 68.6 -73.0 -3.3 7.1 7.0 2.0 58 58 A D G 3 S+ 0 0 118 1,-0.2 -12,-0.1 -13,-0.0 -3,-0.0 0.596 94.6 54.5 -91.6 -10.2 8.1 6.6 5.7 59 59 A M G < S+ 0 0 11 -3,-1.4 2,-0.5 -13,-0.1 -1,-0.2 -0.088 87.3 94.9-112.2 35.6 7.0 2.9 5.8 60 60 A V < - 0 0 17 -3,-0.5 3,-0.4 -15,-0.2 -15,-0.2 -0.927 45.1-177.4-130.1 112.0 9.1 1.7 2.8 61 61 A K S S+ 0 0 130 -17,-1.3 2,-1.2 -2,-0.5 -1,-0.2 0.995 84.4 24.3 -69.5 -71.6 12.5 0.1 3.4 62 62 A N S S- 0 0 60 -18,-0.3 -1,-0.3 11,-0.1 2,-0.1 -0.685 84.9-149.6 -96.8 86.7 13.7 -0.6 -0.2 63 63 A Y - 0 0 36 -2,-1.2 3,-0.4 -3,-0.4 10,-0.1 -0.330 11.5-167.2 -55.9 120.5 11.7 2.0 -2.3 64 64 A E S S+ 0 0 73 1,-0.2 2,-1.6 -2,-0.1 -1,-0.1 0.957 78.5 19.2 -75.5 -81.5 11.2 0.4 -5.7 65 65 A D S S+ 0 0 52 1,-0.1 2,-0.4 -29,-0.1 -1,-0.2 -0.471 91.2 122.7 -89.0 69.3 9.9 3.1 -8.1 66 66 A G > + 0 0 8 -2,-1.6 3,-0.8 -3,-0.4 -1,-0.1 -0.693 19.1 158.9-130.6 82.7 11.1 6.1 -6.0 67 67 A T T 3 + 0 0 136 -2,-0.4 4,-0.2 1,-0.2 -1,-0.1 0.356 54.8 96.5 -85.1 9.7 13.5 8.3 -8.0 68 68 A T T 3 S- 0 0 114 2,-0.1 -1,-0.2 -3,-0.1 -2,-0.0 0.771 118.3 -51.2 -69.9 -22.0 12.8 11.2 -5.6 69 69 A S S < S+ 0 0 108 -3,-0.8 2,-3.0 0, 0.0 -2,-0.1 0.032 127.8 73.2-175.8 -60.5 15.9 10.3 -3.7 70 70 A P + 0 0 58 0, 0.0 -4,-0.3 0, 0.0 3,-0.2 -0.298 57.1 130.4 -72.6 59.9 16.2 6.7 -2.6 71 71 A G + 0 0 53 -2,-3.0 -4,-0.1 -4,-0.2 -7,-0.0 -0.074 40.7 93.7-104.7 35.3 17.0 5.6 -6.2 72 72 A L 0 0 175 0, 0.0 -1,-0.2 0, 0.0 -5,-0.0 0.858 360.0 360.0 -93.1 -41.3 20.1 3.6 -5.3 73 73 A K 0 0 210 -3,-0.2 -2,-0.1 -10,-0.1 -9,-0.1 0.951 360.0 360.0 -88.0 360.0 18.5 0.1 -4.9