==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 09-JAN-03 1NM7 . COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PAS20; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.R.PIRES,X.HONG,C.BROCKMANN,R.VOLKMER-ENGERT,J.SCHNEIDER- . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4460.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 55.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 26.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 310 A F 0 0 163 0, 0.0 60,-2.1 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0-115.6 5.4 11.5 -3.1 2 311 A A E -AB 25 60A 1 23,-1.8 23,-1.9 58,-0.2 2,-0.3 -0.898 360.0-142.0-137.9 167.5 7.0 9.4 -0.3 3 312 A R E -AB 24 59A 107 56,-1.9 56,-2.2 -2,-0.3 2,-0.6 -0.778 29.4-102.0-124.6 168.1 10.2 7.7 0.6 4 313 A A E + B 0 58A 1 19,-3.0 18,-1.2 -2,-0.3 54,-0.2 -0.847 30.7 179.1 -99.8 118.4 11.1 4.4 2.3 5 314 A L + 0 0 55 52,-1.9 2,-0.3 -2,-0.6 -1,-0.2 0.983 69.1 8.9 -76.1 -70.1 12.1 4.7 6.0 6 315 A Y S S- 0 0 122 51,-0.6 2,-0.4 15,-0.2 -1,-0.3 -0.814 98.1 -79.5-114.4 155.3 12.8 1.1 6.9 7 316 A D - 0 0 90 -2,-0.3 13,-0.3 -3,-0.1 2,-0.1 -0.330 57.1-159.3 -54.0 105.8 13.0 -2.1 4.8 8 317 A F - 0 0 15 -2,-0.4 11,-1.9 49,-0.1 -1,-0.0 -0.430 9.3-165.7 -88.1 165.2 9.3 -2.9 4.3 9 318 A V - 0 0 89 9,-0.2 9,-0.2 -2,-0.1 8,-0.2 -0.992 40.3 -75.8-151.8 144.6 7.9 -6.3 3.3 10 319 A P - 0 0 60 0, 0.0 6,-0.1 0, 0.0 8,-0.1 -0.153 36.4-152.4 -43.4 106.3 4.5 -7.6 1.9 11 320 A E S S+ 0 0 116 6,-0.2 5,-0.1 41,-0.2 42,-0.0 0.874 85.5 19.6 -50.3 -38.6 2.3 -7.5 5.0 12 321 A N S > S- 0 0 96 3,-0.1 2,-1.6 0, 0.0 3,-0.7 -0.990 80.6-122.7-135.0 142.2 0.4 -10.3 3.3 13 322 A P T 3 S+ 0 0 132 0, 0.0 -2,-0.1 0, 0.0 3,-0.0 -0.087 106.9 61.5 -75.0 40.9 1.4 -12.7 0.5 14 323 A E T 3 S- 0 0 171 -2,-1.6 2,-0.2 0, 0.0 -3,-0.0 0.577 117.4 -4.7-130.7 -43.8 -1.6 -11.4 -1.4 15 324 A M S < S+ 0 0 125 -3,-0.7 2,-0.3 2,-0.1 37,-0.3 -0.627 84.2 104.1-164.6 102.1 -1.1 -7.7 -2.0 16 325 A E - 0 0 24 35,-0.2 34,-0.2 -2,-0.2 2,-0.2 -0.977 52.3-107.4-168.0 167.3 1.6 -5.4 -0.7 17 326 A V - 0 0 0 35,-1.0 2,-0.4 -2,-0.3 -6,-0.2 -0.602 23.4-130.0-103.2 165.2 4.8 -3.6 -1.6 18 327 A A - 0 0 38 -2,-0.2 2,-0.4 -9,-0.2 -9,-0.2 -0.928 21.0-172.0-117.7 139.7 8.5 -4.2 -0.8 19 328 A L - 0 0 4 -11,-1.9 2,-0.6 -2,-0.4 6,-0.0 -0.995 15.4-155.7-135.2 140.4 10.9 -1.7 0.6 20 329 A K > - 0 0 138 -2,-0.4 3,-1.5 -13,-0.3 -16,-0.1 -0.928 52.0 -87.7-116.4 104.9 14.7 -1.7 1.2 21 330 A K T 3 S+ 0 0 149 -2,-0.6 -15,-0.2 1,-0.3 -16,-0.2 0.361 122.6 24.1 -10.7 105.7 15.8 0.8 3.9 22 331 A G T 3 S+ 0 0 52 -18,-1.2 -1,-0.3 1,-0.2 -18,-0.2 0.212 95.4 130.1 110.7 -13.3 16.3 4.0 1.8 23 332 A D < - 0 0 22 -3,-1.5 -19,-3.0 -20,-0.1 2,-0.3 0.213 50.5-124.9 -58.5-172.4 14.0 2.9 -1.0 24 333 A L E +A 3 0A 100 -21,-0.3 2,-0.3 -3,-0.1 -21,-0.3 -0.974 24.7 177.7-141.4 154.3 11.3 5.2 -2.4 25 334 A M E -A 2 0A 6 -23,-1.9 -23,-1.8 -2,-0.3 2,-0.6 -0.994 26.5-126.1-157.0 152.1 7.5 5.0 -2.9 26 335 A A E -C 44 0B 15 18,-2.1 18,-2.2 -2,-0.3 2,-0.3 -0.891 26.6-153.2-104.3 121.0 4.5 7.0 -4.1 27 336 A I E +C 43 0B 36 -2,-0.6 16,-0.2 16,-0.2 3,-0.1 -0.743 26.7 157.6 -99.0 141.1 1.6 7.2 -1.7 28 337 A L + 0 0 84 14,-1.8 -1,-0.2 -2,-0.3 15,-0.1 0.667 55.7 58.5-121.9 -60.0 -2.0 7.7 -2.9 29 338 A S - 0 0 19 13,-0.2 13,-0.1 1,-0.1 2,-0.1 -0.150 58.1-167.3 -71.7 171.5 -4.5 6.5 -0.3 30 339 A K S S- 0 0 130 11,-0.1 -1,-0.1 -3,-0.1 -2,-0.1 0.047 76.9 -16.0-126.6-120.7 -4.7 7.8 3.3 31 340 A K S S- 0 0 55 5,-0.3 3,-0.2 1,-0.2 -2,-0.1 0.814 98.6-132.5 -57.8 -20.6 -6.6 6.2 6.2 32 341 A D S S+ 0 0 84 1,-0.2 -1,-0.2 -4,-0.1 -2,-0.0 -0.608 79.2 26.3 104.9 -63.5 -8.0 4.7 3.0 33 342 A P S S+ 0 0 101 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.904 136.7 9.9 -92.2 -77.1 -11.9 5.0 3.5 34 343 A L S S- 0 0 156 -3,-0.2 -2,-0.1 -4,-0.1 -3,-0.0 0.964 92.8-125.9 -69.6 -55.4 -12.8 7.9 5.8 35 344 A G + 0 0 47 -5,-0.1 3,-0.1 2,-0.0 -1,-0.0 0.721 53.9 146.3 110.0 34.6 -9.4 9.5 6.0 36 345 A R - 0 0 167 1,-0.1 2,-0.5 -6,-0.0 -5,-0.3 0.232 55.0 -61.0 -80.8-154.2 -9.0 9.7 9.8 37 346 A D S S+ 0 0 143 -6,-0.1 2,-0.2 -7,-0.1 -1,-0.1 -0.862 78.5 96.9-104.6 130.9 -5.7 9.4 11.8 38 347 A S S S- 0 0 63 -2,-0.5 2,-1.0 -3,-0.1 0, 0.0 -0.848 71.0 -95.3 167.8 161.0 -3.5 6.3 11.7 39 348 A D S S+ 0 0 49 -2,-0.2 17,-0.3 15,-0.1 2,-0.2 -0.739 75.8 105.0-103.9 94.0 -0.4 5.0 9.9 40 349 A W + 0 0 78 -2,-1.0 2,-0.3 14,-0.3 12,-0.0 -0.694 37.3 163.2-167.6 104.6 -1.5 2.9 6.9 41 350 A W E - D 0 53B 39 12,-2.3 12,-2.3 -2,-0.2 2,-0.3 -0.810 34.3-116.7-125.3 167.6 -1.3 4.1 3.3 42 351 A K E - D 0 52B 67 -2,-0.3 -14,-1.8 10,-0.3 2,-0.3 -0.760 37.7-175.1-101.7 144.8 -1.4 2.7 -0.2 43 352 A V E -CD 27 51B 0 8,-2.2 8,-1.9 -2,-0.3 2,-0.4 -0.952 27.9-147.7-143.3 165.5 1.7 3.0 -2.4 44 353 A R E -CD 26 50B 111 -18,-2.2 -18,-2.1 -2,-0.3 2,-0.6 -0.970 17.9-161.5-134.0 112.4 3.2 2.5 -5.8 45 354 A T E >> S- D 0 49B 0 4,-2.8 3,-3.0 -2,-0.4 4,-2.2 -0.872 76.7 -27.0-102.4 120.1 6.9 1.7 -6.0 46 355 A K T 34 S- 0 0 124 -2,-0.6 -1,-0.2 1,-0.3 -21,-0.1 0.725 107.7 -81.2 50.1 21.3 8.6 2.3 -9.4 47 356 A N T 34 S+ 0 0 111 2,-0.2 -1,-0.3 1,-0.1 3,-0.1 0.595 127.0 90.3 62.3 10.1 5.1 1.6 -10.7 48 357 A G T <4 S+ 0 0 57 -3,-3.0 2,-0.6 1,-0.2 -2,-0.2 0.767 78.7 49.7-102.8 -35.8 6.0 -2.1 -10.2 49 358 A N E < +D 45 0B 68 -4,-2.2 -4,-2.8 -31,-0.1 2,-0.5 -0.922 63.8 178.1-112.7 114.6 4.9 -2.7 -6.6 50 359 A I E +D 44 0B 67 -2,-0.6 2,-0.2 -6,-0.2 -6,-0.2 -0.957 34.3 84.5-118.7 120.7 1.4 -1.7 -5.7 51 360 A G E S-D 43 0B 3 -8,-1.9 -8,-2.2 -2,-0.5 2,-0.2 -0.747 70.6 -50.6-171.4-139.3 -0.0 -2.3 -2.2 52 361 A Y E -D 42 0B 97 -10,-0.3 -35,-1.0 -37,-0.3 -10,-0.3 -0.651 34.7-175.5-118.8 176.3 -0.1 -0.9 1.3 53 362 A I E -D 41 0B 0 -12,-2.3 -12,-2.3 -2,-0.2 4,-0.1 -0.685 32.7-109.0-175.6 118.3 2.5 0.4 3.8 54 363 A P > - 0 0 16 0, 0.0 3,-1.5 0, 0.0 -14,-0.3 -0.141 27.9-128.6 -48.2 139.6 2.2 1.7 7.4 55 364 A Y G > S+ 0 0 101 1,-0.3 3,-1.5 2,-0.2 -15,-0.1 0.820 107.5 66.8 -64.6 -28.1 2.8 5.4 7.6 56 365 A N G 3 S+ 0 0 106 -17,-0.3 -1,-0.3 1,-0.3 3,-0.1 0.260 99.6 53.5 -75.9 15.0 5.4 4.8 10.3 57 366 A Y G < S+ 0 0 98 -3,-1.5 -52,-1.9 -4,-0.1 -51,-0.6 0.269 104.1 58.2-129.5 6.4 7.5 3.1 7.6 58 367 A I E < S-B 4 0A 4 -3,-1.5 2,-0.3 -54,-0.2 -54,-0.2 -0.960 71.7-124.3-139.9 156.7 7.6 5.8 4.9 59 368 A E E -B 3 0A 70 -56,-2.2 -56,-1.9 -2,-0.3 2,-0.6 -0.788 18.6-135.9-101.6 143.2 8.7 9.5 4.6 60 369 A I E B 2 0A 64 -2,-0.3 -58,-0.2 -58,-0.2 -5,-0.0 -0.873 360.0 360.0-101.6 118.7 6.4 12.3 3.4 61 370 A I 0 0 154 -60,-2.1 -1,-0.2 -2,-0.6 -59,-0.1 0.950 360.0 360.0 -49.4 360.0 8.0 14.6 0.8