==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 10-JAN-03 1NMI . COMPND 2 MOLECULE: CYTOCHROME C, ISO-1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR Y.YAO,Y.TONG,G.LIU,J.WANG,J.ZHENG,W.TANG . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6725.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 54.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 193 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 168.2 7.8 17.6 6.2 2 -4 A E - 0 0 133 1,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.283 360.0-137.6 -59.8 151.8 8.7 14.8 8.7 3 -3 A F - 0 0 77 94,-0.0 2,-0.2 2,-0.0 64,-0.0 -0.967 21.4-152.2-101.9 126.4 7.3 11.3 8.3 4 -2 A K - 0 0 94 -2,-0.5 2,-0.3 90,-0.0 97,-0.2 -0.607 15.9-169.7 -96.6 165.7 6.2 9.9 11.7 5 -1 A A + 0 0 51 -2,-0.2 93,-0.2 1,-0.1 92,-0.1 -0.994 48.5 9.2-161.0 146.9 6.2 6.2 12.4 6 1 A G S S+ 0 0 44 91,-0.4 -1,-0.1 -2,-0.3 92,-0.1 0.874 74.0 135.3 41.0 65.6 5.1 3.5 14.9 7 2 A S S S+ 0 0 58 87,-0.2 -1,-0.1 -3,-0.1 88,-0.1 0.854 80.4 16.4-104.8 -62.6 3.0 5.8 17.0 8 3 A A S S- 0 0 34 86,-0.3 87,-0.1 87,-0.0 -2,-0.0 0.738 88.7-146.0 -79.6 -26.9 -0.2 3.8 17.7 9 4 A K S S+ 0 0 142 1,-0.1 86,-0.0 86,-0.0 90,-0.0 0.865 70.3 113.8 45.0 45.4 1.5 0.6 16.6 10 5 A K >> + 0 0 126 85,-0.1 3,-2.8 2,-0.1 4,-2.8 0.454 37.4 104.5-105.2 -14.9 -1.9 -0.4 15.2 11 6 A G H 3> S+ 0 0 0 1,-0.3 4,-3.1 2,-0.2 5,-0.2 0.792 76.5 53.3 -38.5 -46.7 -0.7 -0.3 11.6 12 7 A A H 3> S+ 0 0 38 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.642 117.1 38.5 -71.2 -16.4 -0.6 -4.1 11.2 13 8 A T H <> S+ 0 0 77 -3,-2.8 4,-0.7 2,-0.2 -2,-0.2 0.692 110.0 59.1-101.3 -31.8 -4.2 -4.3 12.4 14 9 A L H >< S+ 0 0 19 -4,-2.8 3,-2.2 2,-0.2 4,-0.4 0.982 106.8 50.4 -53.0 -53.3 -5.2 -1.2 10.5 15 10 A F H >X>S+ 0 0 10 -4,-3.1 5,-2.7 1,-0.3 3,-2.0 0.914 104.8 55.8 -49.1 -51.8 -4.0 -3.2 7.4 16 11 A K H 3<5S+ 0 0 105 -4,-0.6 -1,-0.3 1,-0.3 -2,-0.2 0.630 117.4 35.9 -57.7 -17.0 -6.2 -6.2 8.5 17 12 A T T <<5S+ 0 0 81 -3,-2.2 -1,-0.3 -4,-0.7 -2,-0.2 0.220 133.0 25.2-120.2 8.4 -9.2 -3.8 8.5 18 13 A R T <45S+ 0 0 72 -3,-2.0 -3,-0.2 -4,-0.4 -2,-0.2 0.530 130.7 25.6-133.5 -60.8 -8.2 -1.6 5.4 19 14 A C T >X5S+ 0 0 12 -4,-1.5 4,-3.1 -5,-0.2 3,-2.8 0.847 107.4 71.0 -87.3 -37.2 -5.8 -3.4 3.0 20 15 A L T 34 S- 0 0 136 1,-0.2 3,-2.6 4,-0.1 2,-1.0 -0.215 87.0 -73.0 -62.7 158.4 2.0 -12.4 3.6 27 22 A K T 3 S- 0 0 154 1,-0.3 -1,-0.2 10,-0.1 -2,-0.1 -0.377 115.7 -22.8 -65.4 96.1 5.0 -14.1 1.9 28 23 A G T 3 S- 0 0 53 -2,-1.0 -1,-0.3 -3,-0.1 3,-0.1 0.879 101.9-176.4 62.7 38.6 3.7 -14.3 -1.7 29 24 A G < - 0 0 7 -3,-2.6 7,-0.3 1,-0.2 -5,-0.1 -0.046 34.7 -66.6 -61.1 168.1 0.2 -14.1 -0.2 30 25 A P - 0 0 92 0, 0.0 2,-2.3 0, 0.0 3,-0.2 -0.323 38.0-125.5 -65.1 137.3 -2.9 -14.4 -2.4 31 26 A H + 0 0 54 1,-0.2 -8,-0.1 -3,-0.1 5,-0.1 -0.502 41.6 178.3 -76.0 65.4 -3.6 -11.6 -4.9 32 27 A K S S- 0 0 123 -2,-2.3 -1,-0.2 1,-0.1 -9,-0.2 0.866 71.3 -31.7 -45.3 -65.9 -7.0 -11.2 -3.2 33 28 A V S S+ 0 0 54 -11,-2.9 -10,-0.2 1,-0.5 -1,-0.1 0.561 143.4 19.9-121.5 -51.4 -8.4 -8.3 -5.3 34 29 A G S S- 0 0 9 -12,-2.9 -1,-0.5 1,-0.2 -10,-0.0 -0.448 106.3 -75.8 -98.9-175.4 -5.2 -6.4 -5.9 35 30 A P - 0 0 6 0, 0.0 -11,-0.5 0, 0.0 -1,-0.2 -0.142 51.3 -87.2 -75.2 175.3 -1.7 -8.1 -5.7 36 31 A N - 0 0 2 -7,-0.3 -11,-0.2 -13,-0.2 -5,-0.1 -0.554 28.1-146.7 -76.8 151.8 0.3 -9.1 -2.7 37 32 A L > + 0 0 13 -13,-2.7 3,-2.6 -2,-0.2 2,-0.3 0.192 40.1 148.4-111.6 8.8 2.6 -6.3 -1.2 38 33 A H T 3 S- 0 0 49 -12,-0.4 -12,-0.1 1,-0.3 -2,-0.1 -0.326 87.6 -12.2 -53.6 110.8 5.5 -8.5 0.1 39 34 A G T 3 S+ 0 0 12 -2,-0.3 -1,-0.3 65,-0.1 65,-0.1 0.742 88.1 152.6 69.4 26.7 8.6 -6.3 -0.3 40 35 A I S X> S+ 0 0 13 -3,-2.6 3,-0.8 1,-0.2 4,-0.5 0.842 71.9 51.3 -59.4 -35.6 6.6 -3.8 -2.5 41 36 A F T 34 S+ 0 0 4 -4,-0.3 2,-1.7 1,-0.3 23,-0.7 0.980 109.7 49.5 -59.3 -55.5 8.9 -1.0 -1.4 42 37 A G T 34 S+ 0 0 71 21,-0.1 -1,-0.3 65,-0.1 -2,-0.1 -0.236 115.3 48.4 -81.0 47.7 11.9 -3.0 -2.3 43 38 A R T <4 S- 0 0 52 -2,-1.7 2,-0.3 -3,-0.8 -2,-0.1 0.061 96.7-105.8-142.2-103.0 10.4 -3.8 -5.7 44 39 A H >< - 0 0 75 -4,-0.5 2,-2.1 19,-0.1 3,-0.6 -0.885 59.4 -43.1-179.4-177.6 8.9 -1.0 -8.0 45 40 A S T 3 S- 0 0 3 17,-2.9 17,-0.1 14,-0.3 16,-0.1 -0.447 121.5 -25.8 -66.1 82.2 5.4 0.1 -9.0 46 41 A G T 3 + 0 0 2 -2,-2.1 -1,-0.2 -6,-0.2 13,-0.1 0.966 68.6 150.8 77.1 60.3 3.9 -3.3 -9.6 47 42 A Q < + 0 0 111 -3,-0.6 2,-0.3 -7,-0.1 -1,-0.1 -0.447 37.9 153.0 -92.8 46.2 6.4 -6.0 -10.5 48 43 A A - 0 0 23 3,-0.2 -11,-0.1 1,-0.1 -3,-0.0 -0.633 47.1-121.7 -69.5 137.9 3.9 -8.2 -8.8 49 44 A E S S+ 0 0 101 -2,-0.3 2,-2.4 1,-0.1 -13,-0.2 -0.242 83.7 1.5 -58.0 163.0 3.9 -11.8 -10.1 50 45 A G S S+ 0 0 72 1,-0.1 2,-1.9 2,-0.1 -1,-0.1 -0.216 100.9 92.4 65.4 -72.8 0.5 -13.1 -11.5 51 46 A Y - 0 0 59 -2,-2.4 2,-2.5 1,-0.1 -3,-0.2 -0.391 55.2-169.6 -74.4 80.8 -1.9 -10.1 -11.3 52 47 A S + 0 0 117 -2,-1.9 -1,-0.1 2,-0.0 -2,-0.1 -0.404 20.2 169.6 -71.9 69.3 -1.4 -8.4 -14.7 53 48 A Y - 0 0 46 -2,-2.5 -19,-0.0 1,-0.1 0, 0.0 -0.110 44.6-114.1 -68.0 173.8 -3.4 -5.2 -13.9 54 49 A T + 0 0 107 27,-0.1 5,-0.1 1,-0.0 28,-0.1 0.943 50.9 158.3 -83.1 -52.4 -3.4 -2.2 -16.3 55 50 A D > + 0 0 13 26,-0.3 4,-2.9 1,-0.1 5,-0.1 0.660 3.4 154.1 41.0 45.7 -1.5 0.2 -13.9 56 51 A A H > S+ 0 0 74 2,-0.2 4,-1.4 1,-0.2 -1,-0.1 0.957 78.0 40.3 -65.9 -52.5 -0.2 2.7 -16.4 57 52 A N H 4 S+ 0 0 47 23,-0.3 -1,-0.2 1,-0.2 23,-0.1 0.917 116.7 52.3 -60.0 -47.3 0.0 5.6 -13.9 58 53 A I H 4 S+ 0 0 18 22,-0.2 4,-0.4 23,-0.1 -2,-0.2 0.941 109.7 49.1 -50.7 -58.5 1.3 3.2 -11.3 59 54 A K H >< + 0 0 98 -4,-2.9 3,-2.8 2,-0.1 -14,-0.3 0.947 58.8 131.2 -53.8 -77.7 4.1 1.8 -13.6 60 55 A K T 3< S- 0 0 172 -4,-1.4 -1,-0.1 1,-0.3 -3,-0.1 0.702 103.7 -78.5 26.7 46.0 5.8 5.1 -15.0 61 56 A N T 3 S+ 0 0 158 1,-0.1 -1,-0.3 -16,-0.1 2,-0.2 0.833 89.5 162.3 15.2 68.6 9.0 3.2 -13.9 62 57 A V < - 0 0 45 -3,-2.8 -17,-2.9 -4,-0.4 2,-0.3 -0.667 34.6-141.2-105.2 154.1 8.3 4.2 -10.2 63 58 A L - 0 0 77 -19,-0.3 2,-0.6 -2,-0.2 -22,-0.1 -0.733 22.1-118.5-102.7 160.4 9.5 3.0 -6.9 64 59 A W + 0 0 21 -23,-0.7 2,-0.3 -24,-0.4 -21,-0.2 -0.921 36.6 172.5-102.4 121.7 7.5 2.6 -3.7 65 60 A D > - 0 0 75 -2,-0.6 4,-3.0 1,-0.1 5,-0.3 -0.800 49.0-106.6-116.0 162.5 8.6 4.7 -0.8 66 61 A E H > S+ 0 0 64 -2,-0.3 4,-2.7 1,-0.2 5,-0.1 0.916 124.5 47.1 -55.7 -42.1 6.9 5.1 2.5 67 62 A N H > S+ 0 0 92 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.979 112.1 46.5 -59.1 -62.1 6.0 8.6 1.3 68 63 A N H > S+ 0 0 39 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.925 116.5 46.0 -53.4 -47.2 4.8 7.6 -2.2 69 64 A M H X S+ 0 0 12 -4,-3.0 4,-2.1 1,-0.2 -1,-0.2 0.947 109.5 54.3 -59.5 -50.7 2.7 4.8 -0.7 70 65 A S H < S+ 0 0 13 -4,-2.7 -2,-0.2 -5,-0.3 -1,-0.2 0.890 108.6 49.8 -51.3 -43.4 1.4 7.2 2.0 71 66 A E H >X S+ 0 0 93 -4,-2.7 3,-2.5 1,-0.2 4,-1.6 0.982 111.0 47.8 -58.7 -53.1 0.2 9.5 -0.7 72 67 A Y H 3< S+ 0 0 50 -4,-2.6 16,-0.4 1,-0.3 -2,-0.2 0.762 115.3 47.5 -56.8 -26.6 -1.5 6.5 -2.5 73 68 A L T 3< S+ 0 0 23 -4,-2.1 17,-0.5 -5,-0.2 -1,-0.3 0.312 113.1 52.4 -92.2 2.4 -3.0 5.7 1.0 74 69 A T T <4 S+ 0 0 39 -3,-2.5 15,-2.6 -5,-0.2 -2,-0.2 0.847 88.5 68.3-104.8 -65.0 -4.1 9.3 1.6 75 70 A N S < S- 0 0 62 -4,-1.6 2,-0.8 13,-0.3 4,-0.2 -0.424 86.5-114.5 -71.6 133.1 -6.2 10.8 -1.2 76 71 A P S S- 0 0 97 0, 0.0 12,-0.2 0, 0.0 11,-0.1 -0.517 72.4 -57.6 -65.7 106.0 -9.7 9.3 -1.7 77 72 A K S S+ 0 0 88 -2,-0.8 2,-1.5 -5,-0.2 10,-0.1 -0.279 95.5 116.6 51.9-137.5 -9.3 7.6 -5.1 78 73 A K + 0 0 167 1,-0.2 2,-2.7 8,-0.1 -1,-0.1 -0.033 43.0 115.1 70.6 -33.4 -8.3 10.1 -7.9 79 74 A Y S S- 0 0 51 -2,-1.5 -1,-0.2 -4,-0.2 -21,-0.1 -0.390 98.2 -97.9 -71.2 71.3 -5.0 8.2 -8.4 80 75 A I + 0 0 117 -2,-2.7 -23,-0.3 1,-0.1 3,-0.2 0.611 63.5 168.7 20.1 56.9 -5.9 7.3 -11.9 81 76 A P + 0 0 24 0, 0.0 2,-2.5 0, 0.0 -26,-0.3 0.929 10.7 159.7 -67.4 -51.9 -7.1 3.8 -10.8 82 77 A G + 0 0 74 1,-0.2 -2,-0.1 2,-0.2 -3,-0.0 -0.440 63.1 77.5 67.8 -73.2 -8.9 2.5 -13.9 83 78 A T S S- 0 0 43 -2,-2.5 -1,-0.2 -3,-0.2 -3,-0.0 0.741 117.0 -84.2 -21.8 -66.2 -8.5 -1.1 -12.6 84 79 A K S S+ 0 0 101 0, 0.0 2,-0.4 0, 0.0 -2,-0.2 -0.139 84.0 13.8-167.8 -71.4 -11.4 -0.7 -10.1 85 80 A M + 0 0 166 -4,-0.1 2,-0.3 -8,-0.1 -2,-0.0 -0.993 34.6 169.9-146.3 131.5 -11.1 0.8 -6.6 86 81 A A - 0 0 30 -2,-0.4 -8,-0.1 1,-0.1 -13,-0.1 -0.915 9.2-171.8-137.0 155.7 -8.8 2.9 -4.4 87 82 A F - 0 0 91 -2,-0.3 2,-0.2 -15,-0.2 -14,-0.1 0.669 15.2-161.8-128.8 -34.5 -10.0 4.3 -1.0 88 83 A G + 0 0 0 -16,-0.4 -13,-0.3 -12,-0.2 -14,-0.2 -0.556 56.6 49.3 83.6-143.8 -7.3 6.7 0.5 89 84 A G - 0 0 35 -15,-2.6 -15,-0.2 -2,-0.2 4,-0.1 -0.066 63.3-145.7 -45.4 116.8 -7.1 7.8 4.1 90 85 A L - 0 0 2 -17,-0.5 -1,-0.1 2,-0.2 3,-0.1 0.901 66.7 -75.2 -40.7 -63.6 -7.4 4.8 6.5 91 86 A K S S+ 0 0 149 1,-0.6 2,-0.2 0, 0.0 -2,-0.1 0.005 108.3 28.3-162.0 -49.6 -9.2 7.0 8.9 92 87 A K S > S- 0 0 136 1,-0.1 4,-1.4 0, 0.0 -1,-0.6 -0.669 72.0-117.1-114.0 172.5 -6.6 9.4 10.5 93 88 A E H > S+ 0 0 77 -2,-0.2 4,-2.2 2,-0.2 5,-0.2 0.921 116.8 48.9 -71.5 -51.5 -3.3 11.0 9.6 94 89 A K H > S+ 0 0 78 1,-0.2 4,-2.9 2,-0.2 -86,-0.3 0.867 106.3 60.1 -62.7 -28.8 -1.4 9.3 12.4 95 90 A D H > S+ 0 0 29 2,-0.2 4,-3.4 1,-0.2 -1,-0.2 0.937 104.5 48.0 -60.9 -51.1 -3.0 6.0 11.3 96 91 A R H X S+ 0 0 60 -4,-1.4 4,-2.8 2,-0.2 5,-0.3 0.953 111.7 49.8 -55.7 -47.4 -1.4 6.4 7.8 97 92 A N H X S+ 0 0 10 -4,-2.2 4,-2.4 1,-0.2 -91,-0.4 0.957 114.9 44.9 -53.4 -52.1 1.9 7.1 9.4 98 93 A D H X S+ 0 0 0 -4,-2.9 4,-2.7 -93,-0.2 -92,-0.3 0.926 114.1 48.8 -53.8 -54.6 1.5 4.0 11.6 99 94 A L H X S+ 0 0 0 -4,-3.4 4,-3.0 2,-0.2 5,-0.3 0.957 110.7 49.0 -53.4 -61.1 0.3 1.8 8.7 100 95 A I H X S+ 0 0 0 -4,-2.8 4,-2.7 1,-0.3 -1,-0.2 0.901 113.5 48.0 -49.7 -48.4 3.1 2.7 6.3 101 96 A T H X S+ 0 0 33 -4,-2.4 4,-2.8 -5,-0.3 -1,-0.3 0.919 113.3 46.0 -60.2 -46.3 5.6 2.0 9.1 102 97 A Y H X S+ 0 0 101 -4,-2.7 4,-2.8 2,-0.2 -2,-0.2 0.926 115.4 46.1 -65.1 -41.6 4.2 -1.3 10.0 103 98 A L H X S+ 0 0 7 -4,-3.0 4,-1.2 2,-0.2 -1,-0.2 0.820 111.7 54.1 -75.0 -29.2 3.9 -2.4 6.4 104 99 A K H >X S+ 0 0 26 -4,-2.7 4,-3.1 -5,-0.3 3,-1.3 1.000 114.4 38.6 -53.9 -69.6 7.4 -1.2 5.8 105 100 A K H 3< S+ 0 0 130 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.801 107.7 66.9 -59.8 -34.8 8.8 -3.3 8.7 106 101 A A H 3< S+ 0 0 60 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.2 0.866 126.3 4.3 -47.8 -48.8 6.5 -6.2 7.8 107 102 A T H << 0 0 27 -3,-1.3 -2,-0.2 -4,-1.2 -1,-0.2 0.436 360.0 360.0-131.9 -1.1 8.2 -6.9 4.5 108 103 A E < 0 0 114 -4,-3.1 -3,-0.2 -5,-0.2 -4,-0.1 0.380 360.0 360.0-117.7 360.0 11.2 -4.5 4.3