==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 10-JAN-03 1NMJ . COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE FROM ALZHEIMER'S DISEASE . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.HUANG,Y.YAO,W.X.TANG . 28 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2951.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 67.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 28.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 138 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -91.5 9.8 -14.2 3.8 2 2 A A + 0 0 105 1,-0.2 2,-2.3 2,-0.1 3,-0.3 0.846 360.0 73.7 -61.2 -34.2 7.8 -13.2 0.6 3 3 A E + 0 0 152 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 -0.265 64.3 146.1 -72.6 46.0 4.9 -15.2 2.3 4 4 A F - 0 0 150 -2,-2.3 2,-0.2 1,-0.2 -1,-0.2 0.869 62.0 -56.4 -70.9 -41.2 4.5 -12.3 4.6 5 5 A G - 0 0 34 -3,-0.3 -1,-0.2 3,-0.1 0, 0.0 -0.882 24.3-152.3 173.1 165.2 0.8 -12.4 5.1 6 6 A H S S+ 0 0 183 -2,-0.2 6,-0.2 -3,-0.1 -1,-0.1 0.659 107.2 47.3-115.5 -52.3 -2.6 -12.4 3.3 7 7 A D S > S+ 0 0 139 2,-0.1 3,-1.2 0, 0.0 -2,-0.1 0.900 101.1 92.2 -31.8 -56.2 -4.5 -10.9 6.2 8 8 A S T 3 S+ 0 0 51 1,-0.3 6,-0.1 2,-0.1 -3,-0.1 -0.236 92.0 10.4 -73.8 141.4 -1.7 -8.4 6.5 9 9 A G T 3 >S- 0 0 13 5,-0.1 5,-1.5 4,-0.1 6,-0.3 0.739 84.9-160.4 65.3 27.5 -1.8 -5.1 4.7 10 10 A F T < 5S+ 0 0 125 -3,-1.2 2,-2.5 1,-0.3 5,-0.1 0.404 79.5 51.6 1.3 -79.4 -5.4 -5.8 4.0 11 11 A E T >5S- 0 0 109 1,-0.2 4,-2.1 2,-0.1 2,-0.8 -0.426 112.1-115.9 -73.6 65.5 -6.1 -3.4 1.1 12 12 A V T 45S+ 0 0 134 -2,-2.5 2,-0.8 1,-0.3 -1,-0.2 -0.065 116.3 47.7 37.0 -75.4 -3.0 -4.9 -0.7 13 13 A R T >>S- 0 0 112 -2,-0.8 4,-2.0 1,-0.1 5,-0.8 -0.094 125.8-104.1 -70.5 33.2 -1.1 -1.5 -0.6 14 14 A H T 4< - 0 0 97 -5,-1.5 2,-2.7 -2,-0.8 -2,-0.2 0.627 48.2-105.1 54.7 12.1 -2.2 -1.4 3.1 15 15 A Q T X5S+ 0 0 47 -4,-2.1 4,-2.3 -6,-0.3 -1,-0.2 -0.407 118.8 73.5 58.6 -62.9 -4.7 1.2 1.8 16 16 A K H >5S+ 0 0 119 -2,-2.7 4,-2.2 1,-0.2 5,-0.3 0.648 95.9 50.5 -58.0 -13.9 -2.6 4.0 3.3 17 17 A L H X>S+ 0 0 80 -4,-2.0 4,-1.4 2,-0.2 5,-1.2 0.922 107.3 49.3 -84.9 -51.5 0.1 3.6 0.5 18 18 A V H 4X5S+ 0 0 126 -4,-2.3 4,-2.4 -6,-0.3 3,-0.7 0.894 127.4 26.2 -77.6 -82.6 -3.5 6.7 -0.7 20 20 A F H 3X5S+ 0 0 135 -4,-2.2 4,-3.0 1,-0.3 5,-0.4 0.840 121.1 49.2 -61.2 -47.1 -0.4 8.4 0.7 21 21 A A H 3X5S+ 0 0 42 -4,-1.4 4,-1.6 -5,-0.3 -1,-0.3 0.860 117.7 44.8 -61.4 -30.0 2.3 7.3 -1.7 22 22 A E H <4