==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-OCT-06 2NOC . COMPND 2 MOLECULE: PUTATIVE PERIPLASMIC PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA CHOLERAESUIS; . AUTHOR Q.ZHANG,G.LIU,H.WANG,C.NWOSU,K.CUNNINGHAM,L.C.MA,R.XIAO, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8389.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 51.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 13.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 160 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 143.1 23.4 -41.5 -32.7 2 2 A K - 0 0 185 1,-0.1 2,-0.1 2,-0.1 0, 0.0 -0.301 360.0-124.9 -54.2 112.5 25.9 -42.8 -30.2 3 3 A T + 0 0 144 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.353 58.3 125.7 -67.5 133.5 23.8 -43.5 -27.1 4 4 A G + 0 0 61 -2,-0.1 2,-0.4 -3,-0.1 -1,-0.1 0.016 21.5 134.6 172.7 67.2 24.8 -41.9 -23.9 5 5 A Y - 0 0 205 2,-0.0 2,-0.4 0, 0.0 -2,-0.0 -0.981 27.0-166.5-127.0 141.3 22.3 -39.8 -21.9 6 6 A K - 0 0 186 -2,-0.4 2,-0.5 2,-0.0 -2,-0.0 -0.966 8.1-157.7-127.4 143.1 21.6 -39.8 -18.2 7 7 A V - 0 0 134 -2,-0.4 2,-0.8 2,-0.1 -2,-0.0 -0.923 11.0-179.7-123.7 105.6 18.7 -38.3 -16.2 8 8 A M + 0 0 185 -2,-0.5 2,-0.3 2,-0.0 -2,-0.0 -0.833 16.9 157.0-109.9 94.2 19.4 -37.6 -12.6 9 9 A L + 0 0 156 -2,-0.8 2,-0.2 2,-0.0 -2,-0.1 -0.847 11.6 170.7-116.4 154.9 16.3 -36.1 -10.9 10 10 A G + 0 0 76 -2,-0.3 2,-0.5 0, 0.0 -2,-0.0 -0.599 2.8 165.9-169.4 98.7 15.4 -36.1 -7.2 11 11 A A + 0 0 99 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.975 20.3 133.4-120.8 128.3 12.5 -34.3 -5.6 12 12 A L + 0 0 171 -2,-0.5 2,-0.5 1,-0.2 -1,-0.1 0.429 65.7 58.6-142.7 -21.3 11.3 -35.0 -2.1 13 13 A A + 0 0 85 2,-0.0 2,-0.2 0, 0.0 -1,-0.2 -0.930 59.6 132.7-122.0 107.7 11.0 -31.6 -0.4 14 14 A F + 0 0 181 -2,-0.5 2,-0.3 -3,-0.1 -3,-0.0 -0.772 6.9 144.7-157.8 106.1 8.7 -29.1 -2.0 15 15 A V + 0 0 118 -2,-0.2 2,-0.6 3,-0.0 3,-0.2 -0.812 10.4 169.3-144.3 101.0 6.1 -27.0 -0.2 16 16 A V + 0 0 100 -2,-0.3 3,-0.0 1,-0.1 -2,-0.0 -0.812 36.6 112.3-116.6 89.1 5.5 -23.4 -1.4 17 17 A T + 0 0 128 -2,-0.6 2,-0.5 2,-0.0 -1,-0.1 0.107 41.9 118.8-140.4 19.8 2.4 -22.0 0.2 18 18 A N - 0 0 98 -3,-0.2 2,-0.4 2,-0.0 -3,-0.0 -0.806 36.8-179.1 -97.8 123.4 3.9 -19.3 2.4 19 19 A V - 0 0 129 -2,-0.5 2,-0.2 -3,-0.0 47,-0.0 -0.980 6.2-165.4-126.4 128.5 2.9 -15.7 1.7 20 20 A Y - 0 0 114 -2,-0.4 2,-0.4 43,-0.1 47,-0.1 -0.674 21.4-114.3-107.0 165.7 4.2 -12.6 3.5 21 21 A A - 0 0 74 -2,-0.2 2,-0.3 45,-0.1 43,-0.0 -0.797 20.0-124.8-106.4 142.5 2.8 -9.1 3.5 22 22 A A + 0 0 13 -2,-0.4 2,-0.3 37,-0.1 47,-0.3 -0.658 35.4 170.7 -83.5 137.3 4.4 -5.9 2.1 23 23 A E E -a 69 0A 131 45,-1.4 47,-2.5 -2,-0.3 2,-0.4 -0.968 39.5 -95.6-143.9 156.5 4.8 -3.0 4.4 24 24 A I E -a 70 0A 77 -2,-0.3 2,-0.3 45,-0.2 47,-0.2 -0.613 42.3-157.6 -73.3 124.8 6.5 0.4 4.5 25 25 A M - 0 0 67 45,-1.0 2,-0.1 -2,-0.4 44,-0.0 -0.798 26.7 -98.9-105.0 147.7 9.9 0.2 6.2 26 26 A K > - 0 0 144 -2,-0.3 4,-3.9 1,-0.1 5,-0.2 -0.444 35.8-123.7 -56.9 133.3 11.8 3.1 7.8 27 27 A K H > S+ 0 0 118 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.840 110.0 50.9 -53.6 -38.6 14.4 4.2 5.2 28 28 A T H > S+ 0 0 101 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.965 117.3 36.8 -65.2 -52.4 17.2 3.6 7.7 29 29 A D H > S+ 0 0 73 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.889 113.9 59.8 -66.6 -39.4 16.1 0.0 8.6 30 30 A F H X S+ 0 0 14 -4,-3.9 4,-2.0 1,-0.2 -1,-0.2 0.913 105.7 46.6 -52.5 -48.4 15.1 -0.5 5.0 31 31 A D H < S+ 0 0 91 -4,-2.3 4,-0.4 -5,-0.2 -1,-0.2 0.867 115.0 47.6 -64.8 -35.1 18.7 0.1 3.8 32 32 A K H < S+ 0 0 130 -4,-1.5 3,-0.3 1,-0.2 -2,-0.2 0.815 116.0 42.1 -78.7 -31.3 20.0 -2.2 6.5 33 33 A V H >< S+ 0 0 40 -4,-2.8 3,-2.2 1,-0.2 -2,-0.2 0.702 97.7 76.9 -85.2 -19.7 17.6 -5.0 5.8 34 34 A A G >< S+ 0 0 20 -4,-2.0 3,-1.4 -5,-0.3 -1,-0.2 0.741 82.5 68.8 -60.9 -21.9 18.0 -4.5 2.1 35 35 A S G 3 S+ 0 0 84 -4,-0.4 -1,-0.3 -3,-0.3 -2,-0.2 0.765 108.6 35.7 -65.8 -24.1 21.3 -6.3 2.6 36 36 A E G < S+ 0 0 42 -3,-2.2 55,-1.6 -4,-0.1 2,-0.3 -0.077 110.2 84.5-119.9 32.1 19.2 -9.4 3.3 37 37 A Y E < -B 90 0A 37 -3,-1.4 2,-0.3 53,-0.2 53,-0.2 -0.909 65.4-134.2-135.1 161.5 16.4 -8.6 0.8 38 38 A T E -B 89 0A 66 51,-3.5 51,-3.1 -2,-0.3 2,-0.6 -0.809 16.8-120.3-121.0 152.7 15.9 -9.1 -2.9 39 39 A K E +B 88 0A 98 -2,-0.3 49,-0.2 49,-0.2 3,-0.1 -0.834 27.3 170.5 -97.9 119.9 14.7 -6.9 -5.8 40 40 A I E - 0 0 79 47,-0.6 2,-0.2 -2,-0.6 -1,-0.1 0.413 65.2 -78.0-101.1 -4.1 11.6 -8.0 -7.6 41 41 A G E -B 87 0A 29 46,-0.5 46,-1.1 2,-0.0 -1,-0.4 -0.547 42.3 -85.8 131.8 165.7 11.4 -4.7 -9.4 42 42 A T E -B 86 0A 77 44,-0.2 2,-0.2 -2,-0.2 44,-0.2 -0.858 36.8-149.1-105.6 146.8 10.4 -1.1 -9.0 43 43 A I E -B 85 0A 21 42,-3.1 42,-2.7 -2,-0.4 2,-0.3 -0.698 15.4-176.2-112.6 164.8 6.9 0.1 -9.7 44 44 A S E -B 84 0A 68 40,-0.3 2,-0.4 -2,-0.2 40,-0.3 -0.917 24.0-121.7-151.1 172.9 5.6 3.5 -10.9 45 45 A T - 0 0 10 38,-2.3 2,-0.3 -2,-0.3 4,-0.1 -0.990 27.9-169.0-123.6 135.3 2.6 5.6 -11.7 46 46 A T + 0 0 124 -2,-0.4 2,-0.9 36,-0.1 36,-0.1 -0.929 52.4 8.2-128.3 149.6 2.0 7.0 -15.2 47 47 A G S S- 0 0 40 -2,-0.3 2,-0.3 33,-0.1 -2,-0.1 -0.789 113.1 -35.7 95.4-103.8 -0.4 9.6 -16.6 48 48 A E + 0 0 145 -2,-0.9 2,-0.3 32,-0.1 32,-0.2 -0.923 66.1 162.0-162.7 128.2 -2.2 11.4 -13.9 49 49 A M - 0 0 53 30,-1.8 32,-0.4 -2,-0.3 29,-0.1 -0.869 42.5 -94.8-141.9 169.7 -3.5 10.1 -10.5 50 50 A S > - 0 0 54 -2,-0.3 4,-3.0 1,-0.1 5,-0.3 -0.757 39.5-124.1 -86.7 143.3 -4.7 11.1 -7.1 51 51 A P H > S+ 0 0 17 0, 0.0 4,-2.0 0, 0.0 -1,-0.1 0.940 107.8 33.8 -56.8 -55.9 -1.8 11.0 -4.5 52 52 A L H > S+ 0 0 88 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.846 118.1 54.9 -70.8 -32.4 -3.4 8.7 -2.0 53 53 A D H > S+ 0 0 85 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.899 110.2 45.9 -68.4 -39.7 -5.2 6.7 -4.7 54 54 A A H X S+ 0 0 2 -4,-3.0 4,-2.8 2,-0.2 -2,-0.2 0.872 111.3 54.0 -69.1 -37.7 -1.9 6.1 -6.4 55 55 A R H X S+ 0 0 81 -4,-2.0 4,-3.4 -5,-0.3 -2,-0.2 0.982 111.4 43.2 -57.3 -57.6 -0.3 5.2 -3.1 56 56 A E H X S+ 0 0 116 -4,-2.7 4,-2.3 1,-0.2 5,-0.3 0.848 114.6 50.9 -60.8 -35.9 -2.9 2.6 -2.3 57 57 A D H X S+ 0 0 44 -4,-2.0 4,-1.9 -5,-0.2 -1,-0.2 0.921 114.5 43.8 -66.6 -42.8 -2.8 1.2 -5.9 58 58 A L H X S+ 0 0 5 -4,-2.8 4,-2.8 2,-0.2 5,-0.2 0.923 113.3 51.5 -65.5 -46.1 1.0 1.0 -5.7 59 59 A I H X S+ 0 0 60 -4,-3.4 4,-2.2 1,-0.2 -2,-0.2 0.928 114.6 40.5 -60.4 -49.7 1.0 -0.6 -2.3 60 60 A K H X S+ 0 0 96 -4,-2.3 4,-2.8 2,-0.2 -1,-0.2 0.887 115.1 53.3 -68.3 -37.5 -1.5 -3.3 -3.1 61 61 A K H X S+ 0 0 63 -4,-1.9 4,-1.7 -5,-0.3 -2,-0.2 0.900 110.0 46.8 -63.7 -44.5 0.1 -3.9 -6.5 62 62 A A H < S+ 0 0 0 -4,-2.8 5,-0.3 2,-0.2 -1,-0.2 0.926 114.9 46.4 -62.6 -45.2 3.5 -4.4 -4.9 63 63 A D H >< S+ 0 0 63 -4,-2.2 3,-1.6 -5,-0.2 4,-0.3 0.880 109.0 56.6 -63.8 -37.9 2.0 -6.7 -2.3 64 64 A E H 3< S+ 0 0 140 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.844 103.6 53.3 -61.6 -35.9 0.2 -8.5 -5.1 65 65 A K T 3< S- 0 0 150 -4,-1.7 -1,-0.3 -5,-0.1 -2,-0.2 0.373 129.4 -98.2 -83.2 4.6 3.5 -9.2 -6.9 66 66 A G < + 0 0 27 -3,-1.6 2,-0.3 1,-0.2 -3,-0.2 0.987 63.5 161.4 81.0 66.3 4.7 -10.7 -3.6 67 67 A A - 0 0 0 -5,-0.3 22,-0.3 -4,-0.3 -1,-0.2 -0.786 31.3-165.4-113.5 158.4 6.8 -8.1 -1.8 68 68 A D S S+ 0 0 11 20,-2.7 -45,-1.4 1,-0.4 2,-0.4 0.715 81.0 28.6-106.5 -40.5 7.8 -7.9 1.9 69 69 A V E -aC 23 88A 8 19,-2.7 19,-3.2 -47,-0.3 -1,-0.4 -0.975 65.6-170.9-126.5 137.8 9.0 -4.3 2.0 70 70 A V E -aC 24 87A 4 -47,-2.5 -45,-1.0 -2,-0.4 2,-0.4 -0.968 1.8-166.9-127.2 144.2 7.7 -1.4 -0.0 71 71 A V E - C 0 86A 11 15,-1.1 15,-1.7 -2,-0.4 2,-1.6 -0.989 21.8-137.5-133.8 127.0 9.1 2.2 -0.2 72 72 A L + 0 0 63 -2,-0.4 13,-0.2 13,-0.2 3,-0.1 -0.659 31.8 168.8 -80.4 88.6 7.5 5.2 -1.7 73 73 A T - 0 0 67 -2,-1.6 2,-0.3 11,-0.4 12,-0.2 0.867 67.3 -20.8 -70.7 -39.2 10.6 6.6 -3.5 74 74 A S S S+ 0 0 58 10,-2.5 -1,-0.2 -3,-0.2 9,-0.1 -0.889 94.1 90.2-153.9-176.7 8.5 9.1 -5.4 75 75 A G + 0 0 10 -2,-0.3 8,-0.1 8,-0.2 6,-0.1 0.483 58.8 113.4 96.3 5.0 4.9 9.7 -6.5 76 76 A Q + 0 0 106 1,-0.1 -24,-0.1 -4,-0.1 -4,-0.0 -0.032 47.2 98.7 -98.4 29.7 4.1 11.6 -3.4 77 77 A T S S- 0 0 100 1,-0.1 -1,-0.1 -26,-0.1 2,-0.1 0.958 85.2-111.5 -76.7 -81.1 3.6 14.9 -5.4 78 78 A E S S- 0 0 109 -29,-0.1 3,-0.2 -27,-0.1 -1,-0.1 -0.396 72.6 -16.6-176.8 -93.3 -0.1 15.2 -5.9 79 79 A N S S+ 0 0 71 1,-0.1 -30,-1.8 -29,-0.1 2,-1.7 0.859 125.4 58.5-102.8 -48.7 -1.9 14.9 -9.3 80 80 A K S S+ 0 0 161 -32,-0.2 2,-0.6 2,-0.1 -1,-0.1 -0.139 79.2 156.0 -76.8 44.0 0.9 15.2 -11.9 81 81 A I + 0 0 0 -2,-1.7 2,-0.1 -32,-0.4 -32,-0.1 -0.636 24.9 164.3 -85.4 117.9 2.6 12.3 -10.4 82 82 A H + 0 0 134 -2,-0.6 -36,-0.1 -36,-0.1 -1,-0.1 -0.551 39.0 155.0-116.4 59.8 5.0 10.2 -12.5 83 83 A G - 0 0 4 -9,-0.1 -38,-2.3 -8,-0.1 2,-0.4 -0.274 36.0-142.9 -95.5 174.6 6.4 8.6 -9.4 84 84 A T E -B 44 0A 57 -40,-0.3 -10,-2.5 -2,-0.1 2,-0.4 -0.993 3.5-159.9-137.7 139.8 8.2 5.4 -8.6 85 85 A A E -B 43 0A 1 -42,-2.7 -42,-3.1 -2,-0.4 2,-0.6 -0.988 13.9-145.1-122.5 133.1 8.1 3.1 -5.6 86 86 A D E -BC 42 71A 22 -15,-1.7 -15,-1.1 -2,-0.4 2,-0.3 -0.849 19.5-169.3-106.2 122.1 10.9 0.6 -4.9 87 87 A I E -BC 41 70A 2 -46,-1.1 -47,-0.6 -2,-0.6 -46,-0.5 -0.783 6.6-160.3-116.5 153.8 10.0 -2.7 -3.4 88 88 A Y E -BC 39 69A 39 -19,-3.2 -19,-2.7 -2,-0.3 -20,-2.7 -0.955 8.6-144.3-133.7 149.6 11.9 -5.6 -1.9 89 89 A K E -B 38 0A 52 -51,-3.1 -51,-3.5 -2,-0.3 -22,-0.1 -0.898 31.5-105.8-113.6 141.5 11.3 -9.3 -1.2 90 90 A K E -B 37 0A 76 -2,-0.4 -53,-0.2 -53,-0.2 2,-0.1 -0.380 32.1-134.8 -67.4 139.6 12.6 -11.1 1.9 91 91 A K - 0 0 83 -55,-1.6 -1,-0.1 2,-0.3 -55,-0.1 -0.264 22.1-110.7 -81.8 179.7 15.5 -13.5 1.4 92 92 A L S S+ 0 0 161 -2,-0.1 2,-0.3 -55,-0.0 -1,-0.1 0.558 99.9 51.3 -90.6 -9.0 15.7 -17.0 2.8 93 93 A E + 0 0 132 -57,-0.1 -2,-0.3 0, 0.0 2,-0.3 -0.846 61.9 164.6-123.8 160.1 18.5 -16.0 5.2 94 94 A H - 0 0 107 -2,-0.3 2,-0.3 2,-0.2 -61,-0.0 -0.955 49.5 -53.4-160.2 174.9 19.0 -13.1 7.6 95 95 A H S > S- 0 0 123 -2,-0.3 3,-0.5 2,-0.0 -59,-0.0 -0.446 96.4 -48.7 -59.0 117.0 21.1 -12.0 10.6 96 96 A H T 3 S- 0 0 167 -2,-0.3 2,-0.3 1,-0.2 -2,-0.2 0.027 82.4 -71.4 54.5-159.4 21.2 -14.7 13.2 97 97 A H T 3 S+ 0 0 176 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.698 90.8 97.2-133.0 81.3 17.9 -16.3 14.4 98 98 A H < 0 0 161 -3,-0.5 -3,-0.0 -2,-0.3 0, 0.0 -0.978 360.0 360.0-160.5 151.9 16.0 -13.7 16.4 99 99 A H 0 0 241 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.684 360.0 360.0-142.8 360.0 13.2 -11.2 16.1