==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-APR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 08-JUL-10 3NVE . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.I.APOSTOL,M.R.SAWAYA,D.EISENBERG . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1442.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 41.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 120 0, 0.0 11,-3.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 145.0 4.6 -3.3 15.8 2 2 A M E -A 11 0A 122 9,-0.2 2,-0.5 2,-0.0 9,-0.2 -0.983 360.0-175.4-128.9 115.3 4.3 -1.8 12.3 3 3 A H E -A 10 0A 105 7,-2.9 7,-2.7 -2,-0.4 2,-0.5 -0.966 5.4-172.9-117.3 128.0 4.6 -4.0 9.2 4 4 A F E +A 9 0A 135 -2,-0.5 2,-0.2 5,-0.2 5,-0.2 -0.973 26.4 140.3-117.5 115.7 4.5 -2.7 5.6 5 5 A G 0 0 29 3,-2.5 -2,-0.0 -2,-0.5 0, 0.0 -0.749 360.0 360.0-141.7-175.3 4.4 -5.2 2.8 6 6 A N 0 0 224 -2,-0.2 -1,-0.1 3,-0.0 0, 0.0 -0.377 360.0 360.0 -81.8 360.0 3.1 -6.4 -0.7 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B M 0 0 115 0, 0.0 -3,-2.5 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 145.1 -0.6 -4.4 2.9 9 2 B M E -A 4 0A 128 -5,-0.2 2,-0.4 2,-0.0 -5,-0.2 -0.994 360.0-172.3-139.8 134.5 -0.1 -2.7 6.3 10 3 B H E -A 3 0A 105 -7,-2.7 -7,-2.9 -2,-0.4 2,-0.6 -0.965 1.9-177.5-126.0 114.3 -0.4 -4.2 9.7 11 4 B F E +A 2 0A 115 -2,-0.4 -9,-0.2 -9,-0.2 2,-0.2 -0.955 31.4 129.1-108.3 116.1 -0.2 -1.9 12.8 12 5 B G 0 0 22 -11,-3.0 -2,-0.0 -2,-0.6 0, 0.0 -0.752 360.0 360.0-150.8-170.4 -0.5 -3.9 16.0 13 6 B N 0 0 222 -2,-0.2 0, 0.0 -11,-0.0 0, 0.0 -0.677 360.0 360.0-103.5 360.0 1.0 -4.7 19.4