==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 11-FEB-03 1NY4 . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S28E; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR J.M.ARAMINI,J.R.CORT,Y.J.HUANG,R.XIAO,T.B.ACTON,C.K.HO,L.- . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6952.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 46.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 26.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 203 0, 0.0 2,-2.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 46.5 -1.6 -5.9 -21.7 2 2 A A + 0 0 95 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.338 360.0 127.1 80.7 -56.3 0.3 -9.0 -21.0 3 3 A E + 0 0 155 -2,-2.2 -1,-0.2 1,-0.2 0, 0.0 -0.052 15.5 140.5 -36.7 116.5 2.5 -7.1 -18.5 4 4 A D + 0 0 117 -3,-0.1 -1,-0.2 3,-0.1 3,-0.1 0.084 31.4 108.1-151.2 20.5 2.3 -9.2 -15.4 5 5 A E S S+ 0 0 200 1,-0.2 2,-0.2 2,-0.0 -2,-0.1 0.279 89.3 31.3 -85.5 10.1 5.8 -9.0 -14.1 6 6 A G S S- 0 0 30 2,-0.0 -1,-0.2 50,-0.0 52,-0.1 -0.811 70.3-146.4-170.0 125.1 4.6 -6.7 -11.4 7 7 A Y - 0 0 75 50,-0.3 50,-1.5 -2,-0.2 2,-0.1 -0.871 21.0-141.6-101.4 116.9 1.3 -6.5 -9.5 8 8 A P E -A 56 0A 38 0, 0.0 24,-2.9 0, 0.0 25,-0.8 -0.422 12.2-154.0 -74.9 149.5 0.3 -2.9 -8.5 9 9 A A E -AB 55 31A 1 46,-2.0 46,-2.1 22,-0.3 2,-0.4 -0.992 2.4-147.8-129.3 133.2 -1.3 -2.3 -5.1 10 10 A E E -AB 54 30A 62 20,-2.4 20,-3.0 -2,-0.4 44,-0.2 -0.845 29.4-106.9-102.9 134.8 -3.6 0.6 -4.2 11 11 A V E + B 0 29A 4 42,-2.4 41,-0.7 -2,-0.4 18,-0.3 -0.370 36.2 176.5 -59.5 127.6 -3.7 2.0 -0.7 12 12 A I E - 0 0 67 16,-2.1 2,-0.3 1,-0.4 17,-0.2 0.762 67.1 -8.4-101.3 -37.8 -6.9 0.9 1.0 13 13 A E E - B 0 28A 138 15,-1.5 15,-2.4 37,-0.0 -1,-0.4 -0.955 64.2-124.1-162.9 143.0 -6.2 2.4 4.4 14 14 A I E - B 0 27A 66 -2,-0.3 13,-0.2 13,-0.2 15,-0.0 -0.736 12.9-165.8 -93.2 138.6 -3.4 4.2 6.3 15 15 A I - 0 0 90 11,-1.1 2,-0.3 -2,-0.4 12,-0.2 0.951 40.6-113.9 -83.9 -62.8 -2.2 2.8 9.6 16 16 A G - 0 0 33 10,-1.5 10,-0.5 32,-0.0 -1,-0.3 -0.944 49.7 -22.3 163.7-140.5 -0.1 5.6 10.9 17 17 A R - 0 0 182 -2,-0.3 8,-0.3 8,-0.2 7,-0.0 -0.477 33.7-178.8 -98.7 171.7 3.5 6.4 11.7 18 18 A T + 0 0 65 6,-2.5 7,-0.2 -2,-0.2 -1,-0.1 0.531 18.2 163.7-135.3 -46.6 6.4 4.0 12.5 19 19 A G + 0 0 16 5,-1.4 2,-2.9 1,-0.2 3,-0.4 -0.181 40.9 93.5 55.0-145.8 9.5 6.1 13.1 20 20 A T S S+ 0 0 150 1,-0.3 -1,-0.2 3,-0.1 0, 0.0 -0.367 94.2 47.5 63.7 -76.0 12.3 4.2 14.9 21 21 A T S S- 0 0 110 -2,-2.9 -1,-0.3 1,-0.1 -2,-0.1 0.869 146.0 -53.6 -60.4 -38.6 14.0 3.3 11.6 22 22 A G S S- 0 0 24 -3,-0.4 -1,-0.1 2,-0.0 -3,-0.1 0.132 94.8 -49.4 155.9 76.3 13.6 6.9 10.5 23 23 A D S S- 0 0 109 1,-0.1 24,-0.8 -5,-0.1 2,-0.1 0.905 82.8-175.8 43.9 52.0 10.2 8.5 10.5 24 24 A V E - C 0 46A 4 22,-0.2 -6,-2.5 -5,-0.1 -5,-1.4 -0.367 16.5-149.3 -76.1 157.9 8.8 5.5 8.7 25 25 A T E - C 0 45A 16 20,-2.7 20,-2.5 -8,-0.3 2,-0.4 -0.949 3.9-156.5-136.1 113.5 5.2 5.3 7.6 26 26 A Q E + C 0 44A 43 -10,-0.5 -10,-1.5 -2,-0.4 -11,-1.1 -0.746 18.4 173.9 -91.7 133.1 3.3 2.0 7.4 27 27 A V E -BC 14 43A 13 16,-3.0 16,-2.2 -2,-0.4 2,-0.5 -0.967 28.0-124.8-137.9 152.4 0.3 1.9 5.1 28 28 A K E +BC 13 42A 69 -15,-2.4 -16,-2.1 -2,-0.3 -15,-1.5 -0.851 30.6 178.3-101.4 131.3 -2.0 -0.9 4.0 29 29 A V E -BC 11 41A 11 12,-1.9 12,-3.2 -2,-0.5 2,-0.3 -0.940 16.9-141.4-131.5 152.9 -2.5 -1.5 0.3 30 30 A R E -BC 10 40A 124 -20,-3.0 -20,-2.4 -2,-0.3 2,-0.3 -0.875 28.1-103.9-116.2 148.2 -4.5 -4.1 -1.7 31 31 A I E -B 9 0A 10 8,-1.5 7,-0.4 -2,-0.3 -22,-0.3 -0.519 23.3-166.2 -70.9 130.1 -3.5 -5.9 -4.9 32 32 A L S S- 0 0 71 -24,-2.9 2,-0.3 1,-0.3 -1,-0.2 0.772 70.2 -20.7 -85.5 -30.2 -5.2 -4.4 -7.9 33 33 A E S S+ 0 0 129 -25,-0.8 -1,-0.3 1,-0.1 3,-0.1 -0.973 76.4 110.4-168.9 167.5 -4.3 -7.4 -10.1 34 34 A G S S- 0 0 12 -2,-0.3 2,-2.9 1,-0.1 3,-0.4 0.703 94.8 -65.6 117.1 66.8 -2.0 -10.4 -10.4 35 35 A R S S+ 0 0 246 1,-0.3 -1,-0.1 2,-0.1 0, 0.0 -0.369 139.9 53.8 64.5 -75.3 -3.8 -13.7 -9.9 36 36 A D S S+ 0 0 97 -2,-2.9 -1,-0.3 -3,-0.1 -2,-0.1 0.953 76.3 169.8 -50.6 -58.4 -4.5 -12.9 -6.2 37 37 A K + 0 0 134 -3,-0.4 -5,-0.2 1,-0.1 -3,-0.1 0.904 62.5 50.0 39.0 89.1 -6.1 -9.6 -7.1 38 38 A G S S+ 0 0 46 -7,-0.4 2,-0.6 1,-0.2 -6,-0.1 0.629 71.2 139.0 123.5 39.1 -7.6 -8.7 -3.7 39 39 A R - 0 0 158 -8,-0.1 -8,-1.5 -6,-0.1 2,-0.5 -0.951 35.4-157.0-117.2 114.8 -4.8 -9.1 -1.3 40 40 A V E +C 30 0A 79 -2,-0.6 -10,-0.3 -10,-0.3 2,-0.3 -0.775 22.5 164.6 -92.7 130.0 -4.4 -6.5 1.4 41 41 A I E -C 29 0A 47 -12,-3.2 -12,-1.9 -2,-0.5 2,-0.6 -0.799 37.3-115.1-135.0 175.8 -1.0 -6.1 3.0 42 42 A R E -C 28 0A 168 -2,-0.3 2,-0.4 -14,-0.2 -14,-0.2 -0.916 30.7-174.3-122.3 103.6 1.0 -3.6 5.1 43 43 A R E -C 27 0A 42 -16,-2.2 -16,-3.0 -2,-0.6 2,-0.5 -0.781 13.7-145.2 -99.4 140.7 3.9 -2.0 3.4 44 44 A N E +C 26 0A 53 -2,-0.4 2,-0.3 -18,-0.2 -18,-0.2 -0.915 31.1 151.9-108.5 127.3 6.3 0.3 5.3 45 45 A V E -C 25 0A 81 -20,-2.5 -20,-2.7 -2,-0.5 2,-0.4 -0.937 45.1 -96.0-146.8 166.0 7.8 3.2 3.5 46 46 A R E S+C 24 0A 180 -2,-0.3 -22,-0.2 -22,-0.2 -23,-0.1 -0.719 83.6 28.0 -90.2 135.1 9.2 6.7 4.2 47 47 A G S S- 0 0 35 -24,-0.8 -2,-0.2 -2,-0.4 -22,-0.0 -0.244 89.2 -68.3 104.5 166.1 6.9 9.7 3.8 48 48 A P - 0 0 122 0, 0.0 2,-0.3 0, 0.0 -23,-0.1 0.165 45.6-160.6 -75.0-162.6 3.1 10.2 4.0 49 49 A V - 0 0 28 4,-0.0 2,-0.3 2,-0.0 -35,-0.1 -0.966 11.2-135.3-171.0 171.7 0.5 8.9 1.6 50 50 A R > - 0 0 202 -2,-0.3 3,-2.6 -37,-0.0 -39,-0.2 -0.974 39.4 -92.9-147.9 129.2 -3.1 9.4 0.4 51 51 A V T 3 S+ 0 0 102 -2,-0.3 -39,-0.1 1,-0.3 3,-0.1 -0.101 114.3 40.8 -40.3 122.3 -5.8 6.9 -0.2 52 52 A G T 3 S+ 0 0 29 -41,-0.7 -1,-0.3 1,-0.4 -40,-0.1 -0.086 77.8 138.0 124.4 -31.5 -5.6 6.0 -3.9 53 53 A D < - 0 0 70 -3,-2.6 -42,-2.4 -43,-0.1 -1,-0.4 -0.014 38.2-153.4 -43.7 150.3 -1.8 5.8 -4.1 54 54 A I E +A 10 0A 86 -44,-0.2 2,-0.3 -3,-0.1 -44,-0.2 -0.996 20.3 164.3-136.0 139.8 -0.5 2.9 -6.2 55 55 A L E -A 9 0A 117 -46,-2.1 -46,-2.0 -2,-0.4 2,-0.2 -0.968 29.8-127.1-156.3 138.1 2.7 1.0 -6.0 56 56 A I E -A 8 0A 92 -2,-0.3 2,-0.7 -48,-0.3 4,-0.1 -0.610 14.0-142.9 -87.3 146.9 4.0 -2.4 -7.4 57 57 A L + 0 0 19 -50,-1.5 -50,-0.3 -2,-0.2 -1,-0.0 -0.802 25.2 169.4-112.9 87.4 5.6 -4.9 -5.1 58 58 A R S S- 0 0 211 -2,-0.7 -1,-0.2 -52,-0.1 -2,-0.0 0.728 91.2 -20.8 -67.4 -22.3 8.4 -6.5 -7.1 59 59 A E - 0 0 140 -3,-0.1 -2,-0.1 3,-0.0 -1,-0.1 0.363 68.2-148.8-150.8 -47.9 9.5 -8.1 -3.8 60 60 A T - 0 0 41 -4,-0.1 -3,-0.0 2,-0.0 -2,-0.0 0.394 40.0-129.7 80.0 -3.1 8.1 -6.1 -0.9 61 61 A E - 0 0 116 1,-0.1 -2,-0.0 2,-0.0 -4,-0.0 0.165 18.1-149.4 47.8-175.4 11.3 -7.1 1.0 62 62 A R - 0 0 215 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.322 4.3-155.7-150.2 -59.8 11.0 -8.6 4.4 63 63 A E - 0 0 124 1,-0.2 2,-0.7 2,-0.1 3,-0.3 0.995 8.6-172.5 65.1 79.3 14.0 -7.9 6.6 64 64 A A + 0 0 70 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 -0.464 26.9 148.2-100.1 58.5 14.0 -10.7 9.2 65 65 A R - 0 0 209 -2,-0.7 -1,-0.2 -3,-0.1 3,-0.1 0.967 27.0-171.8 -54.5 -60.4 16.8 -9.2 11.3 66 66 A E - 0 0 162 -3,-0.3 -2,-0.1 1,-0.1 -3,-0.0 0.991 30.1-123.2 61.3 65.2 15.4 -10.7 14.5 67 67 A I - 0 0 132 1,-0.2 3,-0.5 2,-0.1 -1,-0.1 -0.133 16.2-152.6 -41.3 113.9 17.7 -8.9 16.9 68 68 A K S S+ 0 0 191 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.846 87.3 77.1 -61.0 -34.9 19.3 -11.8 18.8 69 69 A S + 0 0 77 2,-0.0 -1,-0.2 1,-0.0 -2,-0.1 0.900 67.4 171.3 -38.7 -60.8 19.8 -9.4 21.7 70 70 A R 0 0 219 -3,-0.5 -2,-0.1 1,-0.1 -1,-0.0 0.920 360.0 360.0 41.3 88.0 16.1 -9.7 22.6 71 71 A R 0 0 280 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.776 360.0 360.0-122.5 360.0 16.0 -7.9 25.9