==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-FEB-03 1NY8 . COMPND 2 MOLECULE: PROTEIN YRBA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR G.V.T.SWAPNA,J.Y.HUANG,T.B.ACTON,R.SHASTRY,Y.-W.CHIANG, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7632.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 61.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 29.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 237 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 45.9 2.1 0.0 -1.2 2 2 A I + 0 0 150 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.777 360.0 143.2-171.6 122.5 -0.5 -1.9 -3.3 3 3 A E + 0 0 175 -2,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.825 10.6 130.9-168.0 124.3 -3.8 -0.7 -4.8 4 4 A D - 0 0 123 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.560 39.4-138.0-179.8 108.7 -5.6 -1.6 -8.0 5 5 A P + 0 0 125 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.486 40.8 137.6 -75.0 141.9 -9.2 -2.7 -8.5 6 6 A M - 0 0 139 -2,-0.2 3,-0.1 0, 0.0 -2,-0.0 -0.327 29.1-162.2 173.4 95.9 -9.9 -5.5 -10.9 7 7 A E + 0 0 156 1,-0.2 0, 0.0 2,-0.1 0, 0.0 0.492 55.1 104.7 -60.3-146.9 -12.4 -8.3 -10.4 8 8 A N > + 0 0 61 1,-0.0 4,-0.9 4,-0.0 -1,-0.2 0.423 55.1 109.7 81.2 -0.7 -12.3 -11.5 -12.4 9 9 A N H > + 0 0 102 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.752 69.8 60.4 -75.4 -25.6 -10.8 -13.1 -9.3 10 10 A E H > S+ 0 0 129 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.958 108.1 40.3 -65.4 -53.4 -14.0 -15.1 -8.8 11 11 A I H > S+ 0 0 15 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.741 116.1 55.2 -66.9 -23.1 -13.7 -16.8 -12.2 12 12 A Q H X S+ 0 0 57 -4,-0.9 4,-2.1 2,-0.2 -2,-0.2 0.876 109.1 44.4 -76.2 -40.3 -10.0 -17.2 -11.4 13 13 A S H X S+ 0 0 59 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.855 117.7 45.2 -71.4 -36.7 -10.6 -18.9 -8.1 14 14 A V H X S+ 0 0 17 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.835 112.6 51.6 -74.3 -34.6 -13.3 -21.1 -9.6 15 15 A L H X S+ 0 0 3 -4,-1.6 4,-2.5 -5,-0.2 -2,-0.2 0.883 114.6 42.7 -68.3 -39.9 -11.1 -21.8 -12.6 16 16 A M H X S+ 0 0 65 -4,-2.1 4,-0.5 2,-0.2 -2,-0.2 0.884 116.2 47.2 -72.7 -40.9 -8.2 -22.7 -10.3 17 17 A N H < S+ 0 0 130 -4,-2.4 -2,-0.2 2,-0.2 -1,-0.2 0.873 114.3 48.8 -67.5 -38.4 -10.4 -24.7 -8.0 18 18 A A H < S- 0 0 11 -4,-2.5 -2,-0.2 1,-0.2 2,-0.2 0.966 139.8 -36.5 -64.9 -54.8 -12.0 -26.5 -10.9 19 19 A L H < - 0 0 50 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 -0.633 60.8-160.7-176.7 112.2 -8.7 -27.3 -12.6 20 20 A S < + 0 0 56 -4,-0.5 17,-0.1 -2,-0.2 3,-0.1 0.299 14.5 170.8 -75.4-152.2 -5.5 -25.3 -12.7 21 21 A L - 0 0 21 18,-0.1 20,-0.3 20,-0.1 18,-0.2 -0.055 65.7 -67.4 172.7 -49.8 -2.7 -25.8 -15.2 22 22 A Q S S+ 0 0 133 16,-0.6 17,-0.3 1,-0.5 2,-0.2 -0.158 104.3 21.4 173.7 -62.8 -0.2 -22.9 -14.8 23 23 A E E -A 38 0A 117 15,-2.4 15,-1.3 -3,-0.1 -1,-0.5 -0.705 61.6-140.8-123.3 174.9 -1.6 -19.6 -15.9 24 24 A V E -A 37 0A 33 13,-0.3 2,-0.3 -2,-0.2 13,-0.2 -0.960 5.1-163.0-138.2 154.2 -5.1 -18.0 -16.3 25 25 A H E -A 36 0A 84 11,-1.5 11,-2.4 -2,-0.3 2,-1.1 -0.851 4.1-176.2-143.3 102.1 -6.7 -15.7 -18.8 26 26 A V E +A 35 0A 47 -2,-0.3 9,-0.2 9,-0.2 2,-0.1 -0.638 27.8 160.8 -98.9 74.0 -9.9 -13.9 -17.9 27 27 A S E +A 34 0A 48 7,-2.2 7,-0.5 -2,-1.1 2,-0.3 -0.360 4.3 122.8 -88.7 171.5 -10.5 -12.1 -21.2 28 28 A G E -A 33 0A 33 5,-0.3 5,-0.3 -2,-0.1 42,-0.0 -0.978 55.5-108.7 166.5-164.3 -13.8 -10.7 -22.5 29 29 A D S S- 0 0 151 3,-1.4 4,-0.1 -2,-0.3 -1,-0.1 0.655 74.8 -64.0-121.7 -59.5 -15.5 -7.6 -23.7 30 30 A G S S+ 0 0 55 2,-0.4 3,-0.1 0, 0.0 -2,-0.0 0.244 123.9 20.5-164.6 -42.8 -18.0 -6.4 -21.1 31 31 A S S S+ 0 0 90 1,-0.3 38,-0.9 37,-0.1 2,-0.5 0.821 121.3 45.3-104.5 -58.3 -20.7 -9.0 -20.6 32 32 A H E - b 0 69A 100 36,-0.2 -3,-1.4 38,-0.1 -2,-0.4 -0.809 69.2-177.5 -95.1 126.8 -19.3 -12.2 -21.9 33 33 A F E -Ab 28 70A 49 36,-2.3 38,-1.7 -2,-0.5 2,-0.5 -0.984 20.0-137.5-128.2 136.2 -15.8 -13.1 -20.9 34 34 A Q E -Ab 27 71A 13 -7,-0.5 -7,-2.2 -2,-0.4 2,-0.8 -0.799 9.9-159.0 -94.7 127.8 -13.6 -16.1 -21.9 35 35 A V E -Ab 26 72A 1 36,-2.3 38,-1.8 -2,-0.5 2,-0.5 -0.831 13.9-176.2-108.8 92.5 -11.6 -17.7 -19.1 36 36 A I E -Ab 25 73A 0 -11,-2.4 -11,-1.5 -2,-0.8 2,-0.7 -0.784 17.4-142.8 -92.7 127.6 -8.8 -19.6 -20.8 37 37 A A E -Ab 24 74A 2 36,-1.5 38,-1.5 -2,-0.5 -13,-0.3 -0.817 15.4-152.4 -93.7 117.5 -6.6 -21.6 -18.5 38 38 A V E +A 23 0A 4 -15,-1.3 -15,-2.4 -2,-0.7 -16,-0.6 -0.603 50.2 83.3 -88.8 149.6 -2.9 -21.6 -19.5 39 39 A G S S- 0 0 5 36,-0.3 -17,-0.1 -17,-0.3 -18,-0.1 -0.751 76.4-104.7 165.3-111.7 -0.6 -24.4 -18.7 40 40 A E S > S+ 0 0 128 -2,-0.2 3,-2.8 36,-0.1 36,-0.1 0.139 87.8 97.3 178.2 -32.4 -0.1 -27.7 -20.6 41 41 A L T 3 S+ 0 0 106 1,-0.3 2,-0.5 -20,-0.3 4,-0.1 0.899 95.7 41.8 -38.8 -58.4 -1.8 -30.4 -18.5 42 42 A F T 3 S+ 0 0 13 1,-0.1 2,-1.1 33,-0.1 -1,-0.3 -0.128 83.4 125.4 -84.8 38.4 -4.8 -30.1 -20.8 43 43 A D S < S+ 0 0 86 -3,-2.8 -1,-0.1 -2,-0.5 32,-0.1 -0.595 83.9 15.1 -98.5 70.1 -2.5 -29.9 -23.8 44 44 A G S S+ 0 0 75 -2,-1.1 -1,-0.2 1,-0.3 -2,-0.1 0.109 94.3 123.0 153.7 -21.2 -4.0 -32.7 -25.8 45 45 A M S S- 0 0 85 -4,-0.1 2,-0.3 1,-0.1 -1,-0.3 -0.096 71.2 -90.7 -61.5 164.4 -7.3 -33.4 -24.1 46 46 A S > - 0 0 74 1,-0.1 4,-4.2 4,-0.0 5,-0.2 -0.636 25.6-127.3 -82.5 134.8 -10.6 -33.2 -26.0 47 47 A R H > S+ 0 0 133 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 0.813 114.4 44.6 -47.0 -34.0 -12.3 -29.9 -26.1 48 48 A V H > S+ 0 0 84 2,-0.2 4,-3.0 3,-0.2 -1,-0.2 0.976 114.1 44.2 -74.9 -61.0 -15.3 -31.8 -24.9 49 49 A K H > S+ 0 0 117 2,-0.2 4,-2.3 3,-0.2 -2,-0.2 0.824 120.1 48.3 -52.6 -32.9 -13.7 -33.9 -22.3 50 50 A K H X S+ 0 0 5 -4,-4.2 4,-2.8 2,-0.2 5,-0.4 0.993 112.8 40.4 -70.1 -76.3 -11.9 -30.7 -21.3 51 51 A Q H X S+ 0 0 74 -4,-2.2 4,-1.6 2,-0.2 -2,-0.2 0.788 119.6 54.5 -42.4 -32.3 -14.8 -28.2 -21.1 52 52 A Q H >X S+ 0 0 117 -4,-3.0 4,-2.9 2,-0.2 3,-1.5 0.999 111.5 36.1 -66.0 -75.0 -16.6 -31.1 -19.5 53 53 A T H 3< S+ 0 0 60 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.708 121.1 53.9 -51.9 -19.9 -14.3 -32.0 -16.6 54 54 A V H 3X S+ 0 0 3 -4,-2.8 4,-1.2 -5,-0.2 -1,-0.3 0.793 112.0 41.4 -84.2 -32.2 -13.7 -28.3 -16.5 55 55 A Y H << S+ 0 0 89 -4,-1.6 -2,-0.2 -3,-1.5 -3,-0.2 0.708 98.0 78.2 -85.8 -23.8 -17.4 -27.6 -16.2 56 56 A G T >< S+ 0 0 46 -4,-2.9 3,-0.6 2,-0.2 4,-0.3 0.920 107.9 28.0 -48.9 -52.8 -18.0 -30.4 -13.8 57 57 A P T >4 S+ 0 0 67 0, 0.0 3,-0.7 0, 0.0 4,-0.4 0.952 128.9 41.4 -75.0 -53.9 -16.6 -28.4 -10.9 58 58 A L T 3X S+ 0 0 2 -4,-1.2 4,-0.6 1,-0.2 -2,-0.2 -0.150 88.7 105.6 -86.8 39.1 -17.4 -25.0 -12.2 59 59 A M H <> S+ 0 0 89 -3,-0.6 4,-2.1 -2,-0.4 -1,-0.2 0.880 82.4 36.5 -84.0 -43.8 -20.8 -26.4 -13.3 60 60 A E H <> S+ 0 0 152 -3,-0.7 4,-2.1 -4,-0.3 5,-0.3 0.984 113.8 53.6 -71.9 -62.4 -22.9 -24.8 -10.6 61 61 A Y H > S+ 0 0 108 -4,-0.4 4,-2.4 1,-0.3 -1,-0.2 0.851 116.4 42.0 -38.9 -47.3 -21.1 -21.5 -10.2 62 62 A I H X S+ 0 0 26 -4,-0.6 4,-2.3 2,-0.2 -1,-0.3 0.940 103.6 65.1 -67.6 -49.2 -21.6 -21.0 -13.9 63 63 A A H < S+ 0 0 47 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.844 114.2 34.7 -40.2 -41.7 -25.1 -22.3 -13.9 64 64 A D H >< S+ 0 0 123 -4,-2.1 3,-1.8 1,-0.2 -1,-0.3 0.873 109.6 62.4 -81.5 -41.6 -25.8 -19.2 -11.8 65 65 A N H >< S+ 0 0 25 -4,-2.4 3,-4.7 -5,-0.3 -2,-0.2 0.696 72.8 104.5 -56.5 -18.0 -23.4 -17.1 -13.6 66 66 A R T 3< + 0 0 209 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.1 0.779 55.4 84.6 -32.2 -37.9 -25.7 -17.8 -16.5 67 67 A I T < S+ 0 0 125 -3,-1.8 -1,-0.3 -5,-0.1 -2,-0.1 0.785 109.3 11.8 -37.7 -32.8 -26.8 -14.2 -15.9 68 68 A H S < S- 0 0 101 -3,-4.7 2,-0.3 -6,-0.2 -36,-0.2 -0.206 95.5 -91.8-122.2-147.4 -23.8 -13.5 -18.1 69 69 A A E +b 32 0A 44 -38,-0.9 -36,-2.3 -2,-0.1 2,-1.0 -0.730 38.6 171.0-143.0 87.9 -21.5 -15.4 -20.3 70 70 A V E -b 33 0A 21 -2,-0.3 -36,-0.2 -38,-0.2 -38,-0.1 -0.800 17.9-166.6-102.5 91.4 -18.3 -16.7 -18.6 71 71 A S E -b 34 0A 57 -38,-1.7 -36,-2.3 -2,-1.0 2,-0.3 -0.283 2.2-164.2 -73.3 161.7 -16.7 -19.0 -21.1 72 72 A I E +b 35 0A 6 -38,-0.2 2,-0.3 -46,-0.0 -36,-0.2 -0.985 16.0 162.5-151.5 138.8 -13.9 -21.4 -20.1 73 73 A K E -b 36 0A 43 -38,-1.8 -36,-1.5 -2,-0.3 2,-0.9 -0.856 30.5-137.7-161.5 120.8 -11.3 -23.3 -22.0 74 74 A A E +b 37 0A 2 -2,-0.3 2,-0.2 -38,-0.2 -36,-0.2 -0.728 47.9 141.6 -84.6 107.0 -8.1 -25.0 -20.8 75 75 A Y - 0 0 26 -38,-1.5 -36,-0.3 -2,-0.9 -33,-0.1 -0.764 48.2 -89.1-135.6-179.8 -5.5 -24.2 -23.5 76 76 A T > - 0 0 21 -2,-0.2 4,-0.6 -38,-0.2 -1,-0.1 -0.158 40.1-103.4 -84.0-177.7 -1.8 -23.3 -23.9 77 77 A P H > S+ 0 0 83 0, 0.0 4,-0.9 0, 0.0 3,-0.2 0.868 124.5 37.5 -75.0 -39.3 -0.2 -19.9 -24.0 78 78 A A H > S+ 0 0 71 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.735 105.6 69.7 -82.1 -25.5 0.3 -19.9 -27.7 79 79 A E H > S+ 0 0 55 2,-0.2 4,-1.9 3,-0.2 -1,-0.2 0.778 96.4 56.5 -61.8 -27.2 -3.1 -21.7 -28.2 80 80 A W H >X S+ 0 0 15 -4,-0.6 4,-3.8 -3,-0.2 3,-0.8 0.997 108.9 39.5 -66.2 -76.0 -4.7 -18.4 -27.1 81 81 A A H 3X S+ 0 0 41 -4,-0.9 4,-2.5 1,-0.3 5,-0.2 0.884 120.4 48.1 -38.2 -54.1 -3.2 -16.1 -29.6 82 82 A R H 3X S+ 0 0 156 -4,-2.4 4,-0.9 1,-0.2 -1,-0.3 0.876 114.1 46.8 -56.2 -40.5 -3.7 -18.8 -32.2 83 83 A D H <<>S+ 0 0 12 -4,-1.9 6,-1.0 -3,-0.8 5,-0.6 0.918 115.2 44.6 -67.6 -45.0 -7.2 -19.3 -31.0 84 84 A R H <5S+ 0 0 127 -4,-3.8 -2,-0.2 1,-0.2 -1,-0.2 0.734 114.5 50.8 -70.2 -23.3 -7.9 -15.6 -31.0 85 85 A K H <5S+ 0 0 154 -4,-2.5 -1,-0.2 -5,-0.5 -2,-0.2 0.629 102.0 80.2 -86.8 -16.8 -6.2 -15.4 -34.4 86 86 A L T <5S- 0 0 72 -4,-0.9 4,-0.2 -3,-0.4 6,-0.1 0.135 98.8-102.0 -73.3-165.0 -8.4 -18.3 -35.6 87 87 A N T 5S+ 0 0 97 2,-0.1 -3,-0.1 3,-0.1 -4,-0.1 0.083 111.9 69.2-109.2 19.1 -12.0 -17.9 -36.7 88 88 A G S