==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 20-NOV-06 2NY8 . COMPND 2 MOLECULE: DEFENSIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; . AUTHOR C.LANDON,F.BARBAULT,F.VOVELLE . 40 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3195.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 7.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 X A > 0 0 96 0, 0.0 3,-1.8 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 152.2 4.9 6.6 1.5 2 2 X T T 3 - 0 0 65 1,-0.2 11,-2.9 10,-0.1 12,-0.8 -0.398 360.0 -31.0 62.4-127.9 2.9 3.4 1.9 3 3 X a T 3 S+ 0 0 7 9,-0.2 31,-0.4 31,-0.2 2,-0.3 0.023 96.5 135.4-111.9 26.3 0.2 3.2 -0.9 4 4 X D < + 0 0 87 -3,-1.8 28,-0.1 1,-0.2 9,-0.1 -0.602 12.7 153.8 -77.9 130.6 -0.3 7.0 -1.1 5 5 X L > + 0 0 68 -2,-0.3 3,-1.0 1,-0.1 2,-0.3 0.617 15.2 177.8-124.7 -36.3 -0.5 8.2 -4.7 6 6 X A T 3 S- 0 0 92 1,-0.3 -1,-0.1 3,-0.1 3,-0.1 -0.476 76.8 -4.7 65.1-120.0 -2.6 11.4 -4.5 7 7 X S T 3 S- 0 0 132 -2,-0.3 -1,-0.3 1,-0.2 2,-0.2 0.949 119.1 -87.2 -69.9 -49.0 -2.8 12.8 -8.0 8 8 X G < + 0 0 52 -3,-1.0 -1,-0.2 3,-0.0 3,-0.1 -0.526 60.4 150.0 146.0 146.5 -0.4 10.3 -9.6 9 9 X F S S- 0 0 147 1,-0.3 2,-0.3 -2,-0.2 -3,-0.1 0.249 70.6 -72.2-167.8 -28.4 3.2 9.6 -10.2 10 10 X G S S- 0 0 51 -5,-0.1 2,-0.3 0, 0.0 -1,-0.3 -0.918 80.2 -19.6 161.2-130.2 3.6 5.8 -10.2 11 11 X V - 0 0 110 -2,-0.3 -7,-0.1 1,-0.2 -8,-0.1 -0.866 55.7-132.6-114.8 147.4 3.5 3.2 -7.5 12 12 X G - 0 0 23 -2,-0.3 -9,-0.2 -9,-0.1 -1,-0.2 0.395 50.8 -66.2 -73.4-147.0 4.0 3.7 -3.8 13 13 X S - 0 0 57 -11,-2.9 -10,-0.2 1,-0.1 -2,-0.0 0.864 50.6-160.6 -75.0 -38.3 6.2 1.7 -1.4 14 14 X S > + 0 0 44 -12,-0.8 4,-2.3 1,-0.1 5,-0.2 0.540 53.8 123.5 66.1 8.7 4.1 -1.5 -1.8 15 15 X L H > + 0 0 123 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.879 67.9 56.4 -64.6 -38.2 5.8 -2.7 1.4 16 16 X b H > S+ 0 0 35 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.930 109.7 43.6 -59.2 -49.2 2.3 -3.1 3.0 17 17 X A H > S+ 0 0 17 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.936 116.3 46.8 -63.2 -47.9 1.2 -5.5 0.2 18 18 X A H X S+ 0 0 51 -4,-2.3 4,-2.9 1,-0.2 -2,-0.2 0.886 108.3 56.8 -61.1 -40.4 4.4 -7.4 0.2 19 19 X H H < S+ 0 0 134 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.887 107.3 48.6 -58.6 -41.2 4.3 -7.6 4.0 20 20 X c H >X>S+ 0 0 9 -4,-1.7 4,-2.0 1,-0.2 5,-1.4 0.898 110.9 50.1 -66.3 -41.4 0.9 -9.3 3.8 21 21 X I H 3<5S+ 0 0 98 -4,-2.0 2,-1.6 1,-0.3 -2,-0.2 0.924 103.4 60.2 -62.6 -45.3 2.2 -11.7 1.2 22 22 X A T 3<5S+ 0 0 87 -4,-2.9 -1,-0.3 1,-0.2 -2,-0.1 -0.178 112.9 38.9 -78.4 45.7 5.2 -12.6 3.4 23 23 X R T <45S- 0 0 156 -2,-1.6 -2,-0.2 -3,-0.7 -1,-0.2 0.294 130.6 -66.0-154.1 -55.0 2.8 -13.8 6.1 24 24 X R T <5S+ 0 0 184 -4,-2.0 -3,-0.2 1,-0.3 -4,-0.1 0.178 92.4 112.8 178.9 -29.4 -0.2 -15.6 4.7 25 25 X Y < - 0 0 65 -5,-1.4 15,-0.3 15,-0.2 -2,-0.3 -0.337 64.5-134.7 -64.1 143.9 -2.2 -13.2 2.7 26 26 X R S S- 0 0 204 13,-1.3 2,-0.3 1,-0.2 14,-0.2 0.892 70.3 -69.1 -64.3 -39.9 -2.4 -13.7 -1.1 27 27 X G E -A 39 0A 12 12,-1.8 12,-2.7 -7,-0.1 2,-0.2 -0.906 47.7-111.8 178.8-151.4 -1.8 -10.0 -1.5 28 28 X G E -A 38 0A 20 10,-0.3 2,-0.3 -2,-0.3 10,-0.3 -0.745 12.1-134.7-177.0 125.5 -3.4 -6.6 -1.0 29 29 X Y - 0 0 116 8,-1.3 2,-1.1 -2,-0.2 8,-0.4 -0.647 27.0-124.2 -85.1 137.7 -4.7 -3.8 -3.1 30 30 X a - 0 0 55 -2,-0.3 4,-0.1 6,-0.3 -1,-0.1 -0.707 28.5-156.3 -85.9 100.7 -3.8 -0.3 -2.1 31 31 X N > - 0 0 34 -2,-1.1 2,-2.4 1,-0.1 3,-1.5 -0.318 35.7 -94.2 -72.2 157.0 -7.1 1.5 -1.7 32 32 X S T 3 S+ 0 0 129 1,-0.3 -1,-0.1 2,-0.1 -28,-0.1 -0.095 120.3 64.2 -70.5 45.6 -7.1 5.3 -2.1 33 33 X K T 3 S- 0 0 160 -2,-2.4 -1,-0.3 -30,-0.1 -29,-0.1 0.072 112.6-110.7-147.9 16.5 -6.8 5.8 1.7 34 34 X A S < S+ 0 0 37 -3,-1.5 -31,-0.2 -31,-0.4 -30,-0.2 0.786 86.1 123.2 52.2 31.7 -3.3 4.2 2.0 35 35 X V - 0 0 78 -4,-0.5 3,-0.3 -32,-0.1 -1,-0.1 0.730 55.4-156.5 -89.7 -25.5 -5.0 1.4 3.8 36 36 X b - 0 0 7 -5,-0.5 2,-0.6 1,-0.2 -6,-0.3 0.931 14.7-143.5 45.5 58.7 -3.7 -1.3 1.4 37 37 X V - 0 0 54 -8,-0.4 -8,-1.3 -9,-0.1 -1,-0.2 -0.355 18.8-155.0 -56.5 101.6 -6.6 -3.7 2.3 38 38 X c E -A 28 0A 28 -2,-0.6 2,-0.3 -10,-0.3 -10,-0.3 -0.314 6.8-156.7 -77.8 162.6 -4.9 -7.0 2.1 39 39 X R E A 27 0A 148 -12,-2.7 -12,-1.8 -2,-0.1 -13,-1.3 -0.997 360.0 360.0-146.3 138.2 -6.6 -10.3 1.5 40 40 X N 0 0 123 -2,-0.3 -15,-0.2 -15,-0.3 -19,-0.1 -0.441 360.0 360.0 -72.4 360.0 -5.8 -14.0 2.3