==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 24-FEB-03 1O0P . COMPND 2 MOLECULE: SPLICING FACTOR U2AF 65 KDA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.SELENKO,G.GREGOROVIC,R.SPRANGERS,G.STIER,Z.RHANI,A.KRAMER, . 117 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7058.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 58.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 372 A G 0 0 133 0, 0.0 90,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -40.7 4.2 11.6 -15.4 2 373 A H - 0 0 116 0, 0.0 2,-0.3 0, 0.0 90,-0.1 -0.769 360.0-132.4-172.5 122.0 1.4 13.7 -13.9 3 374 A P + 0 0 62 0, 0.0 65,-0.1 0, 0.0 4,-0.1 -0.608 32.8 156.3 -82.4 137.9 0.2 14.4 -10.3 4 375 A T - 0 0 30 -2,-0.3 64,-0.2 2,-0.3 90,-0.1 0.645 58.9 -87.7-120.8 -72.6 -3.5 14.1 -9.5 5 376 A E S S+ 0 0 51 88,-0.7 60,-0.7 1,-0.5 2,-0.3 0.154 97.1 68.5-177.8 -38.0 -4.3 13.4 -5.8 6 377 A V E -AB 64 93A 0 87,-1.7 87,-1.8 58,-0.2 -1,-0.5 -0.774 62.6-148.9-104.2 147.7 -4.3 9.6 -5.2 7 378 A L E -AB 63 92A 1 56,-2.5 56,-3.0 -2,-0.3 2,-0.4 -0.967 8.3-159.2-120.0 126.4 -1.2 7.3 -5.3 8 379 A C E -AB 62 91A 0 83,-1.5 83,-1.8 -2,-0.5 2,-0.4 -0.842 5.9-172.1-106.6 140.0 -1.4 3.7 -6.3 9 380 A L E +AB 61 90A 2 52,-2.6 52,-1.7 -2,-0.4 81,-0.2 -0.960 14.7 160.8-134.4 115.9 1.2 1.0 -5.4 10 381 A M E +AB 60 89A 34 79,-2.4 79,-1.4 -2,-0.4 50,-0.2 -0.642 48.7 50.2-123.8-178.7 1.2 -2.5 -6.9 11 382 A N S S+ 0 0 98 48,-0.9 72,-0.2 -2,-0.2 -1,-0.2 0.882 89.7 91.2 54.8 42.0 3.5 -5.4 -7.4 12 383 A M S S+ 0 0 1 47,-0.6 2,-0.3 -3,-0.2 48,-0.1 0.277 78.1 52.7-143.3 2.8 4.5 -5.3 -3.7 13 384 A V - 0 0 12 46,-0.6 -2,-0.1 45,-0.1 -1,-0.1 -0.913 58.2-155.3-139.6 165.7 2.0 -7.6 -2.1 14 385 A L >> - 0 0 72 -2,-0.3 3,-2.1 -3,-0.1 4,-1.9 -0.995 28.0-125.0-144.0 146.1 0.7 -11.2 -2.4 15 386 A P T 34 S+ 0 0 29 0, 0.0 37,-0.1 0, 0.0 44,-0.1 0.778 108.9 70.6 -59.9 -26.4 -2.6 -13.0 -1.5 16 387 A E T 34 S+ 0 0 157 1,-0.2 3,-0.1 2,-0.1 4,-0.0 0.620 110.3 33.4 -65.9 -11.2 -0.5 -15.5 0.5 17 388 A E T X4 S+ 0 0 46 -3,-2.1 3,-1.1 2,-0.1 -1,-0.2 0.703 111.1 59.4-111.8 -36.9 0.1 -12.6 2.9 18 389 A L T 3< S+ 0 0 0 -4,-1.9 -2,-0.1 1,-0.2 -1,-0.1 -0.053 95.2 70.7 -85.3 34.1 -3.2 -10.7 2.7 19 390 A L T 3 S+ 0 0 54 -5,-0.1 -1,-0.2 -2,-0.1 32,-0.2 0.497 83.4 76.7-122.1 -16.0 -5.0 -13.8 3.9 20 391 A D S <> S- 0 0 95 -3,-1.1 4,-1.3 1,-0.1 5,-0.3 -0.585 76.4-129.2 -96.5 161.0 -3.8 -13.9 7.5 21 392 A D H > S+ 0 0 110 -2,-0.2 4,-1.7 2,-0.2 5,-0.1 0.973 107.4 28.6 -72.6 -57.0 -5.1 -11.7 10.3 22 393 A E H > S+ 0 0 102 2,-0.2 4,-1.4 3,-0.2 -1,-0.1 0.854 122.0 54.0 -73.6 -35.9 -1.8 -10.4 11.7 23 394 A E H > S+ 0 0 62 2,-0.2 4,-1.7 1,-0.2 5,-0.2 0.961 111.9 41.7 -63.5 -54.1 -0.0 -10.7 8.3 24 395 A Y H X S+ 0 0 45 -4,-1.3 4,-1.8 1,-0.2 -2,-0.2 0.924 116.5 48.9 -60.5 -45.7 -2.6 -8.6 6.4 25 396 A E H X S+ 0 0 106 -4,-1.7 4,-1.6 -5,-0.3 -1,-0.2 0.783 104.7 63.4 -64.7 -26.5 -2.9 -6.1 9.3 26 397 A E H X S+ 0 0 2 -4,-1.4 4,-2.3 2,-0.2 3,-0.3 0.956 104.3 43.1 -62.3 -52.9 0.9 -5.9 9.3 27 398 A I H X S+ 0 0 1 -4,-1.7 4,-3.1 1,-0.2 5,-0.3 0.889 109.2 58.5 -61.3 -41.4 1.3 -4.5 5.8 28 399 A V H X S+ 0 0 27 -4,-1.8 4,-1.3 1,-0.2 -1,-0.2 0.873 109.9 44.9 -55.9 -38.4 -1.6 -2.1 6.5 29 400 A E H X S+ 0 0 73 -4,-1.6 4,-2.8 -3,-0.3 5,-0.3 0.965 115.8 43.0 -71.2 -55.3 0.4 -0.6 9.4 30 401 A D H X S+ 0 0 11 -4,-2.3 4,-1.7 1,-0.2 -2,-0.2 0.894 115.4 50.7 -58.4 -42.0 3.8 -0.4 7.7 31 402 A V H X S+ 0 0 3 -4,-3.1 4,-2.1 -5,-0.2 -1,-0.2 0.841 112.6 47.3 -65.7 -33.9 2.2 1.0 4.5 32 403 A R H X S+ 0 0 106 -4,-1.3 4,-1.9 -5,-0.3 -2,-0.2 0.935 113.2 45.5 -73.2 -48.4 0.3 3.6 6.5 33 404 A D H < S+ 0 0 60 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.783 115.3 50.8 -65.6 -27.2 3.3 4.7 8.6 34 405 A E H >< S+ 0 0 42 -4,-1.7 3,-1.4 -5,-0.3 4,-0.3 0.943 110.6 44.6 -75.6 -51.2 5.4 4.8 5.4 35 406 A C H >X S+ 0 0 5 -4,-2.1 3,-0.8 1,-0.3 4,-0.5 0.810 110.4 58.0 -63.0 -29.9 3.0 6.9 3.3 36 407 A S T 3< S+ 0 0 58 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.1 -0.002 89.3 77.7 -90.2 29.1 2.5 9.2 6.3 37 408 A K T <4 S+ 0 0 124 -3,-1.4 -1,-0.2 3,-0.1 -2,-0.2 0.617 97.0 39.5-108.1 -21.8 6.3 9.9 6.4 38 409 A Y T <4 S- 0 0 53 -3,-0.8 2,-0.2 -4,-0.3 -2,-0.2 0.603 133.8 -50.5-100.6 -18.1 6.4 12.4 3.5 39 410 A G S < S- 0 0 25 -4,-0.5 2,-0.4 31,-0.1 -1,-0.0 -0.790 85.5 -29.3-177.8-137.3 3.2 14.1 4.4 40 411 A L - 0 0 109 -2,-0.2 26,-1.2 27,-0.1 27,-0.5 -0.895 41.9-159.1-114.1 141.1 -0.4 13.4 5.3 41 412 A V E -C 65 0A 21 -2,-0.4 24,-0.3 24,-0.2 3,-0.1 -0.972 10.0-157.1-122.7 121.6 -2.5 10.4 4.1 42 413 A K E - 0 0 121 22,-1.7 2,-0.3 -2,-0.5 23,-0.2 0.951 68.7 -49.3 -57.9 -52.6 -6.3 10.5 4.1 43 414 A S E -C 64 0A 41 21,-1.4 21,-2.6 2,-0.0 2,-0.3 -0.972 48.1-123.6-170.8 178.1 -6.7 6.7 4.1 44 415 A I E -C 63 0A 17 -2,-0.3 2,-0.5 19,-0.2 19,-0.2 -0.998 9.3-155.6-142.1 144.4 -5.6 3.4 2.6 45 416 A E E +C 62 0A 53 17,-2.0 17,-1.7 -2,-0.3 -2,-0.0 -0.981 13.5 179.9-124.9 123.8 -7.4 0.5 1.0 46 417 A I - 0 0 6 -2,-0.5 15,-0.1 15,-0.2 12,-0.0 -0.978 29.7-114.1-125.4 133.7 -5.9 -3.0 0.9 47 418 A P - 0 0 1 0, 0.0 8,-0.0 0, 0.0 14,-0.0 -0.283 25.3-172.0 -63.1 147.7 -7.5 -6.2 -0.6 48 419 A R - 0 0 88 -29,-0.1 2,-0.1 2,-0.0 -29,-0.1 -0.561 10.1-156.2-143.9 74.4 -8.4 -9.0 1.7 49 420 A P > - 0 0 0 0, 0.0 2,-1.2 0, 0.0 3,-0.6 -0.320 22.6-125.7 -55.3 118.6 -9.5 -12.2 -0.1 50 421 A V T 3 S- 0 0 80 1,-0.3 5,-0.1 2,-0.2 -31,-0.1 -0.551 84.9 -34.3 -71.8 98.7 -11.7 -14.3 2.2 51 422 A D T 3 S- 0 0 153 -2,-1.2 -1,-0.3 1,-0.2 -32,-0.1 0.757 135.0 -35.3 57.7 22.9 -10.0 -17.6 2.1 52 423 A G S < S+ 0 0 36 -3,-0.6 3,-0.3 -37,-0.1 -1,-0.2 0.746 104.9 134.1 99.0 33.6 -9.2 -16.7 -1.4 53 424 A V S S+ 0 0 92 1,-0.2 -2,-0.1 2,-0.1 0, 0.0 0.815 81.5 26.6 -82.1 -33.2 -12.5 -14.8 -2.1 54 425 A E S S+ 0 0 75 1,-0.1 4,-0.5 -39,-0.1 -1,-0.2 -0.122 80.8 120.3-122.9 35.9 -10.9 -11.8 -3.8 55 426 A V > + 0 0 57 -3,-0.3 3,-1.6 2,-0.1 2,-0.8 0.895 45.0 100.4 -65.3 -42.7 -7.7 -13.3 -5.1 56 427 A P T 3 S- 0 0 109 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.252 111.7 -7.8 -47.6 92.1 -8.6 -12.4 -8.8 57 428 A G T 3 S+ 0 0 38 -2,-0.8 -2,-0.1 1,-0.3 -3,-0.0 0.081 98.1 150.1 103.1 -23.3 -6.4 -9.3 -9.1 58 429 A C < + 0 0 17 -3,-1.6 -1,-0.3 -4,-0.5 3,-0.1 -0.036 41.2 70.8 -43.1 142.1 -5.5 -9.2 -5.4 59 430 A G + 0 0 10 1,-0.2 -48,-0.9 -45,-0.2 -47,-0.6 0.565 69.4 106.7 118.5 19.2 -2.0 -7.7 -4.8 60 431 A K E -A 10 0A 70 -50,-0.2 2,-0.3 -49,-0.1 -50,-0.2 -0.939 42.5-177.7-133.3 110.8 -2.7 -4.0 -5.5 61 432 A I E -A 9 0A 0 -52,-1.7 -52,-2.6 -2,-0.4 2,-0.3 -0.774 4.4-165.7-106.9 151.6 -2.9 -1.5 -2.7 62 433 A F E -AC 8 45A 4 -17,-1.7 -17,-2.0 -2,-0.3 2,-0.4 -0.953 8.2-147.6-136.3 157.2 -3.7 2.2 -3.0 63 434 A V E -AC 7 44A 0 -56,-3.0 -56,-2.5 -2,-0.3 2,-0.8 -0.986 11.7-139.4-130.1 129.0 -3.4 5.3 -0.8 64 435 A E E -AC 6 43A 14 -21,-2.6 -22,-1.7 -2,-0.4 -21,-1.4 -0.769 29.2-163.2 -88.1 110.5 -5.6 8.4 -0.7 65 436 A F E - C 0 41A 0 -2,-0.8 -24,-0.2 -60,-0.7 3,-0.1 -0.295 21.3-149.3 -88.2 174.0 -3.3 11.4 -0.3 66 437 A T S S+ 0 0 52 -26,-1.2 2,-0.4 1,-0.3 -25,-0.1 0.705 82.4 30.8-111.4 -37.1 -4.2 14.9 0.8 67 438 A S > - 0 0 55 -27,-0.5 4,-1.4 1,-0.1 -1,-0.3 -0.992 61.9-146.1-131.4 130.6 -1.6 17.0 -1.1 68 439 A V H > S+ 0 0 50 -2,-0.4 4,-2.2 1,-0.2 5,-0.1 0.731 98.3 67.0 -63.1 -21.8 -0.0 16.2 -4.4 69 440 A F H > S+ 0 0 154 2,-0.2 4,-1.9 1,-0.2 3,-0.2 0.980 106.4 35.7 -63.5 -58.8 3.2 17.8 -3.1 70 441 A D H > S+ 0 0 41 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.733 114.3 62.3 -67.0 -21.4 3.9 15.2 -0.5 71 442 A C H X S+ 0 0 0 -4,-1.4 4,-1.8 2,-0.2 5,-0.3 0.909 103.7 46.7 -68.8 -43.0 2.5 12.7 -3.0 72 443 A Q H X S+ 0 0 66 -4,-2.2 4,-1.5 -3,-0.2 -2,-0.2 0.944 114.8 45.5 -62.5 -49.9 5.3 13.5 -5.5 73 444 A K H < S+ 0 0 108 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.681 108.1 63.6 -67.7 -18.3 8.0 13.3 -2.8 74 445 A A H >X S+ 0 0 0 -4,-0.9 3,-1.5 -5,-0.2 4,-1.1 0.991 109.0 33.0 -69.8 -63.5 6.3 10.1 -1.6 75 446 A M H 3X S+ 0 0 31 -4,-1.8 4,-1.3 1,-0.3 -2,-0.2 0.742 102.5 80.8 -65.9 -22.3 6.8 7.9 -4.7 76 447 A Q H 3< S+ 0 0 163 -4,-1.5 -1,-0.3 -5,-0.3 -2,-0.2 0.537 109.9 23.9 -62.3 -3.6 10.1 9.7 -5.3 77 448 A G H <4 S+ 0 0 28 -3,-1.5 -1,-0.2 -4,-0.0 -2,-0.2 0.534 123.9 48.5-133.9 -21.6 11.5 7.4 -2.7 78 449 A L H < S+ 0 0 2 -4,-1.1 3,-0.4 3,-0.1 2,-0.4 0.227 85.5 108.6-107.0 12.0 9.3 4.3 -2.7 79 450 A T S < S- 0 0 66 -4,-1.3 10,-0.2 1,-0.2 3,-0.0 -0.758 90.9 -0.3 -93.4 134.4 9.2 3.8 -6.5 80 451 A G S S+ 0 0 19 8,-2.4 -1,-0.2 -2,-0.4 9,-0.1 0.594 105.5 122.9 67.5 9.0 11.1 0.9 -8.0 81 452 A R - 0 0 54 -3,-0.4 7,-0.4 7,-0.3 2,-0.2 0.432 67.0-101.8 -75.5-141.5 12.2 -0.1 -4.4 82 453 A K - 0 0 80 5,-0.2 34,-0.9 1,-0.1 5,-0.2 -0.746 19.0-168.4-157.5 103.8 11.5 -3.4 -2.8 83 454 A F S S- 0 0 2 3,-0.8 30,-0.2 31,-0.3 4,-0.1 0.732 93.7 -32.9 -62.6 -21.7 8.7 -4.1 -0.3 84 455 A A S S- 0 0 57 2,-0.4 -1,-0.1 30,-0.1 3,-0.1 0.227 126.7 -26.4-162.6 -52.1 10.4 -7.5 0.3 85 456 A N S S+ 0 0 113 1,-0.2 2,-0.3 -4,-0.0 -3,-0.1 0.222 114.0 75.1-163.6 13.7 12.1 -8.9 -2.8 86 457 A R S S- 0 0 45 -74,-0.1 -3,-0.8 -75,-0.0 -2,-0.4 -0.960 81.4 -99.1-135.6 153.2 10.2 -7.4 -5.7 87 458 A V - 0 0 76 -2,-0.3 2,-0.6 -5,-0.2 -5,-0.2 -0.435 33.7-133.4 -71.8 142.6 10.1 -4.0 -7.5 88 459 A V - 0 0 2 -7,-0.4 -8,-2.4 -2,-0.1 2,-0.6 -0.871 11.3-149.8-102.7 120.3 7.1 -1.8 -6.6 89 460 A V E -B 10 0A 69 -79,-1.4 -79,-2.4 -2,-0.6 2,-0.5 -0.787 13.2-165.5 -91.8 117.3 5.3 -0.1 -9.5 90 461 A T E +B 9 0A 22 -2,-0.6 2,-0.4 -81,-0.2 -81,-0.2 -0.896 9.9 175.8-107.5 126.9 3.8 3.3 -8.5 91 462 A K E -B 8 0A 98 -83,-1.8 -83,-1.5 -2,-0.5 2,-0.2 -0.985 35.6-114.4-133.3 123.2 1.2 4.9 -10.7 92 463 A Y E -B 7 0A 38 -2,-0.4 2,-0.3 -85,-0.2 -85,-0.2 -0.339 36.2-154.1 -56.7 119.2 -0.6 8.2 -9.9 93 464 A C E -B 6 0A 15 -87,-1.8 -87,-1.7 -30,-0.2 -88,-0.7 -0.741 9.4-125.1-100.0 147.2 -4.3 7.3 -9.4 94 465 A D > - 0 0 71 -2,-0.3 4,-2.1 -89,-0.2 5,-0.2 -0.708 16.1-126.9 -92.0 139.7 -7.2 9.8 -9.9 95 466 A P H > S+ 0 0 40 0, 0.0 4,-1.6 0, 0.0 5,-0.2 0.680 103.8 69.7 -55.8 -17.0 -9.8 10.4 -7.1 96 467 A D H > S+ 0 0 133 2,-0.2 4,-1.4 1,-0.2 3,-0.2 0.997 109.3 23.5 -64.6 -77.5 -12.4 9.5 -9.7 97 468 A S H >>S+ 0 0 45 1,-0.2 4,-1.1 2,-0.2 5,-0.8 0.811 117.7 67.8 -60.7 -31.1 -11.9 5.8 -10.3 98 469 A Y H ><5S+ 0 0 28 -4,-2.1 3,-1.7 1,-0.2 -1,-0.2 0.969 104.9 39.5 -52.0 -59.6 -10.3 5.5 -6.9 99 470 A H H 3<5S+ 0 0 140 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.808 107.1 67.4 -59.8 -29.8 -13.6 6.3 -5.1 100 471 A R H 3<5S- 0 0 187 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.765 94.8-148.8 -61.3 -25.4 -15.2 4.2 -7.8 101 472 A R T <<5 + 0 0 137 -3,-1.7 -3,-0.2 -4,-1.1 -2,-0.1 0.941 29.6 169.7 53.1 53.0 -13.4 1.2 -6.1 102 473 A D S