==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 27-NOV-06 2O00 . COMPND 2 MOLECULE: PENETRATIN CONJUGATED GAS (374-394) PEPTIDE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.M.D'URSI,P.ROVERO,S.ALBRIZIO,C.ESPSITO,G.D'ERRICO, . 37 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4786.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 273 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -99.5 12.1 -14.9 -14.6 2 2 A Q > + 0 0 141 1,-0.2 3,-0.6 2,-0.1 0, 0.0 0.871 360.0 148.3 38.0 52.8 15.4 -14.1 -13.0 3 3 A I T 3 + 0 0 101 1,-0.2 -1,-0.2 2,-0.0 3,-0.2 0.378 57.3 74.0 -92.9 1.5 13.8 -14.9 -9.6 4 4 A K T 3 S+ 0 0 152 1,-0.2 3,-0.4 2,-0.1 2,-0.3 0.293 70.8 90.3 -94.8 7.2 17.1 -16.0 -8.4 5 5 A I X + 0 0 51 -3,-0.6 3,-1.1 1,-0.2 -1,-0.2 -0.284 40.8 141.7 -97.3 45.6 18.2 -12.4 -8.1 6 6 A W G > + 0 0 183 1,-0.3 3,-0.9 -2,-0.3 2,-0.5 0.825 69.4 63.0 -54.5 -31.7 17.0 -12.1 -4.6 7 7 A F G 3 S+ 0 0 185 -3,-0.4 -1,-0.3 1,-0.3 3,-0.1 -0.166 115.8 27.8 -87.4 40.3 20.1 -10.0 -4.1 8 8 A Q G < S+ 0 0 145 -3,-1.1 -1,-0.3 -2,-0.5 -2,-0.2 0.181 87.9 105.6 171.3 40.3 18.8 -7.5 -6.6 9 9 A N < + 0 0 82 -3,-0.9 -3,-0.0 1,-0.1 -6,-0.0 -0.601 46.6 94.4-134.4 71.4 15.0 -7.6 -6.5 10 10 A R > + 0 0 158 -2,-0.2 3,-2.0 -3,-0.1 5,-0.2 0.573 68.1 69.9-127.3 -33.9 13.8 -4.5 -4.7 11 11 A R T 3 S+ 0 0 166 1,-0.3 3,-0.5 2,-0.1 -2,-0.1 0.620 83.8 78.8 -63.4 -11.9 13.1 -2.0 -7.4 12 12 A M T 3 S- 0 0 143 1,-0.3 -1,-0.3 5,-0.0 -2,-0.0 0.451 120.4 -0.1 -75.6 -0.3 10.2 -4.3 -8.3 13 13 A K < - 0 0 79 -3,-2.0 2,-2.3 2,-0.1 -1,-0.3 -0.094 64.6-179.3 173.0 72.5 8.4 -2.6 -5.4 14 14 A W S S- 0 0 158 -3,-0.5 -3,-0.1 1,-0.2 -4,-0.0 -0.329 75.7 -70.5 -80.0 55.4 10.3 0.0 -3.5 15 15 A K S S+ 0 0 145 -2,-2.3 -1,-0.2 -5,-0.2 -2,-0.1 0.898 116.1 86.6 54.2 103.9 7.3 0.4 -1.2 16 16 A K S S+ 0 0 155 -3,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.060 92.9 37.5 166.9 -31.0 4.5 2.1 -3.2 17 17 A R S >> S+ 0 0 155 2,-0.1 4,-1.3 3,-0.1 3,-1.2 0.568 98.2 77.1-113.3 -20.6 2.7 -0.8 -4.9 18 18 A V H 3> S+ 0 0 55 1,-0.3 4,-2.2 2,-0.2 5,-0.4 0.948 88.6 58.4 -54.8 -53.6 3.0 -3.3 -2.1 19 19 A F H 34 S+ 0 0 102 1,-0.2 4,-0.3 2,-0.2 -1,-0.3 0.713 101.4 61.6 -49.5 -21.4 0.2 -1.6 -0.2 20 20 A N H X4 S+ 0 0 77 -3,-1.2 3,-0.8 2,-0.2 -1,-0.2 0.977 105.2 41.3 -69.9 -58.7 -1.8 -2.4 -3.3 21 21 A D H 3X S+ 0 0 47 -4,-1.3 4,-0.5 -3,-0.4 6,-0.4 0.950 116.0 49.5 -53.0 -55.3 -1.5 -6.1 -3.2 22 22 A A T 3< S+ 0 0 65 -4,-2.2 2,-0.9 1,-0.3 -1,-0.3 0.694 99.9 74.0 -57.9 -17.8 -2.1 -6.1 0.6 23 23 A R T <4 S+ 0 0 199 -3,-0.8 -1,-0.3 -5,-0.4 -2,-0.1 -0.423 90.7 56.1 -94.9 57.1 -5.0 -3.9 -0.4 24 24 A D T 4 S- 0 0 68 -2,-0.9 -2,-0.1 -3,-0.2 -1,-0.1 0.335 116.6 -71.9-143.1 -72.4 -7.1 -6.8 -1.7 25 25 A I S < S+ 0 0 103 -4,-0.5 -3,-0.1 6,-0.0 -4,-0.0 0.152 114.2 5.0-161.8 -61.2 -7.7 -9.7 0.6 26 26 A I S > S- 0 0 71 -5,-0.1 4,-0.7 -3,-0.0 3,-0.5 -0.313 112.7 -80.6-136.1 49.1 -4.7 -11.8 1.2 27 27 A Q T 4 S- 0 0 102 -6,-0.4 -5,-0.2 1,-0.2 -4,-0.1 0.576 85.7 -70.7 63.2 7.8 -2.0 -9.9 -0.6 28 28 A R T 4 S+ 0 0 122 -7,-0.2 -1,-0.2 -6,-0.1 -6,-0.1 0.968 122.3 89.7 72.7 57.0 -3.4 -11.6 -3.7 29 29 A M T 4 S+ 0 0 138 -3,-0.5 -2,-0.1 0, 0.0 0, 0.0 0.443 83.7 42.2-145.0 -43.4 -2.2 -15.1 -2.9 30 30 A H S < S+ 0 0 136 -4,-0.7 -3,-0.1 2,-0.0 0, 0.0 0.252 92.4 115.2 -95.4 9.9 -4.9 -16.9 -0.8 31 31 A L - 0 0 69 -5,-0.2 -7,-0.0 1,-0.1 -6,-0.0 0.368 40.7-178.7 -58.6-157.5 -7.6 -15.4 -3.0 32 32 A R - 0 0 206 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.125 14.2-157.7-174.9 -44.1 -9.7 -17.6 -5.2 33 33 A Q - 0 0 153 1,-0.2 2,-0.3 3,-0.0 4,-0.1 0.938 9.8-173.1 42.4 73.6 -12.1 -15.5 -7.2 34 34 A Y + 0 0 178 2,-0.1 -1,-0.2 3,-0.0 0, 0.0 -0.147 31.3 145.0 -87.7 39.0 -14.7 -18.2 -7.8 35 35 A E S S- 0 0 133 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 0.354 78.6 -43.2 -57.3-160.2 -16.6 -15.8 -10.1 36 36 A L 0 0 130 1,-0.2 -1,-0.1 0, 0.0 -2,-0.1 0.771 360.0 360.0 -40.5 -29.1 -18.4 -17.0 -13.2 37 37 A L 0 0 160 -4,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.085 360.0 360.0 39.5 360.0 -15.2 -19.1 -13.6