==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 26-JUL-10 3O3Z . COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; . SOURCE 2 SYNTHETIC: YES; . AUTHOR W.S.HORNE,L.M.JOHNSON,S.H.GELLMAN . 68 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5738.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 89.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 85.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S > 0 0 130 0, 0.0 4,-0.6 0, 0.0 66,-0.0 0.000 360.0 360.0 360.0 -17.0 36.0 28.5 23.9 2 2 A G H > + 0 0 51 2,-0.2 4,-1.2 3,-0.1 5,-0.1 0.847 360.0 54.3 -84.4 -38.7 34.9 24.8 24.3 3 3 A I H > S+ 0 0 81 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.891 113.8 43.4 -65.2 -39.9 31.3 25.5 25.5 4 4 A V H > S+ 0 0 27 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.734 108.5 57.2 -74.0 -27.8 30.7 27.7 22.4 5 5 A Q H X S+ 0 0 102 -4,-0.6 4,-1.1 1,-0.2 -1,-0.2 0.729 109.8 48.2 -75.1 -21.4 32.4 25.2 20.1 6 6 A Q H X S+ 0 0 107 -4,-1.2 4,-2.1 2,-0.2 -2,-0.2 0.709 99.9 61.3 -92.1 -20.4 29.9 22.7 21.4 7 7 A Q H X S+ 0 0 100 -4,-1.0 4,-2.5 2,-0.2 -2,-0.2 0.927 109.7 46.9 -58.4 -43.5 26.9 25.0 20.9 8 8 A N H X S+ 0 0 40 -4,-1.4 4,-2.8 2,-0.2 -2,-0.2 0.873 108.0 53.9 -62.8 -42.2 28.1 24.8 17.3 9 9 A N H X S+ 0 0 77 -4,-1.1 4,-1.6 2,-0.2 -1,-0.2 0.924 113.1 43.3 -58.5 -48.2 28.4 21.0 17.4 10 10 A L H X S+ 0 0 88 -4,-2.1 4,-2.5 2,-0.2 5,-0.2 0.888 111.7 54.2 -62.9 -42.5 24.8 20.7 18.7 11 11 A L H X S+ 0 0 15 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.934 107.9 50.8 -61.7 -41.4 23.7 23.2 16.2 12 12 A R H X S+ 0 0 158 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.853 110.8 47.6 -63.2 -38.0 25.2 21.2 13.4 13 13 A A H X S+ 0 0 49 -4,-1.6 4,-2.6 2,-0.2 -1,-0.2 0.900 111.5 50.5 -67.3 -43.0 23.5 17.9 14.5 14 14 A I H X S+ 0 0 83 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.916 110.9 49.3 -61.7 -43.4 20.1 19.6 14.9 15 15 A E H X S+ 0 0 62 -4,-2.1 4,-1.7 -5,-0.2 -1,-0.2 0.869 111.6 48.2 -66.0 -39.8 20.5 21.0 11.4 16 16 A A H X S+ 0 0 56 -4,-1.7 4,-2.5 2,-0.2 -2,-0.2 0.911 110.4 52.2 -67.3 -41.3 21.4 17.6 9.9 17 17 A Q H X S+ 0 0 130 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.886 106.2 55.0 -62.2 -36.7 18.5 16.0 11.8 18 18 A Q H X S+ 0 0 15 -4,-2.2 4,-2.4 2,-0.2 -1,-0.2 0.945 110.0 44.9 -60.0 -47.5 16.2 18.6 10.2 19 19 A H H X S+ 0 0 105 -4,-1.7 4,-1.8 1,-0.2 -2,-0.2 0.899 112.7 51.5 -64.5 -41.4 17.4 17.7 6.7 20 20 A L H X S+ 0 0 107 -4,-2.5 4,-1.3 2,-0.2 -1,-0.2 0.858 108.9 51.4 -62.4 -40.1 17.1 14.0 7.5 21 21 A L H >X S+ 0 0 92 -4,-2.4 4,-3.0 2,-0.2 3,-0.6 0.958 106.1 54.5 -56.8 -55.4 13.5 14.6 8.8 22 22 A Q H 3X S+ 0 0 61 -4,-2.4 4,-2.0 1,-0.3 -2,-0.2 0.886 107.7 49.8 -48.4 -41.6 12.6 16.4 5.5 23 23 A L H 3X S+ 0 0 108 -4,-1.8 4,-1.6 2,-0.2 -1,-0.3 0.833 112.1 49.7 -68.1 -29.3 13.9 13.3 3.6 24 24 A T H < S+ 0 0 100 -4,-1.9 3,-1.2 2,-0.2 -2,-0.2 0.936 113.2 44.1 -62.0 -52.4 5.9 9.3 3.5 29 29 A K H >< S+ 0 0 57 -4,-2.4 3,-0.8 1,-0.2 -1,-0.2 0.845 109.0 60.2 -62.1 -31.5 4.4 11.7 1.0 30 30 A Q H 3< S+ 0 0 117 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.655 102.9 53.8 -68.5 -16.5 6.1 9.6 -1.8 31 31 A L T << 0 0 144 -3,-1.2 -1,-0.3 -4,-0.6 -2,-0.1 -0.406 360.0 360.0-112.5 53.2 4.0 6.7 -0.5 32 32 A Q < 0 0 184 -3,-0.8 -2,-0.1 -2,-0.0 -3,-0.1 0.079 360.0 360.0-148.2 360.0 0.6 8.4 -0.8 33 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 34 3 B W > 0 0 106 0, 0.0 4,-2.9 0, 0.0 5,-0.3 0.000 360.0 360.0 360.0-110.0 -4.3 16.9 2.2 35 4 B E T 4 + 0 0 81 2,-0.2 0, 0.0 3,-0.2 0, 0.0 0.294 360.0 60.0 -73.0 14.2 -2.0 19.3 0.2 36 5 B X T > S+ 0 0 115 2,-0.1 4,-2.7 3,-0.1 5,-0.2 0.726 116.0 33.5 -80.3 -80.4 -3.8 21.9 3.8 37 6 B W H > S+ 0 0 56 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.965 113.5 50.4 -57.6 -53.9 -2.1 19.5 6.3 38 7 B D H X S+ 0 0 64 -4,-2.9 4,-2.8 2,-0.2 3,-0.2 0.947 114.4 53.1 -56.2 -58.8 0.9 18.7 4.2 39 8 B X H > S+ 0 0 71 -5,-0.3 4,-2.5 2,-0.2 -2,-0.2 0.930 112.7 46.8 -5.1 -83.5 0.9 23.3 4.1 40 9 B A H X S+ 0 0 68 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.831 117.1 40.0 -46.8 -43.3 0.8 23.2 7.9 41 10 B I H X S+ 0 0 93 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.947 115.4 44.9 -82.7 -47.7 3.5 20.6 8.3 42 11 B A H X S+ 0 0 51 -4,-2.8 4,-2.2 -5,-0.3 -2,-0.2 0.897 114.6 58.7 -68.9 -40.3 6.0 21.7 5.7 43 12 B X H X S+ 0 0 148 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.896 112.5 43.3 -15.1 -69.3 4.9 25.8 7.7 44 13 B Y H X S+ 0 0 160 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.908 105.3 50.6 -64.2 -45.3 6.2 24.1 10.9 45 14 B A H X S+ 0 0 20 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.950 113.2 53.6 -64.7 -48.2 9.3 22.5 9.3 46 15 B X H X S+ 0 0 54 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.942 111.7 50.6 -17.8 -69.0 9.7 27.0 7.8 47 16 B R H X S+ 0 0 140 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.912 111.4 41.4 -54.6 -47.2 9.4 27.7 11.6 48 17 B I H X S+ 0 0 44 -4,-2.5 4,-2.6 2,-0.2 5,-0.3 0.932 108.5 53.2 -71.3 -42.4 12.1 25.2 12.6 49 18 B E H X S+ 0 0 75 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.884 112.2 54.9 -61.8 -36.3 14.4 26.1 9.7 50 19 B X H X S+ 0 0 84 -4,-2.4 4,-2.4 2,-0.2 -2,-0.2 0.873 112.8 45.7 -29.5 -61.6 13.5 30.3 11.8 51 20 B L H X S+ 0 0 83 -4,-2.3 4,-1.7 2,-0.2 -2,-0.2 0.923 107.9 46.0 -64.9 -44.7 14.7 28.6 15.0 52 21 B I H X S+ 0 0 12 -4,-2.6 4,-2.0 2,-0.2 -2,-0.2 0.949 113.0 57.8 -74.7 -51.0 17.8 27.1 13.3 53 22 B X H X S+ 0 0 48 -4,-2.5 4,-2.4 -5,-0.3 3,-0.3 0.958 110.8 46.0 -8.0 -85.6 18.2 31.3 11.7 54 23 B A H X S+ 0 0 50 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.817 112.3 46.5 -40.9 -49.8 18.2 32.4 15.3 55 24 B A H X S+ 0 0 40 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.866 112.2 50.0 -74.0 -36.5 20.7 29.8 16.5 56 25 B Q H X S+ 0 0 68 -4,-2.0 4,-1.8 -3,-0.3 -1,-0.2 0.873 112.9 48.2 -65.1 -38.0 23.1 30.4 13.6 57 26 B E H X S+ 0 0 129 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.897 112.8 46.7 -71.3 -42.6 23.0 34.2 14.3 58 27 B Q H X S+ 0 0 108 -4,-2.5 4,-2.3 -5,-0.2 -2,-0.2 0.845 108.3 56.6 -66.5 -33.3 23.5 33.7 18.0 59 28 B Q H X S+ 0 0 14 -4,-2.1 4,-1.7 2,-0.2 -2,-0.2 0.957 110.7 44.3 -64.9 -44.7 26.4 31.3 17.3 60 29 B E H X S+ 0 0 134 -4,-1.8 4,-2.0 2,-0.2 5,-0.3 0.946 113.3 48.8 -62.4 -50.5 28.1 34.0 15.2 61 30 B K H X S+ 0 0 53 -4,-2.5 4,-2.9 1,-0.2 -1,-0.2 0.910 112.6 51.1 -52.8 -42.1 27.4 36.8 17.7 62 31 B N H X S+ 0 0 50 -4,-2.3 4,-1.7 2,-0.2 -1,-0.2 0.820 107.4 50.6 -70.4 -37.3 28.8 34.6 20.5 63 32 B E H X S+ 0 0 79 -4,-1.7 4,-2.3 -3,-0.2 3,-0.4 0.986 115.3 42.1 -61.4 -57.4 32.0 33.7 18.8 64 33 B A H X S+ 0 0 37 -4,-2.0 4,-1.4 1,-0.3 3,-0.2 0.936 115.3 50.2 -54.3 -52.4 32.8 37.3 18.0 65 34 B A H X S+ 0 0 62 -4,-2.9 4,-1.2 -5,-0.3 -1,-0.3 0.818 110.8 49.4 -59.2 -32.5 31.8 38.4 21.4 66 35 B L H < S+ 0 0 74 -4,-1.7 -1,-0.2 -3,-0.4 -2,-0.2 0.833 105.8 56.7 -78.2 -34.2 33.9 35.7 23.2 67 36 B R H < S+ 0 0 201 -4,-2.3 -1,-0.2 -3,-0.2 -2,-0.2 0.805 106.5 52.1 -62.5 -32.3 37.0 36.6 21.1 68 37 B E H < 0 0 110 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.854 360.0 360.0 -76.4 -37.2 36.7 40.1 22.4 69 38 B L < 0 0 185 -4,-1.2 0, 0.0 0, 0.0 0, 0.0 -0.371 360.0 360.0 -55.0 360.0 36.5 39.3 26.2