==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 04-DEC-06 2O49 . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.YAMASAKI,T.AKIBA,K.HARATA . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5423.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 73.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 61.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 370 A E 0 0 182 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -26.7 -1.8 21.2 28.6 2 371 A V - 0 0 13 44,-0.1 2,-0.1 59,-0.0 56,-0.1 -0.922 360.0-122.4-108.2 124.2 0.7 19.4 26.4 3 372 A S > - 0 0 32 -2,-0.5 3,-2.1 1,-0.1 4,-0.2 -0.372 10.6-131.0 -67.7 137.7 3.7 17.8 28.1 4 373 A S T 3 S+ 0 0 73 1,-0.3 3,-0.3 2,-0.1 4,-0.2 0.605 107.9 59.2 -62.4 -11.2 7.2 18.8 26.9 5 374 A E T 3> + 0 0 108 1,-0.2 4,-2.4 2,-0.1 -1,-0.3 0.235 68.3 109.8-102.5 13.0 8.0 15.0 26.7 6 375 A I H <> S+ 0 0 0 -3,-2.1 4,-2.5 1,-0.2 5,-0.2 0.896 77.2 53.1 -55.1 -42.2 5.3 14.2 24.2 7 376 A Y H > S+ 0 0 14 -3,-0.3 4,-2.2 1,-0.2 -1,-0.2 0.899 110.4 46.7 -61.3 -41.2 7.9 13.6 21.5 8 377 A Q H > S+ 0 0 92 -3,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.867 111.5 52.4 -68.1 -36.7 9.8 11.1 23.7 9 378 A W H X S+ 0 0 102 -4,-2.4 4,-1.9 2,-0.2 -2,-0.2 0.888 110.0 47.7 -66.7 -39.9 6.5 9.4 24.6 10 379 A V H X S+ 0 0 1 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.934 111.7 49.6 -67.4 -45.6 5.5 9.0 21.0 11 380 A R H X S+ 0 0 107 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.914 112.4 47.6 -60.0 -43.2 8.9 7.6 20.0 12 381 A D H X S+ 0 0 82 -4,-2.2 4,-3.1 2,-0.2 -1,-0.2 0.882 111.7 51.4 -65.5 -37.7 8.8 5.1 22.9 13 382 A E H X S+ 0 0 10 -4,-1.9 4,-2.9 2,-0.2 5,-0.4 0.951 107.2 51.4 -64.6 -48.7 5.3 4.1 22.0 14 383 A L H X>S+ 0 0 24 -4,-2.7 5,-1.4 1,-0.2 4,-1.2 0.914 116.3 41.8 -53.7 -45.7 6.1 3.4 18.3 15 384 A K H <5S+ 0 0 181 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.943 114.4 51.7 -67.8 -48.5 9.0 1.2 19.4 16 385 A R H <5S+ 0 0 87 -4,-3.1 -2,-0.2 1,-0.2 -3,-0.2 0.961 120.3 32.7 -51.0 -60.5 7.0 -0.5 22.2 17 386 A A H <5S- 0 0 19 -4,-2.9 -1,-0.2 -5,-0.1 -2,-0.2 0.613 101.6-132.4 -74.6 -14.6 4.1 -1.4 20.0 18 387 A G T <5 + 0 0 50 -4,-1.2 2,-0.3 -5,-0.4 -3,-0.2 0.921 54.5 147.2 62.7 43.6 6.2 -1.9 16.9 19 388 A I < - 0 0 18 -5,-1.4 -1,-0.2 -6,-0.2 2,-0.1 -0.743 48.1-107.7-114.1 162.0 3.9 0.1 14.7 20 389 A S > - 0 0 59 -2,-0.3 4,-2.0 1,-0.1 5,-0.2 -0.358 26.7-117.2 -79.8 162.4 4.3 2.4 11.7 21 390 A Q H > S+ 0 0 61 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.853 114.3 61.4 -66.3 -33.7 4.0 6.2 11.8 22 391 A A H > S+ 0 0 37 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.925 106.9 42.7 -58.4 -49.0 1.1 5.8 9.4 23 392 A V H > S+ 0 0 3 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.962 117.5 45.3 -63.9 -53.3 -1.0 3.7 11.8 24 393 A F H X>S+ 0 0 0 -4,-2.0 4,-2.5 1,-0.2 5,-0.5 0.888 112.0 51.6 -59.7 -40.5 -0.1 5.9 14.8 25 394 A A H X5S+ 0 0 0 -4,-3.0 6,-2.0 -5,-0.2 4,-1.3 0.905 113.4 46.5 -63.8 -39.1 -0.8 9.1 13.0 26 395 A R H X5S+ 0 0 91 -4,-1.9 4,-1.5 4,-0.3 -2,-0.2 0.984 121.5 32.4 -67.0 -58.0 -4.1 7.8 11.9 27 396 A V H <5S+ 0 0 35 -4,-2.6 -2,-0.2 2,-0.2 -3,-0.2 0.830 122.3 46.2 -71.1 -34.7 -5.5 6.5 15.2 28 397 A A H <5S- 0 0 8 -4,-2.5 35,-0.3 -5,-0.3 -3,-0.2 0.894 138.2 -5.3 -78.4 -43.3 -3.8 8.9 17.6 29 398 A F H <> - 0 0 86 -2,-0.2 4,-1.4 -3,-0.1 3,-0.5 -0.557 34.7-102.0-102.2 167.6 -1.0 11.0 7.7 33 402 A Q H 3> S+ 0 0 94 1,-0.2 4,-2.5 2,-0.2 3,-0.3 0.883 115.3 53.3 -49.5 -53.8 2.5 9.5 8.0 34 403 A G H 3> S+ 0 0 36 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.834 105.9 54.6 -55.4 -37.6 4.4 12.4 6.5 35 404 A L H <> S+ 0 0 67 -3,-0.5 4,-2.2 2,-0.2 -1,-0.2 0.902 110.8 44.9 -64.3 -42.3 2.9 14.9 8.9 36 405 A L H X S+ 0 0 0 -4,-1.4 4,-2.8 -3,-0.3 5,-0.2 0.895 109.7 55.9 -69.8 -39.0 4.0 12.8 11.9 37 406 A S H X S+ 0 0 42 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.942 112.3 42.7 -57.3 -47.6 7.5 12.3 10.4 38 407 A E H X S+ 0 0 76 -4,-2.3 4,-2.4 2,-0.2 5,-0.2 0.887 111.8 53.7 -66.1 -40.7 7.9 16.1 10.2 39 408 A I H X S+ 0 0 17 -4,-2.2 4,-1.8 1,-0.2 5,-0.5 0.918 112.2 45.2 -60.2 -42.8 6.4 16.7 13.6 40 409 A L H < S+ 0 0 7 -4,-2.8 -1,-0.2 2,-0.2 -2,-0.2 0.808 111.1 53.4 -71.0 -32.0 8.9 14.2 15.1 41 410 A R H < S+ 0 0 153 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.925 114.0 40.5 -69.4 -44.1 11.8 15.7 13.2 42 411 A K H < S- 0 0 112 -4,-2.4 -2,-0.2 -5,-0.1 3,-0.2 0.830 81.6-164.2 -74.3 -33.1 11.2 19.3 14.3 43 412 A E < - 0 0 103 -4,-1.8 2,-0.4 -5,-0.2 -3,-0.1 0.933 17.1-159.3 44.1 56.4 10.3 18.4 17.9 44 413 A E - 0 0 89 -5,-0.5 -1,-0.2 1,-0.1 5,-0.1 -0.531 23.3-107.3 -70.7 122.9 8.8 21.8 18.4 45 414 A D >> - 0 0 77 -2,-0.4 3,-2.4 -3,-0.2 4,-0.5 -0.269 21.2-135.9 -51.6 123.0 8.7 22.8 22.1 46 415 A P G >4 S+ 0 0 9 0, 0.0 3,-0.7 0, 0.0 -1,-0.2 0.785 101.6 70.3 -52.7 -28.5 5.0 22.6 23.1 47 416 A K G 34 S+ 0 0 137 1,-0.2 -2,-0.1 -43,-0.0 -3,-0.0 0.754 113.4 25.5 -61.8 -26.2 5.5 25.9 24.9 48 417 A T G <4 S+ 0 0 105 -3,-2.4 -1,-0.2 2,-0.0 -3,-0.1 0.226 93.0 133.5-122.2 11.1 5.8 27.7 21.5 49 418 A A << - 0 0 13 -3,-0.7 -4,-0.0 -4,-0.5 5,-0.0 -0.352 58.0-111.7 -67.9 142.0 3.8 25.3 19.3 50 419 A S > - 0 0 63 1,-0.1 4,-2.5 -2,-0.1 5,-0.2 -0.091 32.3-102.4 -63.2 169.9 1.3 26.8 16.9 51 420 A Q H > S+ 0 0 159 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.898 122.5 49.6 -63.7 -42.2 -2.5 26.2 17.5 52 421 A S H > S+ 0 0 81 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.888 112.2 48.2 -65.0 -39.5 -2.6 23.5 14.8 53 422 A L H > S+ 0 0 19 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.918 109.3 52.0 -67.8 -44.4 0.4 21.7 16.3 54 423 A L H X S+ 0 0 32 -4,-2.5 4,-3.4 2,-0.2 5,-0.3 0.915 106.8 54.5 -57.7 -43.2 -1.0 21.8 19.8 55 424 A V H X S+ 0 0 74 -4,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.946 112.0 44.4 -54.3 -48.8 -4.2 20.3 18.6 56 425 A N H X S+ 0 0 13 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.925 114.9 46.9 -62.9 -47.3 -2.2 17.4 17.1 57 426 A L H X S+ 0 0 1 -4,-3.1 4,-3.0 1,-0.2 -2,-0.2 0.903 111.0 52.2 -63.5 -41.6 -0.0 17.0 20.2 58 427 A R H X S+ 0 0 75 -4,-3.4 4,-2.7 2,-0.2 -1,-0.2 0.894 108.7 50.6 -61.3 -41.9 -3.0 17.1 22.5 59 428 A A H X S+ 0 0 30 -4,-2.1 4,-2.4 -5,-0.3 -1,-0.2 0.936 112.1 47.6 -62.9 -43.7 -4.8 14.4 20.5 60 429 A M H X S+ 0 0 2 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.948 111.5 50.2 -60.7 -48.8 -1.6 12.2 20.7 61 430 A Q H X S+ 0 0 24 -4,-3.0 4,-1.0 1,-0.2 -1,-0.2 0.914 110.7 49.7 -55.4 -46.3 -1.3 12.8 24.4 62 431 A N H >< S+ 0 0 94 -4,-2.7 3,-0.7 1,-0.2 4,-0.3 0.908 109.9 50.8 -60.3 -44.2 -4.9 11.8 25.0 63 432 A F H >< S+ 0 0 19 -4,-2.4 3,-1.9 -35,-0.3 -1,-0.2 0.896 104.8 56.8 -61.8 -41.7 -4.5 8.7 22.9 64 433 A L H 3< S+ 0 0 27 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.755 96.4 65.3 -62.5 -24.5 -1.5 7.6 24.9 65 434 A Q T << S+ 0 0 139 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.591 81.9 102.6 -74.6 -9.9 -3.5 7.8 28.1 66 435 A L S < S- 0 0 56 -3,-1.9 5,-0.1 -4,-0.3 -3,-0.0 -0.316 92.1 -81.2 -70.2 157.9 -5.7 4.9 26.9 67 436 A P > - 0 0 77 0, 0.0 4,-2.6 0, 0.0 3,-0.3 -0.309 37.6-122.0 -59.2 143.7 -5.0 1.5 28.3 68 437 A E H > S+ 0 0 107 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.885 113.2 52.8 -54.7 -42.1 -2.1 -0.3 26.7 69 438 A A H > S+ 0 0 70 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.890 111.1 47.0 -62.0 -39.4 -4.3 -3.2 25.7 70 439 A E H > S+ 0 0 74 -3,-0.3 4,-2.6 2,-0.2 -2,-0.2 0.891 110.5 50.5 -70.9 -40.6 -6.7 -0.8 24.0 71 440 A R H X S+ 0 0 26 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.958 113.4 47.3 -60.7 -47.6 -4.0 1.1 22.2 72 441 A D H X S+ 0 0 40 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.860 110.6 50.8 -62.0 -37.3 -2.6 -2.2 20.9 73 442 A R H X S+ 0 0 135 -4,-2.0 4,-1.8 2,-0.2 -1,-0.2 0.923 111.0 50.0 -66.3 -41.2 -6.1 -3.4 19.9 74 443 A I H X S+ 0 0 45 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.914 111.0 48.4 -62.2 -43.2 -6.6 -0.2 18.0 75 444 A Y H X S+ 0 0 1 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.906 108.2 55.0 -63.7 -43.6 -3.2 -0.5 16.2 76 445 A Q H X S+ 0 0 85 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.886 110.6 44.1 -59.1 -41.5 -3.9 -4.1 15.2 77 446 A D H X S+ 0 0 65 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.896 113.6 49.6 -72.5 -38.7 -7.2 -3.3 13.5 78 447 A E H X S+ 0 0 34 -4,-2.0 4,-2.9 1,-0.2 -2,-0.2 0.861 106.1 57.5 -67.3 -35.3 -5.8 -0.2 11.7 79 448 A R H X S+ 0 0 108 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.862 104.3 52.8 -63.2 -35.3 -2.9 -2.2 10.5 80 449 A E H X S+ 0 0 120 -4,-1.1 4,-1.0 2,-0.2 -1,-0.2 0.923 112.4 43.1 -66.2 -44.0 -5.3 -4.6 8.8 81 450 A R H < S+ 0 0 147 -4,-1.6 3,-0.5 1,-0.2 -2,-0.2 0.908 112.7 54.3 -67.2 -41.0 -7.1 -1.8 7.0 82 451 A S H < S+ 0 0 64 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.892 102.6 55.8 -59.8 -41.5 -3.7 -0.2 6.2 83 452 A L H < 0 0 141 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.823 360.0 360.0 -60.9 -30.0 -2.5 -3.4 4.6 84 453 A R < 0 0 255 -4,-1.0 -3,-0.0 -3,-0.5 0, 0.0 -0.253 360.0 360.0 -72.4 360.0 -5.5 -3.2 2.3