==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 04-DEC-06 2O4A . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.YAMASAKI,T.AKIBA,K.HARATA . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5600.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 71.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 60.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 370 A E 0 0 215 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.4 -1.5 21.2 28.2 2 371 A V - 0 0 21 44,-0.1 2,-0.2 59,-0.0 56,-0.1 -0.924 360.0-123.5-120.0 142.5 1.1 19.0 26.7 3 372 A S > - 0 0 38 -2,-0.4 3,-1.6 1,-0.1 4,-0.2 -0.554 15.7-131.5 -80.7 146.3 4.2 17.5 28.2 4 373 A S T 3 S+ 0 0 69 1,-0.3 3,-0.2 -2,-0.2 4,-0.2 0.429 107.3 66.3 -76.3 2.6 7.6 18.2 26.6 5 374 A E T >> + 0 0 102 1,-0.1 4,-2.6 2,-0.1 3,-0.7 0.425 68.4 101.5-100.2 -3.2 8.2 14.4 26.9 6 375 A I H <> S+ 0 0 0 -3,-1.6 4,-2.6 1,-0.3 5,-0.2 0.866 77.3 56.1 -48.9 -43.8 5.4 13.7 24.3 7 376 A Y H 3> S+ 0 0 17 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.893 110.4 44.2 -58.5 -41.4 8.0 13.1 21.6 8 377 A Q H <> S+ 0 0 93 -3,-0.7 4,-2.8 1,-0.2 -1,-0.2 0.898 112.4 52.8 -70.6 -40.7 9.7 10.5 23.7 9 378 A W H X S+ 0 0 85 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.859 109.9 48.1 -62.5 -37.5 6.4 8.9 24.6 10 379 A V H X S+ 0 0 1 -4,-2.6 4,-2.6 -5,-0.2 -1,-0.2 0.934 113.3 47.0 -68.9 -44.3 5.4 8.7 21.0 11 380 A R H X S+ 0 0 93 -4,-2.1 4,-1.8 -5,-0.2 -2,-0.2 0.899 112.1 51.6 -61.7 -40.6 8.7 7.1 20.0 12 381 A D H X S+ 0 0 78 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.913 111.4 47.8 -61.3 -44.3 8.4 4.7 23.0 13 382 A E H X S+ 0 0 10 -4,-2.1 4,-2.6 2,-0.2 5,-0.3 0.892 106.4 54.4 -66.3 -44.2 4.9 3.7 21.8 14 383 A L H X>S+ 0 0 26 -4,-2.6 5,-1.6 1,-0.2 4,-0.9 0.935 113.4 44.7 -56.1 -45.4 5.7 3.1 18.2 15 384 A K H <5S+ 0 0 181 -4,-1.8 -2,-0.2 -5,-0.2 -1,-0.2 0.920 113.2 50.4 -64.8 -45.1 8.5 0.7 19.4 16 385 A R H <5S+ 0 0 88 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.932 119.1 34.5 -59.4 -51.8 6.2 -1.0 22.0 17 386 A A H <5S- 0 0 25 -4,-2.6 -1,-0.2 -5,-0.1 -2,-0.2 0.544 101.9-130.4 -83.1 -6.8 3.3 -1.7 19.7 18 387 A G T <5 + 0 0 48 -4,-0.9 2,-0.3 -5,-0.3 -3,-0.2 0.946 56.6 148.2 56.2 48.7 5.5 -2.3 16.6 19 388 A I < - 0 0 19 -5,-1.6 -1,-0.2 -6,-0.2 2,-0.1 -0.753 45.8-112.6-114.4 162.6 3.4 0.1 14.6 20 389 A S > - 0 0 59 -2,-0.3 4,-2.1 1,-0.1 5,-0.2 -0.453 26.9-112.5 -89.1 164.9 4.2 2.4 11.7 21 390 A Q H > S+ 0 0 54 1,-0.2 4,-3.2 2,-0.2 5,-0.3 0.896 117.0 57.0 -60.5 -41.4 4.1 6.2 11.7 22 391 A A H > S+ 0 0 49 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.942 107.5 45.7 -56.8 -51.8 1.1 6.0 9.3 23 392 A V H > S+ 0 0 10 1,-0.2 4,-2.1 2,-0.2 5,-0.3 0.944 117.4 43.3 -58.2 -48.5 -1.0 3.9 11.6 24 393 A F H X>S+ 0 0 0 -4,-2.1 4,-2.8 1,-0.2 5,-0.5 0.918 111.4 54.1 -65.2 -43.2 -0.2 6.0 14.7 25 394 A A H X5S+ 0 0 0 -4,-3.2 6,-1.7 -5,-0.2 4,-1.3 0.904 111.8 45.6 -58.2 -42.2 -0.7 9.3 12.8 26 395 A R H X5S+ 0 0 89 -4,-2.2 4,-1.5 4,-0.3 -2,-0.2 0.983 121.2 34.1 -66.4 -56.5 -4.1 8.3 11.6 27 396 A V H <5S+ 0 0 31 -4,-2.1 -2,-0.2 -5,-0.2 -3,-0.2 0.835 121.5 45.2 -70.3 -35.8 -5.6 6.9 14.9 28 397 A A H <5S- 0 0 7 -4,-2.8 35,-0.3 -5,-0.3 -3,-0.2 0.872 138.9 -5.5 -79.8 -40.7 -3.8 9.2 17.4 29 398 A F H < - 0 0 87 -2,-0.3 4,-1.8 -3,-0.1 3,-0.4 -0.456 33.6-106.6 -93.9 166.2 -0.7 11.5 7.6 33 402 A Q H > S+ 0 0 91 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.887 114.5 54.7 -54.4 -49.9 2.7 9.8 8.0 34 403 A G H > S+ 0 0 36 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.862 107.0 52.7 -56.4 -37.8 4.9 12.5 6.5 35 404 A L H > S+ 0 0 66 -3,-0.4 4,-2.7 2,-0.2 -1,-0.2 0.941 110.3 46.4 -64.3 -46.6 3.4 15.0 9.0 36 405 A L H X S+ 0 0 0 -4,-1.8 4,-2.8 1,-0.2 5,-0.2 0.908 109.6 56.0 -62.4 -40.6 4.2 12.8 12.0 37 406 A S H X S+ 0 0 41 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.934 111.7 41.9 -56.3 -48.9 7.7 12.3 10.6 38 407 A E H X S+ 0 0 75 -4,-2.2 4,-2.7 2,-0.2 5,-0.3 0.902 111.6 55.0 -66.5 -42.0 8.4 16.0 10.4 39 408 A I H X S+ 0 0 15 -4,-2.7 4,-2.1 1,-0.2 5,-0.4 0.915 113.4 42.9 -57.0 -43.1 6.8 16.6 13.8 40 409 A L H < S+ 0 0 7 -4,-2.8 -2,-0.2 2,-0.2 -1,-0.2 0.869 112.1 53.0 -71.4 -38.9 9.2 14.0 15.3 41 410 A R H < S+ 0 0 155 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.931 115.6 39.6 -62.6 -46.6 12.2 15.3 13.4 42 411 A K H < S- 0 0 108 -4,-2.7 -2,-0.2 -5,-0.1 -1,-0.2 0.899 80.8-169.0 -70.0 -43.3 11.7 18.8 14.6 43 412 A E < - 0 0 90 -4,-2.1 2,-0.1 -5,-0.3 -3,-0.1 0.928 17.5-160.4 49.5 53.0 10.7 17.9 18.2 44 413 A E - 0 0 74 -5,-0.4 -1,-0.2 1,-0.1 5,-0.1 -0.401 24.2-104.4 -67.5 136.0 9.6 21.5 18.8 45 414 A D > - 0 0 78 1,-0.2 3,-2.7 -2,-0.1 4,-0.2 -0.436 26.4-131.5 -61.5 123.3 9.3 22.6 22.5 46 415 A P T 3 S+ 0 0 14 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.581 103.6 66.7 -53.4 -11.3 5.6 22.7 23.2 47 416 A K T 3 S+ 0 0 159 1,-0.2 -2,-0.1 -43,-0.0 -3,-0.0 0.548 110.3 31.6 -90.2 -8.9 6.1 26.1 24.8 48 417 A T S < S+ 0 0 111 -3,-2.7 2,-0.3 2,-0.1 -1,-0.2 0.059 97.2 123.3-129.2 17.8 7.0 27.7 21.5 49 418 A A - 0 0 14 -4,-0.2 5,-0.0 -3,-0.2 -4,-0.0 -0.659 64.6-112.5 -89.5 137.5 4.8 25.5 19.4 50 419 A S > - 0 0 62 -2,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.069 29.2-109.8 -58.2 163.1 2.0 26.8 17.2 51 420 A Q H > S+ 0 0 164 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.823 120.0 57.4 -67.0 -30.0 -1.6 26.1 18.1 52 421 A S H > S+ 0 0 82 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.914 109.9 44.2 -66.5 -40.9 -1.9 23.7 15.2 53 422 A L H > S+ 0 0 14 2,-0.2 4,-3.2 1,-0.2 5,-0.3 0.962 110.6 54.0 -66.5 -49.9 1.0 21.7 16.6 54 423 A L H X S+ 0 0 58 -4,-2.7 4,-2.8 1,-0.3 5,-0.3 0.863 106.7 53.2 -52.6 -38.0 -0.4 21.9 20.1 55 424 A V H X S+ 0 0 60 -4,-2.1 4,-1.8 2,-0.2 -1,-0.3 0.943 112.2 44.1 -62.6 -46.6 -3.7 20.5 18.8 56 425 A N H X S+ 0 0 14 -4,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.923 115.8 47.1 -64.4 -45.6 -1.8 17.5 17.2 57 426 A L H X S+ 0 0 1 -4,-3.2 4,-2.7 1,-0.2 -2,-0.2 0.918 111.9 48.8 -64.6 -43.9 0.3 16.9 20.3 58 427 A R H X S+ 0 0 149 -4,-2.8 4,-2.6 -5,-0.3 -1,-0.2 0.863 110.0 53.2 -66.1 -32.0 -2.5 17.1 22.8 59 428 A A H X S+ 0 0 29 -4,-1.8 4,-2.0 -5,-0.3 -1,-0.2 0.912 110.9 46.5 -67.5 -39.3 -4.5 14.7 20.5 60 429 A M H X S+ 0 0 2 -4,-2.0 4,-1.8 2,-0.2 -2,-0.2 0.893 112.3 50.9 -67.8 -39.8 -1.5 12.3 20.6 61 430 A Q H X S+ 0 0 25 -4,-2.7 4,-0.9 2,-0.2 -2,-0.2 0.935 109.9 48.7 -64.2 -47.0 -1.2 12.7 24.4 62 431 A N H >< S+ 0 0 91 -4,-2.6 3,-0.9 1,-0.2 4,-0.4 0.919 109.7 52.1 -60.4 -43.9 -4.9 11.9 25.0 63 432 A F H >< S+ 0 0 17 -4,-2.0 3,-1.3 -35,-0.3 -1,-0.2 0.870 105.2 55.7 -60.8 -36.6 -4.7 8.8 22.8 64 433 A L H 3< S+ 0 0 31 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.728 97.2 64.8 -69.3 -19.8 -1.8 7.5 24.7 65 434 A Q T << S+ 0 0 136 -4,-0.9 -1,-0.3 -3,-0.9 -2,-0.2 0.586 81.4 101.1 -79.2 -9.0 -3.8 7.8 28.0 66 435 A L S < S- 0 0 53 -3,-1.3 5,-0.0 -4,-0.4 -3,-0.0 -0.340 93.0 -81.6 -70.3 156.7 -6.2 5.1 26.7 67 436 A P > - 0 0 80 0, 0.0 4,-2.2 0, 0.0 5,-0.2 -0.239 37.9-118.4 -57.8 151.3 -5.7 1.6 28.1 68 437 A E H > S+ 0 0 108 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.921 114.1 52.2 -58.1 -44.7 -2.9 -0.4 26.4 69 438 A A H > S+ 0 0 76 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.915 109.0 49.1 -58.4 -46.8 -5.4 -3.0 25.2 70 439 A E H > S+ 0 0 86 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.899 109.9 51.2 -61.8 -41.8 -7.7 -0.5 23.6 71 440 A R H X S+ 0 0 22 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.896 109.4 52.3 -62.5 -38.7 -4.8 1.2 21.8 72 441 A D H X S+ 0 0 57 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.880 108.7 48.1 -66.1 -38.3 -3.8 -2.2 20.4 73 442 A R H X S+ 0 0 152 -4,-1.9 4,-2.6 1,-0.2 -1,-0.2 0.934 111.2 52.1 -66.7 -44.4 -7.2 -3.0 19.1 74 443 A I H X S+ 0 0 30 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.868 109.3 49.3 -58.3 -40.4 -7.4 0.4 17.5 75 444 A Y H X S+ 0 0 5 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.945 110.9 49.9 -64.5 -48.6 -4.0 -0.1 15.8 76 445 A Q H X S+ 0 0 120 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.894 109.8 50.9 -57.0 -43.6 -5.1 -3.6 14.5 77 446 A D H X S+ 0 0 58 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.906 109.7 49.9 -62.1 -43.0 -8.4 -2.1 13.1 78 447 A E H X S+ 0 0 21 -4,-2.0 4,-2.6 2,-0.2 5,-0.3 0.892 108.0 54.2 -63.8 -39.2 -6.4 0.7 11.3 79 448 A R H X S+ 0 0 124 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.947 112.0 43.2 -59.1 -49.4 -4.1 -1.9 9.8 80 449 A E H X S+ 0 0 121 -4,-2.1 4,-0.8 2,-0.2 -1,-0.2 0.888 112.2 55.9 -62.4 -40.2 -7.0 -3.9 8.3 81 450 A R H >< S+ 0 0 141 -4,-2.4 3,-0.9 1,-0.2 -2,-0.2 0.935 113.9 36.7 -58.0 -53.6 -8.7 -0.7 7.2 82 451 A S H 3< S+ 0 0 78 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.774 104.0 74.3 -71.7 -26.1 -5.7 0.5 5.1 83 452 A L H 3< 0 0 129 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.796 360.0 360.0 -56.9 -29.0 -5.1 -3.1 4.1 84 453 A R << 0 0 267 -3,-0.9 -2,-0.2 -4,-0.8 -1,-0.2 0.988 360.0 360.0 -77.0 360.0 -8.1 -2.8 1.9