==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 16-OCT-02 1O6W . COMPND 2 MOLECULE: PRE-MRNA PROCESSING PROTEIN PRP40; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.WIESNER,G.STIER,M.SATTLER,M.J.MACIAS . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6733.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 25.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 220 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -84.1 7.0 -8.0 1.0 2 2 A S + 0 0 87 1,-0.0 17,-0.2 3,-0.0 18,-0.1 -0.351 360.0 136.5-158.6 65.9 8.8 -5.0 2.6 3 3 A I + 0 0 67 16,-0.1 16,-1.2 15,-0.1 17,-0.7 0.705 67.4 51.9 -88.4 -22.9 11.0 -3.2 0.2 4 4 A W E -A 18 0A 58 14,-0.2 2,-0.3 15,-0.1 14,-0.2 -0.827 61.4-175.8-117.3 156.6 9.9 0.3 1.3 5 5 A K E -A 17 0A 109 12,-0.8 12,-2.2 -2,-0.3 2,-0.6 -0.958 25.9-117.9-144.1 161.0 9.8 2.1 4.6 6 6 A E E +A 16 0A 115 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.906 39.2 166.9-107.2 121.3 8.7 5.4 6.1 7 7 A A E -A 15 0A 17 8,-2.3 8,-1.9 -2,-0.6 2,-0.4 -0.800 31.3-120.5-127.1 169.2 11.4 7.6 7.7 8 8 A K E -A 14 0A 143 -2,-0.3 6,-0.2 6,-0.2 -2,-0.0 -0.940 25.2-134.4-115.9 133.1 11.7 11.2 8.9 9 9 A D > - 0 0 47 4,-2.0 3,-1.6 -2,-0.4 -1,-0.1 0.052 41.4 -83.1 -71.1-174.0 14.4 13.6 7.5 10 10 A A T 3 S+ 0 0 101 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.743 136.9 38.4 -64.4 -23.3 16.6 15.9 9.6 11 11 A S T 3 S- 0 0 99 2,-0.1 -1,-0.3 0, 0.0 -2,-0.1 0.115 130.8 -93.6-112.9 18.4 13.7 18.4 9.7 12 12 A G < + 0 0 31 -3,-1.6 2,-0.4 1,-0.2 -2,-0.1 0.797 68.6 163.3 75.6 30.9 11.1 15.7 10.1 13 13 A R - 0 0 123 1,-0.0 -4,-2.0 2,-0.0 2,-0.5 -0.694 38.1-125.4 -85.7 128.3 10.3 15.3 6.4 14 14 A I E +A 8 0A 78 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.632 41.3 161.3 -79.3 119.9 8.5 12.1 5.5 15 15 A Y E -A 7 0A 53 -8,-1.9 -8,-2.3 -2,-0.5 2,-0.5 -0.994 37.9-122.9-139.6 144.4 10.2 10.1 2.8 16 16 A Y E -AB 6 25A 46 9,-0.5 9,-1.8 -2,-0.3 2,-0.5 -0.764 28.4-165.9 -90.7 123.0 10.0 6.5 1.6 17 17 A Y E -AB 5 24A 74 -12,-2.2 -12,-0.8 -2,-0.5 2,-0.5 -0.945 14.4-140.3-116.3 127.0 13.3 4.6 1.7 18 18 A N E > -AB 4 23A 14 5,-1.8 5,-0.5 -2,-0.5 -14,-0.2 -0.709 17.2-178.8 -83.6 122.0 14.0 1.3 0.0 19 19 A T T 5S+ 0 0 61 -16,-1.2 -1,-0.2 -2,-0.5 -15,-0.1 0.693 74.7 69.8 -93.8 -22.2 16.1 -0.9 2.3 20 20 A L T 5S+ 0 0 101 -17,-0.7 -1,-0.1 1,-0.2 -16,-0.1 0.931 124.2 13.6 -59.6 -46.0 16.4 -3.8 -0.2 21 21 A T T 5S- 0 0 81 -18,-0.3 -1,-0.2 2,-0.1 -2,-0.2 0.328 105.5-121.6-109.8 2.3 18.6 -1.7 -2.5 22 22 A K T 5 + 0 0 163 1,-0.2 -3,-0.2 -5,-0.1 2,-0.2 0.784 63.5 146.8 61.0 29.3 19.3 0.9 0.2 23 23 A K E < -B 18 0A 138 -5,-0.5 -5,-1.8 1,-0.0 2,-0.3 -0.500 39.2-135.2 -93.5 163.9 17.8 3.6 -2.1 24 24 A S E +B 17 0A 88 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.920 27.0 157.3-123.5 149.6 15.9 6.7 -1.1 25 25 A T E -B 16 0A 40 -9,-1.8 -9,-0.5 -2,-0.3 3,-0.1 -0.964 31.7-155.0-158.0 169.1 12.7 8.3 -2.4 26 26 A W S S+ 0 0 119 -2,-0.3 2,-0.5 -11,-0.3 -9,-0.1 0.531 76.4 74.3-124.7 -20.1 9.9 10.7 -1.4 27 27 A E S S- 0 0 147 -11,-0.1 -1,-0.1 -12,-0.1 -12,-0.0 -0.861 88.9-110.7-103.5 130.7 7.1 9.6 -3.8 28 28 A K - 0 0 72 -2,-0.5 5,-0.1 1,-0.1 -1,-0.0 -0.404 36.4-127.8 -59.9 113.7 5.2 6.4 -3.2 29 29 A P >> - 0 0 34 0, 0.0 3,-2.4 0, 0.0 4,-1.1 -0.319 21.4-111.5 -63.6 143.0 6.2 4.0 -6.1 30 30 A K H 3> S+ 0 0 179 1,-0.3 4,-2.5 2,-0.2 3,-0.5 0.820 119.2 58.7 -46.1 -38.1 3.3 2.4 -8.0 31 31 A E H 34 S+ 0 0 140 1,-0.3 4,-0.5 2,-0.2 -1,-0.3 0.786 107.6 47.6 -64.4 -24.1 4.2 -1.0 -6.5 32 32 A L H <> S+ 0 0 40 -3,-2.4 4,-0.6 2,-0.2 -1,-0.3 0.664 116.4 43.9 -86.3 -20.0 3.7 0.6 -3.1 33 33 A I H X S+ 0 0 85 -4,-1.1 4,-0.7 -3,-0.5 -2,-0.2 0.652 110.1 55.5 -94.8 -24.1 0.4 2.1 -4.3 34 34 A S H X S+ 0 0 55 -4,-2.5 4,-0.5 -5,-0.2 -2,-0.2 0.605 101.6 57.4 -85.9 -16.3 -0.8 -1.1 -6.1 35 35 A Q H >> S+ 0 0 91 -4,-0.5 3,-1.3 -5,-0.2 4,-1.3 0.957 104.2 47.2 -78.8 -57.2 -0.6 -3.3 -3.0 36 36 A E H 3X S+ 0 0 66 -4,-0.6 4,-2.1 1,-0.3 3,-0.3 0.849 111.3 54.9 -52.1 -36.3 -2.8 -1.5 -0.6 37 37 A E H 3X S+ 0 0 110 -4,-0.7 4,-1.7 1,-0.2 -1,-0.3 0.798 105.6 52.7 -66.5 -31.1 -5.4 -1.2 -3.4 38 38 A L H X>S+ 0 0 2 -4,-2.1 5,-2.7 -5,-0.2 4,-2.3 0.961 105.8 50.1 -54.8 -57.5 -8.7 -3.1 -0.2 41 41 A R H 3<5S+ 0 0 199 -4,-1.7 -1,-0.2 3,-0.2 -2,-0.2 0.908 101.8 60.2 -46.9 -58.2 -10.5 -5.0 -2.9 42 42 A E H 3<5S+ 0 0 110 -4,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.826 118.9 29.3 -44.0 -42.4 -10.3 -8.4 -1.2 43 43 A N H <<5S- 0 0 71 -4,-1.3 -1,-0.3 -3,-0.7 -2,-0.2 0.677 119.1-105.4 -95.1 -19.6 -12.3 -7.1 1.8 44 44 A G T <5 + 0 0 25 -4,-2.3 17,-0.4 1,-0.2 2,-0.3 0.789 66.5 146.6 100.0 35.2 -14.3 -4.5 -0.2 45 45 A W < - 0 0 35 -5,-2.7 2,-0.3 14,-0.2 -1,-0.2 -0.694 29.7-155.3-103.1 157.1 -12.7 -1.3 0.9 46 46 A K E -C 58 0B 103 12,-1.2 12,-1.4 -2,-0.3 2,-0.4 -0.927 7.9-136.2-130.2 154.2 -12.2 1.9 -1.2 47 47 A A E +C 57 0B 55 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.917 33.1 145.6-115.2 138.3 -9.7 4.8 -1.0 48 48 A A E -C 56 0B 34 8,-1.4 8,-2.3 -2,-0.4 2,-0.3 -0.924 31.5-127.5-154.9 176.2 -10.5 8.5 -1.4 49 49 A K E -C 55 0B 137 -2,-0.3 6,-0.2 6,-0.3 2,-0.1 -0.936 15.3-129.3-134.8 157.7 -9.5 11.9 -0.2 50 50 A T > - 0 0 49 4,-1.9 3,-1.8 -2,-0.3 5,-0.0 -0.370 38.5 -95.6 -96.2 178.6 -11.2 15.0 1.3 51 51 A A T 3 S+ 0 0 116 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.806 128.5 54.4 -63.7 -28.2 -11.1 18.6 0.4 52 52 A D T 3 S- 0 0 131 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.088 126.2-103.5 -92.3 22.1 -8.4 19.0 3.0 53 53 A G < + 0 0 42 -3,-1.8 2,-0.5 1,-0.2 -2,-0.1 0.632 68.4 159.6 66.2 13.1 -6.4 16.2 1.4 54 54 A K - 0 0 110 1,-0.1 -4,-1.9 -5,-0.0 2,-0.6 -0.560 36.3-139.6 -71.6 120.3 -7.5 13.9 4.1 55 55 A V E +C 49 0B 61 -2,-0.5 2,-0.4 -6,-0.2 -6,-0.3 -0.716 29.7 173.7 -84.8 117.8 -7.2 10.3 2.9 56 56 A Y E -C 48 0B 82 -8,-2.3 -8,-1.4 -2,-0.6 2,-0.4 -0.988 19.9-154.0-131.1 136.4 -10.1 8.2 4.0 57 57 A Y E +CD 47 66B 44 9,-2.5 9,-3.1 -2,-0.4 2,-0.3 -0.862 17.7 179.4-107.2 138.9 -11.1 4.6 3.2 58 58 A Y E -CD 46 65B 87 -12,-1.4 -12,-1.2 -2,-0.4 7,-0.2 -0.995 27.5-129.8-142.4 147.9 -14.7 3.4 3.3 59 59 A N E >> - D 0 64B 6 5,-1.5 4,-1.7 -2,-0.3 5,-1.2 -0.855 10.4-163.1 -99.1 111.8 -16.6 0.2 2.7 60 60 A P T 45S+ 0 0 70 0, 0.0 -1,-0.1 0, 0.0 -15,-0.1 0.491 89.5 57.4 -71.2 -2.5 -19.6 0.7 0.3 61 61 A T T 45S+ 0 0 124 -17,-0.4 -16,-0.1 3,-0.1 -17,-0.0 0.787 123.4 18.3 -96.5 -34.4 -21.0 -2.6 1.5 62 62 A T T 45S- 0 0 67 -3,-0.4 -1,-0.0 2,-0.1 -3,-0.0 0.341 100.6-121.6-115.4 0.4 -21.2 -1.9 5.2 63 63 A R T <5 + 0 0 220 -4,-1.7 2,-0.3 1,-0.2 -5,-0.0 0.933 56.1 163.9 56.2 47.2 -21.1 1.9 4.9 64 64 A E E < -D 59 0B 90 -5,-1.2 -5,-1.5 2,-0.0 2,-0.4 -0.697 27.5-153.5 -98.6 149.8 -18.0 1.9 7.1 65 65 A T E +D 58 0B 109 -2,-0.3 2,-0.4 -7,-0.2 -7,-0.2 -0.977 16.4 170.9-129.7 122.4 -15.5 4.7 7.5 66 66 A S E -D 57 0B 41 -9,-3.1 -9,-2.5 -2,-0.4 3,-0.1 -0.976 30.3-148.8-130.2 142.0 -11.8 4.3 8.5 67 67 A W S S+ 0 0 164 -2,-0.4 2,-0.3 -11,-0.2 -12,-0.1 0.371 86.0 30.9 -88.3 4.3 -9.0 6.9 8.5 68 68 A T S S- 0 0 98 -11,-0.2 -1,-0.1 3,-0.0 3,-0.1 -0.977 98.8 -81.1-161.9 147.4 -6.4 4.2 7.7 69 69 A I - 0 0 41 -2,-0.3 3,-0.1 1,-0.1 -2,-0.1 -0.279 56.4-116.6 -51.5 112.6 -6.0 0.9 5.8 70 70 A P - 0 0 32 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.179 36.1 -95.5 -52.4 141.2 -7.4 -1.8 8.2 71 71 A A - 0 0 90 -3,-0.1 2,-0.6 1,-0.1 -3,-0.0 -0.448 39.3-164.6 -65.0 123.7 -4.8 -4.3 9.3 72 72 A F - 0 0 61 -2,-0.3 3,-0.2 -3,-0.1 -1,-0.1 -0.875 8.9-151.3-115.8 98.7 -4.9 -7.4 7.1 73 73 A E - 0 0 165 -2,-0.6 2,-0.5 1,-0.2 0, 0.0 -0.070 46.3 -63.8 -60.8 166.1 -3.0 -10.3 8.6 74 74 A K 0 0 204 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.366 360.0 360.0 -56.9 105.1 -1.4 -13.0 6.5 75 75 A K 0 0 217 -2,-0.5 -1,-0.2 -3,-0.2 -2,-0.1 0.785 360.0 360.0 -65.3 360.0 -4.4 -14.6 4.7