==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 29-OCT-02 1O7B . COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.D.BLUNDELL,P.TERIETE,J.D.KAHMANN,A.R.PICKFORD, . 98 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6362.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 63.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 17.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 T G 0 0 54 0, 0.0 93,-1.6 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 123.7 -9.7 2.7 8.0 2 2 T V E +A 93 0A 20 91,-0.3 91,-0.3 33,-0.2 2,-0.3 -0.692 360.0 173.9 -87.2 133.0 -6.8 2.0 5.7 3 3 T Y E -A 92 0A 36 89,-1.7 89,-0.6 -2,-0.4 2,-0.4 -0.850 28.8-112.6-133.0 168.7 -7.6 0.6 2.3 4 4 T H E +A 91 0A 44 -2,-0.3 2,-0.3 87,-0.3 87,-0.2 -0.862 35.4 168.3-107.4 138.1 -5.8 -0.4 -0.9 5 5 T R E -A 90 0A 93 85,-2.2 85,-1.2 -2,-0.4 2,-0.1 -0.977 20.3-140.0-145.3 156.4 -6.3 1.5 -4.2 6 6 T E - 0 0 54 -2,-0.3 5,-0.2 1,-0.3 83,-0.1 -0.283 41.4 -64.6-103.7-169.1 -4.7 1.7 -7.7 7 7 T A S S- 0 0 9 3,-2.1 -1,-0.3 81,-0.1 7,-0.1 0.162 77.4 -63.9 -64.2-170.9 -3.9 4.5 -10.1 8 8 T R S S- 0 0 245 1,-0.2 -1,-0.1 3,-0.0 3,-0.1 0.806 121.6 -32.8 -47.4 -31.9 -6.6 6.6 -11.9 9 9 T S S S+ 0 0 117 1,-0.2 2,-0.2 0, 0.0 -1,-0.2 0.302 123.4 88.1-164.4 -19.0 -7.6 3.4 -13.5 10 10 T G - 0 0 23 3,-0.1 -3,-2.1 -4,-0.0 2,-0.3 -0.559 63.2-135.3 -94.3 159.9 -4.5 1.3 -13.9 11 11 T K S S+ 0 0 124 1,-0.2 78,-0.1 -5,-0.2 -5,-0.1 -0.799 75.8 14.9-113.2 155.6 -2.9 -1.1 -11.5 12 12 T Y S S+ 0 0 74 -2,-0.3 -1,-0.2 37,-0.1 77,-0.2 0.953 100.5 91.0 47.6 64.6 0.7 -1.6 -10.5 13 13 T K + 0 0 103 75,-1.4 2,-0.3 -3,-0.2 76,-0.1 0.127 51.4 121.8-174.1 33.3 1.9 1.7 -11.9 14 14 T L B -D 88 0B 6 74,-1.6 74,-1.8 -7,-0.1 2,-0.1 -0.799 39.6-157.2-108.7 151.3 1.7 4.4 -9.1 15 15 T T > - 0 0 27 -2,-0.3 4,-1.3 72,-0.2 70,-0.2 -0.173 35.5 -92.2-105.8-159.1 4.4 6.5 -7.7 16 16 T Y H > S+ 0 0 33 68,-1.4 4,-2.1 2,-0.2 5,-0.2 0.943 123.5 38.5 -83.8 -56.0 4.7 8.4 -4.4 17 17 T A H > S+ 0 0 72 67,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.802 122.1 48.0 -64.4 -29.4 3.3 11.8 -5.3 18 18 T E H > S+ 0 0 95 2,-0.2 4,-3.1 1,-0.1 5,-0.3 0.972 109.6 48.2 -74.9 -58.5 0.7 10.0 -7.4 19 19 T A H X S+ 0 0 0 -4,-1.3 4,-1.5 1,-0.2 -2,-0.2 0.860 113.0 52.0 -49.5 -39.9 -0.4 7.4 -4.9 20 20 T K H X S+ 0 0 64 -4,-2.1 4,-2.2 2,-0.2 3,-0.2 0.945 110.6 45.4 -63.6 -50.5 -0.7 10.2 -2.3 21 21 T A H X S+ 0 0 52 -4,-1.6 4,-1.7 1,-0.2 -2,-0.2 0.920 109.0 56.3 -59.6 -45.6 -2.9 12.4 -4.6 22 22 T V H X S+ 0 0 19 -4,-3.1 4,-1.1 1,-0.2 -1,-0.2 0.854 108.1 50.7 -54.6 -36.3 -5.0 9.4 -5.5 23 23 T a H >< S+ 0 0 0 -4,-1.5 3,-1.2 -5,-0.3 5,-0.3 0.979 109.2 46.3 -65.6 -59.2 -5.7 8.9 -1.8 24 24 T E H 3< S+ 0 0 116 -4,-2.2 3,-0.3 1,-0.3 -1,-0.2 0.723 113.4 53.5 -57.1 -21.8 -6.7 12.5 -1.1 25 25 T F H 3< S+ 0 0 185 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.734 109.4 46.2 -85.0 -25.4 -8.9 12.3 -4.1 26 26 T E S << S- 0 0 65 -3,-1.2 -2,-0.2 -4,-1.1 -1,-0.2 0.213 131.6 -88.3 -99.9 12.5 -10.6 9.1 -2.9 27 27 T G S S+ 0 0 18 -3,-0.3 2,-0.3 -4,-0.3 -3,-0.2 0.978 97.6 48.9 79.3 67.9 -11.1 10.5 0.6 28 28 T G - 0 0 3 -5,-0.3 -1,-0.3 -8,-0.1 2,-0.3 -0.978 68.6-112.3 163.0-170.1 -8.0 9.6 2.5 29 29 T H E -B 93 0A 92 64,-1.5 64,-0.6 -2,-0.3 2,-0.5 -0.932 49.0 -61.6-149.4 170.7 -4.2 9.7 2.5 30 30 T L E -B 92 0A 13 -2,-0.3 23,-0.3 62,-0.2 62,-0.2 -0.421 59.3-144.3 -60.6 110.1 -1.2 7.4 2.3 31 31 T A - 0 0 1 60,-2.6 22,-1.9 -2,-0.5 2,-0.3 0.272 14.3-112.0 -60.0-165.7 -1.5 5.2 5.5 32 32 T T > - 0 0 52 20,-0.2 4,-2.2 1,-0.1 5,-0.2 -0.862 21.1-105.3-131.8 166.2 1.5 4.0 7.5 33 33 T Y H > S+ 0 0 94 -2,-0.3 4,-1.6 2,-0.2 3,-0.2 0.947 121.1 49.5 -54.7 -53.0 3.2 0.8 8.4 34 34 T K H >> S+ 0 0 177 1,-0.3 4,-1.8 2,-0.2 3,-0.6 0.918 110.6 50.3 -53.0 -47.6 1.7 0.7 11.9 35 35 T Q H 3> S+ 0 0 56 1,-0.3 4,-1.4 2,-0.2 -1,-0.3 0.859 105.0 58.4 -60.1 -35.6 -1.7 1.4 10.4 36 36 T L H 3X S+ 0 0 0 -4,-2.2 4,-1.4 2,-0.2 -1,-0.3 0.844 103.7 53.7 -63.1 -33.0 -1.1 -1.5 8.0 37 37 T E H XX S+ 0 0 102 -4,-1.6 4,-2.1 -3,-0.6 3,-1.0 0.976 104.7 50.6 -64.8 -57.1 -0.6 -3.8 11.0 38 38 T A H 3< S+ 0 0 44 -4,-1.8 4,-0.5 1,-0.3 -1,-0.2 0.804 112.8 50.2 -50.9 -30.0 -3.9 -2.9 12.6 39 39 T A H 3X>S+ 0 0 9 -4,-1.4 5,-1.1 -5,-0.2 4,-0.6 0.797 105.8 55.2 -78.7 -30.6 -5.4 -3.7 9.3 40 40 T R H X<5S+ 0 0 93 -4,-1.4 3,-0.7 -3,-1.0 -2,-0.2 0.849 97.5 63.1 -70.3 -35.7 -3.6 -7.0 9.1 41 41 T K T 3<5S+ 0 0 169 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.792 105.8 46.4 -59.9 -28.7 -5.1 -8.1 12.4 42 42 T I T 345S- 0 0 133 -4,-0.5 -1,-0.3 -3,-0.4 -2,-0.2 0.639 133.3 -90.0 -87.9 -16.6 -8.5 -8.0 10.8 43 43 T G T <<5 + 0 0 50 -3,-0.7 2,-1.2 -4,-0.6 -3,-0.2 0.778 64.1 163.0 108.7 45.1 -7.4 -9.8 7.7 44 44 T F < + 0 0 36 -5,-1.1 2,-0.6 -7,-0.2 -1,-0.1 -0.694 11.7 162.1 -96.7 82.6 -6.2 -7.1 5.3 45 45 T H + 0 0 53 -2,-1.2 2,-0.4 16,-0.1 16,-0.2 -0.908 2.5 160.2-108.0 119.7 -4.1 -9.0 2.8 46 46 T V - 0 0 22 14,-0.8 4,-0.1 -2,-0.6 15,-0.0 -0.944 32.6-158.1-142.4 117.0 -3.3 -7.4 -0.5 47 47 T b S S+ 0 0 18 -2,-0.4 2,-1.3 1,-0.1 14,-0.1 0.525 76.2 96.5 -69.4 -3.4 -0.4 -8.4 -2.9 48 48 T A S S- 0 0 5 12,-0.1 42,-0.2 40,-0.1 -1,-0.1 -0.690 82.7-132.5 -91.3 87.2 -0.7 -4.9 -4.3 49 49 T A - 0 0 0 -2,-1.3 40,-3.5 10,-0.1 2,-0.5 -0.040 20.0-143.3 -38.9 129.2 2.0 -3.0 -2.4 50 50 T G E -c 89 0A 0 8,-1.9 8,-0.4 38,-0.2 40,-0.3 -0.899 12.7-120.1-108.2 125.6 0.5 0.2 -1.1 51 51 T W E +c 90 0A 2 38,-1.2 40,-0.5 -2,-0.5 2,-0.3 -0.422 50.9 151.4 -62.7 121.3 2.6 3.4 -1.0 52 52 T M B >> +E 56 0C 1 4,-2.3 4,-2.1 -2,-0.3 3,-1.1 -0.841 35.4 15.4-142.2 178.2 2.8 4.6 2.6 53 53 T A T 34 S- 0 0 33 -22,-1.9 -23,-0.1 -23,-0.3 -21,-0.0 0.083 125.2 -23.7 46.5-164.3 5.0 6.6 5.0 54 54 T K T 34 S- 0 0 170 1,-0.2 -1,-0.3 -3,-0.0 -22,-0.0 0.686 131.3 -51.4 -47.7 -17.1 7.8 8.7 3.6 55 55 T G T <4 S+ 0 0 3 -3,-1.1 2,-0.4 1,-0.1 26,-0.3 0.449 87.6 155.5 147.3 31.2 7.5 6.4 0.6 56 56 T R B < -E 52 0C 106 -4,-2.1 -4,-2.3 24,-0.1 2,-0.4 -0.664 24.0-158.2 -85.0 133.4 7.7 2.8 1.9 57 57 T V + 0 0 4 -2,-0.4 21,-0.6 -6,-0.2 22,-0.5 -0.896 23.0 143.3-114.7 142.6 6.0 0.1 -0.2 58 58 T G E -F 77 0D 1 -2,-0.4 -8,-1.9 -8,-0.4 19,-0.3 -0.985 32.9-145.9-167.4 163.4 4.8 -3.3 0.9 59 59 T Y E -F 76 0D 40 17,-1.1 2,-0.8 -2,-0.3 17,-0.6 -0.840 17.1-141.4-145.0 104.1 2.2 -6.0 0.5 60 60 T P E -F 75 0D 0 0, 0.0 2,-1.1 0, 0.0 -14,-0.8 -0.496 18.6-161.7 -66.8 103.5 1.0 -8.2 3.4 61 61 T I E +F 74 0D 1 13,-1.8 13,-1.0 -2,-0.8 -16,-0.1 -0.740 30.2 151.2 -93.4 94.4 0.5 -11.6 1.7 62 62 T V + 0 0 66 -2,-1.1 -1,-0.2 1,-0.2 13,-0.0 0.802 68.3 53.2 -89.3 -34.5 -1.8 -13.6 4.1 63 63 T K S S- 0 0 146 -3,-0.2 -1,-0.2 2,-0.0 6,-0.2 -0.862 84.9-144.5-107.5 100.7 -3.3 -15.8 1.4 64 64 T P + 0 0 80 0, 0.0 9,-0.0 0, 0.0 -2,-0.0 -0.210 39.0 125.9 -61.1 151.1 -0.6 -17.5 -0.8 65 65 T G >> - 0 0 28 0, 0.0 3,-1.6 0, 0.0 4,-1.4 -0.928 60.4 -45.3 170.1 167.7 -1.2 -18.0 -4.5 66 66 T P T 34 S+ 0 0 131 0, 0.0 4,-0.1 0, 0.0 3,-0.0 -0.254 124.5 4.9 -55.1 133.3 0.1 -17.4 -8.0 67 67 T N T 34 S+ 0 0 154 2,-0.2 3,-0.1 1,-0.2 -20,-0.0 0.820 139.1 47.7 59.9 31.8 1.4 -13.9 -8.6 68 68 T b T <4 S+ 0 0 43 -3,-1.6 2,-0.6 1,-0.3 -1,-0.2 0.128 83.5 73.3-155.9 -77.2 0.8 -13.2 -4.9 69 69 T G < - 0 0 24 -4,-1.4 -1,-0.3 -6,-0.2 -2,-0.2 -0.407 52.1-170.3 -60.1 107.4 2.0 -15.6 -2.3 70 70 T F - 0 0 159 -2,-0.6 -1,-0.2 2,-0.4 3,-0.1 0.350 56.7 -95.0 -80.9 7.0 5.8 -15.1 -2.3 71 71 T G S S+ 0 0 69 1,-0.3 2,-0.2 -6,-0.1 -2,-0.1 -0.281 103.1 77.7 110.2 -46.6 6.0 -18.2 -0.1 72 72 T K S S- 0 0 173 2,-0.1 2,-0.5 1,-0.0 -2,-0.4 -0.531 75.3-125.8 -94.9 163.5 6.1 -16.5 3.3 73 73 T T + 0 0 96 -2,-0.2 2,-0.2 -3,-0.1 -11,-0.2 -0.943 63.4 50.7-114.9 124.9 3.2 -15.0 5.2 74 74 T G E S-F 61 0D 10 -13,-1.0 -13,-1.8 -2,-0.5 2,-0.2 -0.769 95.1 -25.8 141.1 173.9 3.2 -11.4 6.4 75 75 T I E -F 60 0D 23 -15,-0.3 2,-1.3 -2,-0.2 -2,-0.1 -0.370 54.8-147.9 -58.5 118.5 3.8 -7.8 5.3 76 76 T I E +F 59 0D 34 -17,-0.6 -17,-1.1 -2,-0.2 2,-0.5 -0.688 35.9 153.6 -93.3 85.3 6.2 -7.9 2.3 77 77 T D E -F 58 0D 37 -2,-1.3 -19,-0.2 -19,-0.3 3,-0.1 -0.953 26.3-178.5-119.1 117.1 8.1 -4.7 2.7 78 78 T Y - 0 0 211 -21,-0.6 -20,-0.1 -2,-0.5 -1,-0.1 0.338 49.8-119.3 -91.8 6.0 11.7 -4.4 1.3 79 79 T G - 0 0 19 -22,-0.5 -1,-0.2 2,-0.1 -22,-0.1 0.026 59.5 -19.0 77.7 168.9 12.0 -0.9 2.6 80 80 T I - 0 0 86 1,-0.2 -24,-0.1 -3,-0.1 4,-0.1 -0.121 54.1-147.8 -46.0 134.8 12.6 2.3 0.6 81 81 T R - 0 0 106 -26,-0.3 -1,-0.2 2,-0.2 4,-0.1 0.020 41.5-109.4 -96.4 26.7 14.0 1.5 -2.9 82 82 T L S S+ 0 0 162 2,-0.1 2,-0.2 1,-0.0 -2,-0.1 0.698 103.9 71.4 54.2 17.8 16.0 4.7 -2.9 83 83 T N > - 0 0 81 -28,-0.1 3,-0.8 1,-0.0 -2,-0.2 -0.719 61.6-163.7-165.9 108.7 13.4 5.7 -5.6 84 84 T R T 3 S+ 0 0 147 1,-0.2 -68,-1.4 -2,-0.2 -67,-0.2 0.086 78.3 90.3 -81.6 25.6 9.8 6.6 -5.0 85 85 T S T 3 + 0 0 76 -70,-0.2 -1,-0.2 -4,-0.1 -70,-0.1 0.227 59.6 123.8-103.6 11.5 9.3 6.2 -8.8 86 86 T E < - 0 0 37 -3,-0.8 2,-0.7 1,-0.1 -73,-0.1 -0.005 68.5-108.9 -63.8 175.7 8.4 2.5 -8.5 87 87 T R + 0 0 159 -74,-0.1 2,-0.2 -75,-0.1 -72,-0.2 -0.867 65.0 116.2-115.6 97.7 5.2 1.0 -9.8 88 88 T W B -D 14 0B 34 -74,-1.8 -74,-1.6 -2,-0.7 -75,-1.4 -0.566 56.3 -99.8-137.3-159.0 2.8 -0.0 -7.0 89 89 T D E - c 0 50A 0 -40,-3.5 -38,-1.2 -2,-0.2 2,-0.3 0.068 36.4-103.8-107.9-141.6 -0.6 0.8 -5.5 90 90 T A E -Ac 5 51A 0 -85,-1.2 -85,-2.2 -40,-0.3 2,-1.4 -0.857 6.2-149.3-161.0 121.4 -1.6 2.9 -2.5 91 91 T Y E -A 4 0A 0 -40,-0.5 -60,-2.6 -2,-0.3 -87,-0.3 -0.592 32.3-169.6 -91.2 74.9 -2.8 2.0 1.0 92 92 T a E -AB 3 30A 0 -2,-1.4 -89,-1.7 -89,-0.6 2,-0.3 0.045 4.1-159.6 -56.5 172.1 -5.1 4.9 1.7 93 93 T Y E +AB 2 29A 69 -64,-0.6 -64,-1.5 -91,-0.3 -91,-0.3 -0.928 21.9 148.5-160.9 132.8 -6.5 5.7 5.1 94 94 T N - 0 0 33 -93,-1.6 -2,-0.0 -2,-0.3 -63,-0.0 -0.767 40.2-143.4-170.2 119.9 -9.5 7.7 6.3 95 95 T P S S+ 0 0 108 0, 0.0 -67,-0.1 0, 0.0 -93,-0.1 0.568 112.8 16.4 -61.5 -6.0 -11.8 7.2 9.3 96 96 T H S S+ 0 0 153 -69,-0.1 -2,-0.1 -95,-0.1 -68,-0.1 0.572 73.5 177.6-131.4 -45.8 -14.5 8.5 7.0 97 97 T A 0 0 34 1,-0.2 -69,-0.1 -4,-0.1 -3,-0.1 0.841 360.0 360.0 33.3 53.0 -13.2 8.1 3.4 98 98 T K 0 0 243 0, 0.0 -1,-0.2 0, 0.0 -71,-0.1 -0.906 360.0 360.0-104.4 360.0 -16.5 9.4 2.1