==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=9-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID TRANSPORT 29-NOV-02 1O8T . COMPND 2 MOLECULE: APOLIPOPROTEIN C-II; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.ZDUNEK,G.V.MARTINEZ,J.SCHLEUCHER,P.O.LYCKSELL,Y.YIN, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7505.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 89.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A T 0 0 143 0, 0.0 23,-0.2 0, 0.0 24,-0.1 0.000 360.0 360.0 360.0 128.8 27.9 0.1 6.2 2 2 A Q - 0 0 137 22,-0.1 19,-0.0 1,-0.1 18,-0.0 -0.275 360.0-112.8 -78.0 167.4 25.6 -2.4 8.0 3 3 A Q - 0 0 61 11,-0.0 2,-2.1 -2,-0.0 -1,-0.1 -0.912 15.8-139.9-107.8 119.7 25.3 -2.9 11.8 4 4 A P - 0 0 101 0, 0.0 2,-0.1 0, 0.0 -1,-0.0 -0.473 31.8-176.2 -77.3 73.9 26.5 -6.2 13.2 5 5 A Q - 0 0 41 -2,-2.1 -2,-0.0 1,-0.1 0, 0.0 -0.427 26.1-138.9 -72.6 145.9 23.7 -6.7 15.8 6 6 A Q S S+ 0 0 168 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 0.985 86.6 62.1 -67.8 -60.6 23.9 -9.6 18.2 7 7 A D S S- 0 0 38 1,-0.1 4,-0.3 2,-0.0 -2,-0.1 -0.499 70.5-152.9 -71.3 132.3 20.2 -10.6 18.1 8 8 A E S S+ 0 0 156 -2,-0.2 -1,-0.1 2,-0.1 -3,-0.1 0.928 76.8 68.2 -70.2 -46.9 19.0 -11.7 14.7 9 9 A M S S- 0 0 115 1,-0.1 2,-2.4 5,-0.0 5,-0.2 -0.171 113.3 -76.1 -69.0 166.3 15.4 -10.6 15.4 10 10 A P - 0 0 99 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.387 66.8-180.0 -66.8 76.1 14.3 -7.0 15.8 11 11 A S > - 0 0 29 -2,-2.4 4,-2.9 -4,-0.3 5,-0.2 -0.199 45.3 -95.4 -72.9 169.0 15.7 -6.6 19.3 12 12 A P H > S+ 0 0 96 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.879 129.5 43.8 -52.5 -41.4 15.4 -3.3 21.4 13 13 A T H > S+ 0 0 83 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.885 112.3 52.3 -71.9 -40.1 19.0 -2.4 20.2 14 14 A F H > S+ 0 0 52 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.889 108.9 51.0 -63.0 -40.5 18.2 -3.4 16.6 15 15 A L H >< S+ 0 0 99 -4,-2.9 3,-0.5 2,-0.2 4,-0.4 0.948 110.3 47.7 -62.5 -50.4 15.1 -1.2 16.6 16 16 A T H >< S+ 0 0 106 -4,-1.8 3,-0.9 1,-0.2 4,-0.4 0.871 108.6 56.5 -57.8 -38.6 16.9 1.8 17.9 17 17 A Q H >X S+ 0 0 17 -4,-2.0 3,-1.6 1,-0.2 4,-1.5 0.836 81.9 88.6 -62.0 -36.2 19.7 1.2 15.3 18 18 A V H S+ 0 0 133 -3,-0.9 3,-1.2 -4,-0.4 4,-0.9 0.929 106.8 44.4 -51.6 -51.8 17.6 5.1 12.2 20 20 A E H <> S+ 0 0 107 -3,-1.6 4,-1.9 -4,-0.4 -1,-0.3 0.789 103.2 67.8 -64.2 -28.0 21.3 4.6 11.4 21 21 A S H 3X S+ 0 0 46 -4,-1.5 4,-0.7 1,-0.2 -1,-0.3 0.780 95.1 56.9 -62.8 -27.4 20.3 1.8 8.9 22 22 A L H S+ 0 0 93 -4,-0.3 4,-2.2 1,-0.3 -1,-0.2 0.870 106.5 53.2 -48.5 -39.6 23.5 3.5 -7.4 32 32 A A H X S+ 0 0 56 -4,-1.0 4,-2.1 -3,-0.4 -1,-0.3 0.919 101.9 58.6 -62.5 -45.4 20.0 2.0 -7.4 33 33 A A H X S+ 0 0 60 -4,-1.8 4,-1.0 -3,-0.3 3,-0.5 0.934 111.9 39.1 -49.1 -55.2 18.5 5.4 -8.6 34 34 A Q H X S+ 0 0 125 -4,-1.8 4,-1.6 1,-0.2 3,-0.4 0.872 111.8 59.4 -64.5 -36.3 20.6 5.3 -11.7 35 35 A N H X S+ 0 0 67 -4,-2.2 4,-3.0 -5,-0.3 5,-0.2 0.813 94.2 65.4 -61.8 -29.7 20.0 1.6 -12.0 36 36 A L H < S+ 0 0 105 -4,-2.1 4,-0.4 -3,-0.5 -1,-0.2 0.946 105.0 43.6 -56.2 -47.5 16.3 2.4 -12.1 37 37 A Y H >X S+ 0 0 152 -4,-1.0 4,-1.0 -3,-0.4 3,-0.7 0.858 111.7 57.1 -63.4 -38.1 17.0 4.0 -15.4 38 38 A E H >X S+ 0 0 81 -4,-1.6 4,-1.3 1,-0.2 3,-0.6 0.965 106.5 44.8 -57.5 -59.1 19.2 1.1 -16.3 39 39 A K H 3< S+ 0 0 97 -4,-3.0 6,-0.3 1,-0.2 -1,-0.2 0.505 100.0 77.1 -66.9 -3.1 16.5 -1.6 -15.9 40 40 A T H <4 S+ 0 0 88 -3,-0.7 -1,-0.2 -4,-0.4 -2,-0.2 0.964 100.5 35.5 -71.1 -52.7 14.1 0.7 -17.9 41 41 A Y H << S+ 0 0 169 -4,-1.0 -2,-0.2 -3,-0.6 -1,-0.1 0.920 110.6 71.9 -65.9 -47.3 15.6 -0.1 -21.3 42 42 A L S < S- 0 0 96 -4,-1.3 3,-0.4 1,-0.1 0, 0.0 -0.459 76.6-139.8 -74.2 143.3 16.4 -3.7 -20.5 43 43 A P >> + 0 0 95 0, 0.0 3,-1.1 0, 0.0 4,-0.7 -0.009 66.3 120.5 -91.5 29.1 13.4 -6.2 -20.2 44 44 A A H 3> + 0 0 28 1,-0.2 4,-3.3 2,-0.2 5,-0.4 0.657 50.9 88.0 -65.7 -16.6 15.0 -8.0 -17.2 45 45 A V H 3> S+ 0 0 75 -3,-0.4 4,-0.7 -6,-0.3 -1,-0.2 0.869 93.3 40.7 -49.9 -42.9 11.9 -7.1 -15.2 46 46 A D H <> S+ 0 0 116 -3,-1.1 4,-1.5 2,-0.2 -1,-0.2 0.844 116.7 49.6 -76.1 -35.8 10.2 -10.3 -16.4 47 47 A E H X S+ 0 0 103 -4,-0.7 4,-2.8 1,-0.2 -2,-0.2 0.966 110.0 48.0 -67.5 -54.5 13.4 -12.5 -16.0 48 48 A K H X S+ 0 0 139 -4,-3.3 4,-2.7 2,-0.2 5,-0.2 0.750 106.4 63.7 -58.5 -24.1 14.2 -11.3 -12.5 49 49 A L H X S+ 0 0 100 -4,-0.7 4,-1.6 -5,-0.4 -1,-0.2 0.997 112.4 30.0 -63.3 -64.5 10.6 -12.0 -11.6 50 50 A R H X S+ 0 0 151 -4,-1.5 4,-2.5 1,-0.2 -2,-0.2 0.836 118.0 62.8 -63.1 -32.8 10.6 -15.8 -12.3 51 51 A D H X S+ 0 0 96 -4,-2.8 4,-1.6 1,-0.2 -2,-0.2 0.964 108.4 37.7 -56.1 -57.9 14.3 -15.7 -11.3 52 52 A L H X S+ 0 0 125 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.766 113.2 61.0 -66.0 -25.9 13.6 -14.6 -7.7 53 53 A Y H X S+ 0 0 141 -4,-1.6 4,-0.8 -5,-0.2 -1,-0.2 0.916 103.3 48.2 -67.5 -44.4 10.5 -16.8 -7.7 54 54 A S H >X S+ 0 0 64 -4,-2.5 3,-0.7 2,-0.2 4,-0.6 0.942 115.9 43.4 -61.0 -49.9 12.5 -20.0 -8.3 55 55 A K H >X S+ 0 0 162 -4,-1.6 4,-1.9 1,-0.2 3,-1.0 0.918 110.8 55.1 -61.8 -46.2 15.0 -19.2 -5.5 56 56 A S H 3X S+ 0 0 21 -4,-2.5 4,-1.4 1,-0.2 5,-0.4 0.659 89.9 79.2 -62.9 -16.9 12.3 -18.1 -3.1 57 57 A T H << S+ 0 0 101 -4,-0.8 -1,-0.2 -3,-0.7 4,-0.2 0.923 110.1 22.0 -58.1 -45.6 10.6 -21.5 -3.6 58 58 A A H << S+ 0 0 74 -3,-1.0 4,-0.3 -4,-0.6 -2,-0.2 0.875 129.5 46.5 -88.1 -44.8 13.0 -23.1 -1.2 59 59 A A H >X S+ 0 0 46 -4,-1.9 3,-1.9 1,-0.2 4,-1.3 0.968 114.8 44.5 -62.6 -57.3 14.2 -20.0 0.8 60 60 A M H 3X S+ 0 0 103 -4,-1.4 4,-1.7 1,-0.3 -1,-0.2 0.713 99.5 74.0 -61.8 -20.8 10.7 -18.5 1.4 61 61 A S H 3> S+ 0 0 84 -5,-0.4 4,-0.7 2,-0.2 -1,-0.3 0.690 102.7 41.0 -67.1 -16.7 9.5 -22.0 2.3 62 62 A T H <> S+ 0 0 82 -3,-1.9 4,-2.6 -4,-0.3 -2,-0.2 0.882 115.7 45.3 -93.9 -51.9 11.4 -21.6 5.6 63 63 A Y H X S+ 0 0 159 -4,-1.3 4,-2.9 2,-0.2 5,-0.3 0.691 108.1 63.9 -65.3 -18.7 10.6 -18.0 6.5 64 64 A T H X S+ 0 0 72 -4,-1.7 4,-2.5 -5,-0.2 5,-0.2 0.989 110.8 32.1 -69.5 -59.1 6.9 -18.8 5.5 65 65 A G H X S+ 0 0 39 -4,-0.7 4,-1.0 2,-0.2 -2,-0.2 0.886 124.4 49.5 -63.8 -37.8 6.3 -21.3 8.3 66 66 A I H >X S+ 0 0 94 -4,-2.6 4,-1.2 2,-0.2 3,-0.6 0.973 112.2 45.6 -63.7 -57.6 8.7 -19.4 10.5 67 67 A F H 3X S+ 0 0 145 -4,-2.9 4,-1.2 1,-0.3 3,-0.4 0.938 116.8 44.6 -50.4 -55.2 7.1 -16.0 9.9 68 68 A T H 3X S+ 0 0 56 -4,-2.5 4,-3.3 -5,-0.3 5,-0.3 0.701 101.1 74.4 -64.7 -19.8 3.6 -17.4 10.4 69 69 A D H X S+ 0 0 65 -4,-1.2 4,-0.8 -5,-0.3 3,-0.6 0.978 108.2 42.5 -67.8 -55.5 2.0 -14.7 13.8 72 72 A L H >X S+ 0 0 106 -4,-3.3 3,-1.0 1,-0.3 4,-0.9 0.863 109.5 61.1 -57.1 -37.2 -0.2 -17.6 14.7 73 73 A S H >X S+ 0 0 46 -4,-1.8 4,-1.2 -5,-0.3 3,-0.6 0.883 101.4 51.6 -57.8 -39.5 1.3 -17.4 18.2 74 74 A V H